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Schistosoma mansoni
cluster # 8180 cluster # 8180       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8180#0 length = 861 sequences # 2  
consensus_8180#1 length = 798 sequences # 3  
consensus_8180#2 length = 226 sequences # 1  

consensusID : consensus_8180#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 861
fasta sequence
                              [ACCAGGCCANAATTTGGCACGAGGCACAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTATCAACAGGGAATC-ATAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGTCTGTATGTACAAAATATTGCCAAANTAT-AAATAGTTAATTAAACCGTATGTTNATCCCCAGATGAANTTNATGTNNATNTAN]

[+] EMBL CD079642             [ACCAGGCCANAATTTGGCACGAGGCACAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTATCAACAGGGAATC ATAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGTCTGTATGTACAAAATATTGCCAAANTAT AAATAGTTAATTAAACCGTATGTTNATCCCCAGATGAANTTNATGTNNATNTAN]
[-] EMBL CD073905             [                                                                                                                                                                                                                                                                                                                                                                                                                     GTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCCCCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGCCAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACCCATTTTATCAACAAGGAATCAATAGAATTTTATATGTCCAGTCATATCTTCAATGATTTCATTAATGTCTGTATGTACAAAATATTGCCAAATAATAAAATAGTTAATTAACCCGTATGTTTAT CCCAGATtgagattta          ]


>consensus_8180#0 ACCAGGCCANAATTTGGCACGAGGCACAAACGGATAACGTTCGTTACCAGTCTGCATGCT CGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACA ATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATG CGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGAT CGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATG CGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAAT GAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTT GGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACA AAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATT CAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCT ATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCT GGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTAT CAACAGGGAATCATAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGTC TGTATGTACAAAATATTGCCAAANTATAAATAGTTAATTAAACCGTATGTTNATCCCCAG ATGAANTTNATGTNNATNTAN



consensusID : consensus_8180#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 798
fasta sequence
                              [CCTGTTTATATCATCAGNTTCGTTACCAGNTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTATCAACAAGGAATCAATAGAATTTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGTCTGTATGTACAAAATTTTGCCAAATAAAAAATAGTTAA]

[+] EMBL CD081171             [CCTGTTTATATCATCAGNTTCGTTACCAGNTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD074992             [ CTGTTTATATCATCAG TTCGTTACCAG TCTGCATGCTCGTTNTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTATCAACAAGGAATCAATAGAATTTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGTCTGTATGTACAAAATTTTGCCAAATAAAAAATAGTTAA]
[+] EMBL CD083429             [                                                                                                                                                                    TTATTAATCGAAGTGTTGTAT CTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAAT                                                                                                             ]


>consensus_8180#1 CCTGTTTATATCATCAGNTTCGTTACCAGNTCTGCATGCTCGTTTTAGTGGTTACGATTT CGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAA AGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGT TGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATG GATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGA CTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGC TGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGT GAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGC TTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGAC TGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCC TTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACT ACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTATCAACAAGGAATCAATAGAAT TTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGTCTGTATGTACAAAATTTTGC CAAATAAAAAATAGTTAA



consensusID : consensus_8180#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence
                              [GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAATGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAATTTGTATGTTCGATCCAAAAAGAAGGACGTATATCTATGACCTAGAA]

[+] EMBL SMAA69058            [GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAATGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAATTTGTATGTTCGATCCAAAAAGAAGGACGTATATCTATGACCTAGAA]


>consensus_8180#2 GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAA TGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGTCTGCATGCTCG TTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAAT TTGTATGTTCGATCCAAAAAGAAGGACGTATATCTATGACCTAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8180#0      --------------------------------------------------------ACCA 4
consensus_8180#1      ------------------------------------------------------------
consensus_8180#2      GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAA 60
                                                                                  

consensus_8180#0      GGCCANAATTTGGCACGAGGCAC--AAACGGATAACGTTCGTTACCAGT-CTGCATGCTC 61
consensus_8180#1      ----------------CCTGTTT--ATATC-ATCAGNTTCGTTACCAGNTCTGCATGCTC 41
consensus_8180#2      TGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGT-CTGCATGCTC 119
                                         *     * *   ** *  ***********  **********

consensus_8180#0      GTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAA 121
consensus_8180#1      GTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAA 101
consensus_8180#2      GTTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAA 179
                      ***********************************   *********** **********

consensus_8180#0      TTTGTATGTTCGATCCAAAA-GAAGGACGTATATCTATTGACCTAGAAACTTTAATTATG 180
consensus_8180#1      TTTGTATGTTCGATCCAAAA-GAAGGACGTATATCTATTGACCTAGAAACTTTAATTATG 160
consensus_8180#2      TTTGTATGTTCGATCCAAAAAGAAGGACGTATATCTAT-GACCTAGAA------------ 226
                      ******************** ***************** *********            

consensus_8180#0      CGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGAT 240
consensus_8180#1      CGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGAT 220
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      CGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATG 300
consensus_8180#1      CGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATG 280
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      CGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAAT 360
consensus_8180#1      CGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAAT 340
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      GAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTT 420
consensus_8180#1      GAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTT 400
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      GGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACA 480
consensus_8180#1      GGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACA 460
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      AAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATT 540
consensus_8180#1      AAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATT 520
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      CAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCT 600
consensus_8180#1      CAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCT 580
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      ATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCT 660
consensus_8180#1      ATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCT 640
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      GGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTAT 720
consensus_8180#1      GGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTAT 700
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      CAACAGGGAATCA-TAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGT 779
consensus_8180#1      CAACAAGGAATCAATAGAATTTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGT 760
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      CTGTATGTACAAAATATTGCCAAANTATAAATAGTTAATTAAACCGTATGTTNATCCCCA 839
consensus_8180#1      CTGTATGTACAAAATTTTGCCAAATAAAAAATAGTTAA---------------------- 798
consensus_8180#2      ------------------------------------------------------------
                                                                                  

consensus_8180#0      GATGAANTTNATGTNNATNTAN 861
consensus_8180#1      ----------------------
consensus_8180#2      ----------------------
                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)