These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 815 fasta sequence [AAAACCGTGAAGCCACTTTACCTCTGAAGTTCGACATTTGACAGAAAAACTGGGCCGAATGGAAGTTGATTTGGAATTAGCTCGAAAACAATTGAATGAACAACAAAATGAAAGTTTANAATTCAATACAGTACATGAATCCATGGAGTCTGTTTAAAACCACTTGCAACGTCAACTACGTCAACGTGAATCAGAATGCAGCCGTTTGTCTGTTCAAGTACGTAATTTGGAAACTCGTCTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATCTATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCATCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAGTCGACTACATACGTTGAATGAACGATTAAAAAAAACAGAATCTGACAGAGAGCGTAGTCAGATTCAGTTGGATGATGTAGAACANAGATTGCTTG] [-] EMBL CD146491 [AAAACCGTGAAGCCACTTTACCTCTGAAGTTCGACATTTGACAGAAAAACTGGGCCGAATGGAAGTTGATTTGGAATTAGCTCGAAAACAATTGAATGAACAACAAAATGAAAGTTTANAATTCAATACAGTACATGAATCCATGGAGTCTGTTTAAAACCACTTGCAACGTCAACTACGTCAACGTGAATCAGAATGCAGCCGTTTGTCTGTTCAAGTACGTAATTTGGAAACTCGTCTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAAT ] [+] EMBL CD118631 [ CTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATCTATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCATCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAGTCGACTACATACGTTGAATGAACGATTAAAAAAAACAGAATCTGACAGAGAGCGTAGTCAGATTCAGTTGGATGATGTAGAACANAGATTGCTTG] [+] EMBL CD118670 [ CTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGCCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATCTATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGTTGAAGAAGAACTACAGCATCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTANATGATTACCACGGAGATGCTGCAACGCAGGCTAGTCGACTACATACGTTGAATGAACGATTAAAAAAAACAGAATCTGACAGAGAGCGTAGTCAGATTCAGTTGGATGATGTAGAACA ] [+] EMBL CD186619 [ CTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATCTATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGA ] [-] EMBL CD148811 [ ACAAAAACGTGGTGCAGATGAAGTTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCCCCct ] consensusID : consensus_8184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [ACACATTCAGACTTTCACGTGACAACCTAAACAGACGTCTCAATCCCGTTTTCAGGAGAGCCAGACACCATATACGCTTTAACGCTACAATCTAAATAGTACAGCTCAATCCTGTGGCGCAACCACACAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCGTCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAGTCGA] [+] EMBL CD166708 [ACACATTCAGACTTTCACGTGACAACCTAAACAGACGTCTCAATCCCGTTTTCAGGAGAGCCAGACACCATATACGCTTTAACGCTACAATCTAAATAGTACAGCTCAATCCTGTGGCGCAACCACACAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCGTCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAGTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8184#0 AAAACCGTGAAGCCACTTTACCTCTGAAGTTCGACATTTGACAGAAAAACTGGGCCGAAT 60 consensus_8184#1 ------------------------------------------------------------ consensus_8184#0 GGAAGTTGATTTGGAATTAGCTCGAAAACAATTGAATGAACAACAAAATGAAAGTTTANA 120 consensus_8184#1 ------------------------------------------------------------ consensus_8184#0 ATTCAATACAGTACATGAATCCATGGAGTCTGTTTAAAACCACTTGCAACGTCAACTACG 180 consensus_8184#1 ------------------------------------------------------------ consensus_8184#0 TCAACGTGAATCAGAATGCAGCCGTTTGTCTGTTCAAGTACGTAATTTGGAAACTCGTCT 240 consensus_8184#1 ------------------------------------------------------------ consensus_8184#0 AGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACG 300 consensus_8184#1 ------------------------------------------------------------ consensus_8184#0 TATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGA 360 consensus_8184#1 ------------------------------------------------------------ consensus_8184#0 TGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTAT 420 consensus_8184#1 ------------------------------------------------------------ consensus_8184#0 AGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGA 480 consensus_8184#1 ---ACACATTCAGACTTTCACGTGACAACCTAAACAGACGTCTCAATCCCGTTTTCAGGA 57 ******* * * * * * * *** * *** **** consensus_8184#0 GCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATC 540 consensus_8184#1 GAGCCAG--ACACCATATACGCTTTA------ACGCTACAAT-------CTAAATAGTAC 102 * ***** * * ** ** ** *** * * * *** ***** * consensus_8184#0 TATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGC 600 consensus_8184#1 AGCTCAATCCTGTGGCGCAA------CCACACAGGAAAATCTCCGATTACGTGAAGTAGC 156 * ***** * * * **************************** consensus_8184#0 GTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCATCTGCGTACTAG 660 consensus_8184#1 GTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCGTCTGCGTACTAG 216 *********************************************** ************ consensus_8184#0 TTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAG 720 consensus_8184#1 TTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAG 276 ************************************************************ consensus_8184#0 TCGACTACATACGTTGAATGAACGATTAAAAAAAACAGAATCTGACAGAGAGCGTAGTCA 780 consensus_8184#1 TCGA-------------------------------------------------------- 280 **** consensus_8184#0 GATTCAGTTGGATGATGTAGAACANAGATTGCTTG 815 consensus_8184#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||