These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 861 fasta sequence [ACCAGGCCANAATTTGGCACGAGGCACAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTATCAACAGGGAATC-ATAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGTCTGTATGTACAAAATATTGCCAAANTAT-AAATAGTTAATTAAACCGTATGTTNATCCCCAGATGAANTTNATGTNNATNTAN] [+] EMBL CD079642 [ACCAGGCCANAATTTGGCACGAGGCACAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTATCAACAGGGAATC ATAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGTCTGTATGTACAAAATATTGCCAAANTAT AAATAGTTAATTAAACCGTATGTTNATCCCCAGATGAANTTNATGTNNATNTAN] [-] EMBL CD073905 [ GTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCCCCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGCCAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACCCATTTTATCAACAAGGAATCAATAGAATTTTATATGTCCAGTCATATCTTCAATGATTTCATTAATGTCTGTATGTACAAAATATTGCCAAATAATAAAATAGTTAATTAACCCGTATGTTTAT CCCAGATtgagattta ] consensusID : consensus_8180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 798 fasta sequence [CCTGTTTATATCATCAGNTTCGTTACCAGNTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTATCAACAAGGAATCAATAGAATTTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGTCTGTATGTACAAAATTTTGCCAAATAAAAAATAGTTAA] [+] EMBL CD081171 [CCTGTTTATATCATCAGNTTCGTTACCAGNTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTG ] [-] EMBL CD074992 [ CTGTTTATATCATCAG TTCGTTACCAG TCTGCATGCTCGTTNTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTATCAACAAGGAATCAATAGAATTTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGTCTGTATGTACAAAATTTTGCCAAATAAAAAATAGTTAA] [+] EMBL CD083429 [ TTATTAATCGAAGTGTTGTAT CTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAAT ] consensusID : consensus_8180#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAATGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAATTTGTATGTTCGATCCAAAAAGAAGGACGTATATCTATGACCTAGAA] [+] EMBL SMAA69058 [GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAATGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAATTTGTATGTTCGATCCAAAAAGAAGGACGTATATCTATGACCTAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8180#0 --------------------------------------------------------ACCA 4 consensus_8180#1 ------------------------------------------------------------ consensus_8180#2 GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAA 60 consensus_8180#0 GGCCANAATTTGGCACGAGGCAC--AAACGGATAACGTTCGTTACCAGT-CTGCATGCTC 61 consensus_8180#1 ----------------CCTGTTT--ATATC-ATCAGNTTCGTTACCAGNTCTGCATGCTC 41 consensus_8180#2 TGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGT-CTGCATGCTC 119 * * * ** * *********** ********** consensus_8180#0 GTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAA 121 consensus_8180#1 GTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAA 101 consensus_8180#2 GTTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAA 179 *********************************** *********** ********** consensus_8180#0 TTTGTATGTTCGATCCAAAA-GAAGGACGTATATCTATTGACCTAGAAACTTTAATTATG 180 consensus_8180#1 TTTGTATGTTCGATCCAAAA-GAAGGACGTATATCTATTGACCTAGAAACTTTAATTATG 160 consensus_8180#2 TTTGTATGTTCGATCCAAAAAGAAGGACGTATATCTAT-GACCTAGAA------------ 226 ******************** ***************** ********* consensus_8180#0 CGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGAT 240 consensus_8180#1 CGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGAT 220 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 CGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATG 300 consensus_8180#1 CGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATG 280 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 CGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAAT 360 consensus_8180#1 CGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAAT 340 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 GAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTT 420 consensus_8180#1 GAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTT 400 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 GGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACA 480 consensus_8180#1 GGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACA 460 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 AAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATT 540 consensus_8180#1 AAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATT 520 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 CAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCT 600 consensus_8180#1 CAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCT 580 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 ATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCT 660 consensus_8180#1 ATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCT 640 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 GGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTAT 720 consensus_8180#1 GGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTAT 700 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 CAACAGGGAATCA-TAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGT 779 consensus_8180#1 CAACAAGGAATCAATAGAATTTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGT 760 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 CTGTATGTACAAAATATTGCCAAANTATAAATAGTTAATTAAACCGTATGTTNATCCCCA 839 consensus_8180#1 CTGTATGTACAAAATTTTGCCAAATAAAAAATAGTTAA---------------------- 798 consensus_8180#2 ------------------------------------------------------------ consensus_8180#0 GATGAANTTNATGTNNATNTAN 861 consensus_8180#1 ---------------------- consensus_8180#2 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||