|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 861 fasta sequence
[ACCAGGCCANAATTTGGCACGAGGCACAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTATCAACAGGGAATC-ATAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGTCTGTATGTACAAAATATTGCCAAANTAT-AAATAGTTAATTAAACCGTATGTTNATCCCCAGATGAANTTNATGTNNATNTAN]
[+] EMBL CD079642 [ACCAGGCCANAATTTGGCACGAGGCACAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTATCAACAGGGAATC ATAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGTCTGTATGTACAAAATATTGCCAAANTAT AAATAGTTAATTAAACCGTATGTTNATCCCCAGATGAANTTNATGTNNATNTAN]
[-] EMBL CD073905 [ GTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCCCCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGCCAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACCCATTTTATCAACAAGGAATCAATAGAATTTTATATGTCCAGTCATATCTTCAATGATTTCATTAATGTCTGTATGTACAAAATATTGCCAAATAATAAAATAGTTAATTAACCCGTATGTTTAT CCCAGATtgagattta ]
consensusID : consensus_8180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 798 fasta sequence
[CCTGTTTATATCATCAGNTTCGTTACCAGNTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTATCAACAAGGAATCAATAGAATTTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGTCTGTATGTACAAAATTTTGCCAAATAAAAAATAGTTAA]
[+] EMBL CD081171 [CCTGTTTATATCATCAGNTTCGTTACCAGNTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTG ]
[-] EMBL CD074992 [ CTGTTTATATCATCAG TTCGTTACCAG TCTGCATGCTCGTTNTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAATTTGTATGTTCGATCCAAAAGAAGGACGTATATCTATTGACCTAGAAACTTTAATTATGCGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTATCAACAAGGAATCAATAGAATTTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGTCTGTATGTACAAAATTTTGCCAAATAAAAAATAGTTAA]
[+] EMBL CD083429 [ TTATTAATCGAAGTGTTGTAT CTCTGTGCCTGGTATCGAAAAGACTATTATTGATCGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATGCGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAATGAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTTGGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACAAAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATTCAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCTATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCTGGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAAT ]
consensusID : consensus_8180#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence
[GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAATGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAATTTGTATGTTCGATCCAAAAAGAAGGACGTATATCTATGACCTAGAA]
[+] EMBL SMAA69058 [GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAATGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGTCTGCATGCTCGTTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAATTTGTATGTTCGATCCAAAAAGAAGGACGTATATCTATGACCTAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8180#0 --------------------------------------------------------ACCA 4
consensus_8180#1 ------------------------------------------------------------
consensus_8180#2 GATGTAGATGATAACGGGAATTAATCAAGAAAATATGGAACGAAACATAGAACAAGAAAA 60
consensus_8180#0 GGCCANAATTTGGCACGAGGCAC--AAACGGATAACGTTCGTTACCAGT-CTGCATGCTC 61
consensus_8180#1 ----------------CCTGTTT--ATATC-ATCAGNTTCGTTACCAGNTCTGCATGCTC 41
consensus_8180#2 TGCTATAAGTCATGATGAAGCTCGCAAACGGATAACGTTCGTTACCAGT-CTGCATGCTC 119
* * * ** * *********** **********
consensus_8180#0 GTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAA 121
consensus_8180#1 GTTTTAGTGGTTACGATTTCGACAGAAAAAATTCATCGCCGAAGTGGGCACGTCTTACAA 101
consensus_8180#2 GTTTTAGTGGTTACGATTTCGACAGAAAAAATTCANNNCCGAAGTGGGCTCGTCTTACAA 179
*********************************** *********** **********
consensus_8180#0 TTTGTATGTTCGATCCAAAA-GAAGGACGTATATCTATTGACCTAGAAACTTTAATTATG 180
consensus_8180#1 TTTGTATGTTCGATCCAAAA-GAAGGACGTATATCTATTGACCTAGAAACTTTAATTATG 160
consensus_8180#2 TTTGTATGTTCGATCCAAAAAGAAGGACGTATATCTAT-GACCTAGAA------------ 226
******************** ***************** *********
consensus_8180#0 CGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGAT 240
consensus_8180#1 CGCCTTATTAATCGAAGTGTTGTATCCTCTGTGCCTGGTATCGAAAAGACTATTATTGAT 220
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 CGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATG 300
consensus_8180#1 CGTTCAAAACCGAATCAATGGATGTTCCGAGTTGAAGGTATAAACATGATTGAGATGATG 280
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 CGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAAT 360
consensus_8180#1 CGTTATCCACAAGTGTTTGACTTGAGTCAACTCTATACTAACAATATAACAGTAATGAAT 340
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 GAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTT 420
consensus_8180#1 GAAACATACGGCATTGAAGCTGCTCGGGCAGCACTTCAAAGAGAAGTATCTGGAGTCTTT 400
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 GGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACA 480
consensus_8180#1 GGTCATTATGGGATTCATGTGAATTCACGGCATTTATCACTAATTAGTGATTATCTTACA 460
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 AAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATT 540
consensus_8180#1 AAGTTTGGCGTATATCATGCTTTTAATAGACGTTCAATGAGTTCACATCCATCACCGATT 520
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 CAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCT 600
consensus_8180#1 CAGCAAATGACCTTCGAGACTGTTGCAAATGTTTTAAAACATTCATTACAAAATGATTCT 580
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 ATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCT 660
consensus_8180#1 ATGGACAATTTAGTCTCTCCTTCTGCAAGTTTAGTTGCTGGTCGAATAGTTCATTATGCT 640
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 GGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTNTAT 720
consensus_8180#1 GGAACAAATTGTTTCGAACTACTTCAAAAGTTGGCTTGTTAAATAAAATACACATTTTAT 700
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 CAACAGGGAATCA-TAGAATTNTATATGTACAGTCATATCTTCAATGATTTCATTAATGT 779
consensus_8180#1 CAACAAGGAATCAATAGAATTTTATATGTACAGTCATATCTTCAGAAATTTCATTAATGT 760
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 CTGTATGTACAAAATATTGCCAAANTATAAATAGTTAATTAAACCGTATGTTNATCCCCA 839
consensus_8180#1 CTGTATGTACAAAATTTTGCCAAATAAAAAATAGTTAA---------------------- 798
consensus_8180#2 ------------------------------------------------------------
consensus_8180#0 GATGAANTTNATGTNNATNTAN 861
consensus_8180#1 ----------------------
consensus_8180#2 ----------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||