cluster # 8184

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Schistosoma mansoni
cluster # 8184 cluster # 8184 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8184#0 length = 815 sequences # 5

consensus_8184#1 length = 280 sequences # 1

consensusID : consensus_8184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 815
fasta sequence

                              [AAAACCGTGAAGCCACTTTACCTCTGAAGTTCGACATTTGACAGAAAAACTGGGCCGAATGGAAGTTGATTTGGAATTAGCTCGAAAACAATTGAATGAACAACAAAATGAAAGTTTANAATTCAATACAGTACATGAATCCATGGAGTCTGTTTAAAACCACTTGCAACGTCAACTACGTCAACGTGAATCAGAATGCAGCCGTTTGTCTGTTCAAGTACGTAATTTGGAAACTCGTCTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATCTATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCATCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAGTCGACTACATACGTTGAATGAACGATTAAAAAAAACAGAATCTGACAGAGAGCGTAGTCAGATTCAGTTGGATGATGTAGAACANAGATTGCTTG]

[-] EMBL CD146491             [AAAACCGTGAAGCCACTTTACCTCTGAAGTTCGACATTTGACAGAAAAACTGGGCCGAATGGAAGTTGATTTGGAATTAGCTCGAAAACAATTGAATGAACAACAAAATGAAAGTTTANAATTCAATACAGTACATGAATCCATGGAGTCTGTTTAAAACCACTTGCAACGTCAACTACGTCAACGTGAATCAGAATGCAGCCGTTTGTCTGTTCAAGTACGTAATTTGGAAACTCGTCTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAAT                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD118631             [                                                                                                                                                                                                                                              CTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATCTATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCATCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAGTCGACTACATACGTTGAATGAACGATTAAAAAAAACAGAATCTGACAGAGAGCGTAGTCAGATTCAGTTGGATGATGTAGAACANAGATTGCTTG]
[+] EMBL CD118670             [                                                                                                                                                                                                                                              CTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGCCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATCTATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGTTGAAGAAGAACTACAGCATCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTANATGATTACCACGGAGATGCTGCAACGCAGGCTAGTCGACTACATACGTTGAATGAACGATTAAAAAAAACAGAATCTGACAGAGAGCGTAGTCAGATTCAGTTGGATGATGTAGAACA           ]
[+] EMBL CD186619             [                                                                                                                                                                                                                                              CTAGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACGTATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGATGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATCTATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGA                                                                                                                                                                                   ]
[-] EMBL CD148811             [                                                                                                                                                                                                                                                                                                                                                      ACAAAAACGTGGTGCAGATGAAGTTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTATAGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGAGCCCCct                                                                                                                                                                                                                                                                                                                                        ]




>consensus_8184#0
AAAACCGTGAAGCCACTTTACCTCTGAAGTTCGACATTTGACAGAAAAACTGGGCCGAAT
GGAAGTTGATTTGGAATTAGCTCGAAAACAATTGAATGAACAACAAAATGAAAGTTTANA
ATTCAATACAGTACATGAATCCATGGAGTCTGTTTAAAACCACTTGCAACGTCAACTACG
TCAACGTGAATCAGAATGCAGCCGTTTGTCTGTTCAAGTACGTAATTTGGAAACTCGTCT
AGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACG
TATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGA
TGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTAT
AGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGA
GCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATC
TATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGC
GTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCATCTGCGTACTAG
TTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAG
TCGACTACATACGTTGAATGAACGATTAAAAAAAACAGAATCTGACAGAGAGCGTAGTCA
GATTCAGTTGGATGATGTAGAACANAGATTGCTTG

consensusID : consensus_8184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [ACACATTCAGACTTTCACGTGACAACCTAAACAGACGTCTCAATCCCGTTTTCAGGAGAGCCAGACACCATATACGCTTTAACGCTACAATCTAAATAGTACAGCTCAATCCTGTGGCGCAACCACACAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCGTCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAGTCGA]

[+] EMBL CD166708             [ACACATTCAGACTTTCACGTGACAACCTAAACAGACGTCTCAATCCCGTTTTCAGGAGAGCCAGACACCATATACGCTTTAACGCTACAATCTAAATAGTACAGCTCAATCCTGTGGCGCAACCACACAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCGTCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAGTCGA]




>consensus_8184#1
ACACATTCAGACTTTCACGTGACAACCTAAACAGACGTCTCAATCCCGTTTTCAGGAGAG
CCAGACACCATATACGCTTTAACGCTACAATCTAAATAGTACAGCTCAATCCTGTGGCGC
AACCACACAGGAAAATCTCCGATTACGTGAAGTAGCGTCGAAATGCGAACAACGTCTACA
TGCAGCTGAAGAAGAACTACAGCGTCTGCGTACTAGTTTGTCCACTTGTGAAGCTTTACT
AAATGATTATCACGGAGATGCTGCAATGCAGGCTAGTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8184#0      AAAACCGTGAAGCCACTTTACCTCTGAAGTTCGACATTTGACAGAAAAACTGGGCCGAAT 60
consensus_8184#1      ------------------------------------------------------------
                                                                                  

consensus_8184#0      GGAAGTTGATTTGGAATTAGCTCGAAAACAATTGAATGAACAACAAAATGAAAGTTTANA 120
consensus_8184#1      ------------------------------------------------------------
                                                                                  

consensus_8184#0      ATTCAATACAGTACATGAATCCATGGAGTCTGTTTAAAACCACTTGCAACGTCAACTACG 180
consensus_8184#1      ------------------------------------------------------------
                                                                                  

consensus_8184#0      TCAACGTGAATCAGAATGCAGCCGTTTGTCTGTTCAAGTACGTAATTTGGAAACTCGTCT 240
consensus_8184#1      ------------------------------------------------------------
                                                                                  

consensus_8184#0      AGCAGAACAACAAGCACAGAATCAAGCTCGTCTAGAAACAGCTGAAGTCAGTTTAGAACG 300
consensus_8184#1      ------------------------------------------------------------
                                                                                  

consensus_8184#0      TATGCGAGAAACAAAAGAAGCATTGAAACGAGCTGCTAAGTCACAAAAACGTCGTGCAGA 360
consensus_8184#1      ------------------------------------------------------------
                                                                                  

consensus_8184#0      TGAAGCTGAAGAAGCATATCGTGAAATTTCCCACAAACTTGCTACTCAAGAGTCCATTAT 420
consensus_8184#1      ------------------------------------------------------------
                                                                                  

consensus_8184#0      AGCTGGTTTTCAGACGGAATTGGAAAACTGTGCTCTTAGATCTAGAGGTCGTAGCAAGGA 480
consensus_8184#1      ---ACACATTCAGACTTTCACGTGACAACCTAAACAGACGTCTCAATCCCGTTTTCAGGA 57
                              *******      *  * *   *   *  *  ***  *   ***    ****

consensus_8184#0      GCGCCAGTTAAATGATGTAGGCATTATGCATGATGGTGGAATGGTGGATTCAAATAAATC 540
consensus_8184#1      GAGCCAG--ACACCATATACGCTTTA------ACGCTACAAT-------CTAAATAGTAC 102
                      * *****  * *  ** ** ** ***      * * *  ***         *****   *

consensus_8184#0      TATGTATGTGAATGGCGATAAGAGTCTAAGAGAGGAAAATCTCCGATTACGTGAAGTAGC 600
consensus_8184#1      AGCTCAATCCTGTGGCGCAA------CCACACAGGAAAATCTCCGATTACGTGAAGTAGC 156
                           *      *****  *        * * ****************************

consensus_8184#0      GTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCATCTGCGTACTAG 660
consensus_8184#1      GTCGAAATGCGAACAACGTCTACATGCAGCTGAAGAAGAACTACAGCGTCTGCGTACTAG 216
                      *********************************************** ************

consensus_8184#0      TTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAG 720
consensus_8184#1      TTTGTCCACTTGTGAAGCTTTACTAAATGATTATCACGGAGATGCTGCAATGCAGGCTAG 276
                      ************************************************************

consensus_8184#0      TCGACTACATACGTTGAATGAACGATTAAAAAAAACAGAATCTGACAGAGAGCGTAGTCA 780
consensus_8184#1      TCGA-------------------------------------------------------- 280
                      ****                                                        

consensus_8184#0      GATTCAGTTGGATGATGTAGAACANAGATTGCTTG 815
consensus_8184#1      -----------------------------------