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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1177 fasta sequence
[TAAAACATTTTATTATTTCAAAATATACATACAAGAAATGTGCAGCCATTAAATTACACAAGTTGAGTCAACTAATTTGTCCCTCTACCATTGAATAACGATCAATATCAGACAATGGCTGCTTTACTCGTCCAGGTGTTATTGGTTTCAGTTGATCCAAAACGAATTGGTTGGCTGTACTATTTCTACTGCTTCGTTCCCATAGAATTGGTATTGTAGGATCCCTTGAAGGATGTAAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTTTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAACTGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATTTCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGTGGCAGAAACAACAAACGGTAAAGTAAGGCAAAGAGTGCTGGGACTTCTTATTGTTTGAAAGAGCATAGCATTAATTAAACAACTAAGAGGAATGGGAGTAAGACCCATACGACGTGAAAGAAGGTCAGAGTAGTCTGATGTATTCTTTCCCTGATGGCATAATAATAGGTCGTAAGCAATGCTCACAGTATACTCCTCATAGACATTTGAAGGGATCACATTAAATTTGGTAATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATCAATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATACAATAATTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTGAAATAAATTCGTTTTTCCCCATTTTACGCCTCGTGCCGAAATNTTGGCCT]
[+] EMBL CD075371 [TAAAACATTTTATTATTTCAAAATATACATACAAGAAATGTGCAGCCATTAAATTACACAAGTTGAGTCAACTAATTTGTCCCTCTACCATTGAATAACGATCAATATCAGACAATGGCTGCTTTACTCGTCCAGGTGTTATTGGTTTCAGTTGATCCAAAACGAATTGGTTGGCTGTACTATTTCTACTGCTTCGTTCCCATAGAATTGGTATTGTAGGATCCCTTGAAGGATGTAAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTTTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGT ]
[+] EMBL CD074684 [ AAACATTTTATTATTTCAAAATATACATACAAGAAATGTGCAGCCATTAAATTACACAAGTTGAGTCAACTAATTTGTCCCTCTACCATTGAATAACGATCAATATCAGACAATGGCTGCTTTACTCGTCCAGGTGTTATTGGTTTCAGTTGATCCAAAACGAATTGGTTGGCTGTACTATTTCTACTGCTTCGTTCCCATAAAATTGGTATTGTAGGATCCCTTGAAGGATGTAAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTTTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGGGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAAAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTANCA ]
[+] EMBL CD194052 [ TTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGNTCCATACATGTAGTC ]
[-] EMBL CD080760 [ cTTATTGCCATATAATTCTCNTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAACTGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATTTCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGTGGCAGAAACAACAAACGGTAAAGTAAGGCAAAGAGTGCTGGGACTTCTTATTGTTTGAAAGAGCATAGCATTAATTAAACAACTAAGAGGAATGGGAGTAAGACCCATACGACGTGAAAGAAGGTCAGAGTAGTCTGATGTATTCTTTCCCTGATGGCATAATAATAGGTCGTAAGCAATGCTCACAGTATACTCCTCATAGACATTTGAAGGGATCACATTAAATTTGGTAATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATCAATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATACAATAATTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTGAAATAAATTCGTTTTTCCCCATTTTACGCCTCGTGCCGAAATNTTGGCCT]
consensusID : consensus_8190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1041 fasta sequence
[ATTATTTTCAAATTCATCAGAATGGCAGCATTANTCCAGTGAGTCACTATTGTCCTCACCATGAATACGATCATATCAGCAATGCTGCTTACTGTNCAGGTGTATGGTTCAGTTGATCAAAACGAATGGTGGCTGACTATTTTACTGTTCGTTCCCATAGAATGGTATGTAGGATCCCTGAAGGATGTAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTNTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAACTGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATTTCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGTGTTAATGGAGTTGATTCACTAGGTTCATATAGACTCTTTGGTGTTCCGGTTGCAGAGGCCATAATTGATTGATATGGTTCAATCAATTCATTCCAAATGCTACCCGTAGAAATCGGACTTAACACTCTAAGCTTATTTCCAGCGAATTCTGATGTATCTTCAGAAGTTAGTGAATGATTTATGTCCATATTGGCCGTTATATCTACGGGACCTGAGTCGCTTTTGAATTTCCGATACCTAAGACCCGTCGGCAAAAAGCAATCTTCATCTCTAGTCGGTTGGTCATAACCTGTGAAACCAAAAGGAGGTTTTCTTGACGATATTCGAATTTCCTTTTCTGAAAGAATAGGCCTCGTGCCGAATTNTTGGCTCCG]
[-] EMBL CD081546 [ATTATTTTCAAATTCATCAGAATGGCAGCATTANTCCAGTGAGTCACTATTGTCCTCACCATGAATACGATCATATCAGCAATGCTGCTTACTGTNCAGGTGTATGGTTCAGTTGATCAAAACGAATGGTGGCTGACTATTTTACTGTTCGTTCCCATAGAATGGTATGTAGGATCCCTGAAGGATGTAAGGGGCAGTACCTGAACTTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAAGTATAACTAGGGTNTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCTGTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATACTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAATGATTCGTCTTTATTGCCATATAATTCTCCTAAGATACTAGTCATCTCATACCTGTTCCATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAACTGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATTTCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGTGTTAATGGAGTTGATTCACTAGGTTCATATAGACTCTTTGGTGTTCCGGTTGCAGAGGCCATAATTGATTGATATGGTTCAATCAATTCATTCCAAATGCTACCCGTAGAAATCGGACTTAACACTCTAAGCTTATTTCCAGCGAATTCTGATGTATCTTCAGAAGTTAGTGAATGATTTATGTCCATATTGGCCGTTATATCTACGGGACCTGAGTCGCTTTTGAATTTCCGATACCTAAGACCCGTCGGCAAAAAGCAATCTTCATCTCTAGTCGGTTGGTCATAACCTGTGAAACCAAAAGGAGGTTTTCTTGACGATATTCGAATTTCCTTTTCTGAAAGAATAGGCCTCGTGCCGAATTNTTGGCTCCG]
consensusID : consensus_8190#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[GGTAATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATCAATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATACAATATTTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTGAAATAAATTCGTTTTTCCCATTTTACGAAATACATTACCTTTTAATTCAACAAAATTGTTCGAAATAAACACAGTGATCAATGATTTATTTTGTGAATTGAATGCTACATTTACAAGTAGTAACTTGACATAGCAGAAGGAAGCAGTGGGCTATGAGACAAAAGAAAGCAAAGCAGTACTGTAAAACAACATCACGCCAGAGAATGAAACTATTTTCTTCTAGA]
[+] EMBL CD197275 [GGTAATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATCAATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATACAATATTTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTGAAATAAATTCGTTTTTCCCATTTTACGAAATACATTACCTTTTAATTCAACAAAATTGTTCGAAATAAACACAGTGATCAATGATTTATTTTGTGAATTGAATGCTACATTTACAAGTAGTAACTTGACATAGCAGAAGGAAGCAGTGGGCTATGAGACAAAAGAAAGCAAAGCAGTACTGTAAAACAACATCACGCCAGAGAATGAAACTATTTTCTTCTAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8190#0 TAAAACATTTTATTATTTCAAAATATACATACAAGAAATGTGCAGCCATTAAATTACACA 60
consensus_8190#1 -----------ATTATTTTCAAATTCATC-----AGAATG-GCAGC------ATTANTCC 37
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 AGTTGAGTCAACTAATTTGTCCCTCTACCATTGAATAACGATCAATATCAGACAATGGCT 120
consensus_8190#1 AGT-GAGTCA-CTA--TTGTCCTC--ACCAT-GAATA-CGATCA-TATCAG-CAATG-CT 86
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 GCTTTACTCGTCCAGGTGTTATTGGTTTCAGTTGATCCAAAACGAATTGGTTGGCTGTAC 180
consensus_8190#1 GCTT-ACT-GTNCAGGTGTA--TGGTT-CAGTTGATC-AAAACGAATGG--TGGCTG-AC 137
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 TATTTCTACTGCTTCGTTCCCATAGAATTGGTATTGTAGGATCCCTTGAAGGATGTAAAG 240
consensus_8190#1 TATTT-TACTG-TTCGTTCCCATAGAAT-GGTAT-GTAGGATCCCT-GAAGGATGTAA-G 191
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 GGGCAGTACCTGAAC-TTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAA 299
consensus_8190#1 GGGCAGTACCTGAAC-TTTCAGTCATTGTACGTATTCGGCGTTTGTGTATACGATTGAAA 250
consensus_8190#2 -GGTAATGAATGAATGCTTTATCCAATCCACAG---CAACTTCTGCCAGAAGAATATAGG 56
** * * **** ** * ** * ** * * * ** * ** *
consensus_8190#0 GTATAACTAGGGTTTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCT 359
consensus_8190#1 GTATAACTAGGGTNTGATTCATTTTCCTGAGCACTTCCGTCTTTAATTGGTGTTTCATCT 310
consensus_8190#2 TTACATC---AATGAGAATGGTTTG---AAGATCATCTAAATTCCATCCAC-TTTCATTC 109
** * * * ** * *** ** * ** ** ** ******
consensus_8190#0 GTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATA 419
consensus_8190#1 GTAATACGTATATTGCATTCCATAGACTTCAAAAAAGTACTCAGAATACCTAGATCGATA 370
consensus_8190#2 ATATTACG------GCATACAATA----TTTGAAAACCAAACACAATAGTGAAATCGTTC 159
** **** **** * *** * **** * ** **** * **** *
consensus_8190#0 CTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAAT 479
consensus_8190#1 CTATAATATCTTGGTCTCAATAAAACACAAGCACTATGAGGCCGTACCATTGCTGTAAAT 430
consensus_8190#2 ACGTACATCAGCACATGCAATTTGAAATAAATTC-----GTTTTTCCCATTTTACGAAAT 214
** **** * * ** * * * ***** ****
consensus_8190#0 G-ATTCGTCTTTATTGCCATATAATTCTCCTAAG-ATAC-TAGTCATCTCATACCTGTTC 536
consensus_8190#1 G-ATTCGTCTTTATTGCCATATAATTCTCCTAAG-ATAC-TAGTCATCTCATACCTGTTC 487
consensus_8190#2 ACATTACCTTTTAATTCAACAAAATTGTTCGAAATAAACACAGTGATCAATGATTTATTT 274
*** **** * * * * **** * * ** * ** *** *** * * **
consensus_8190#0 CATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAAC 596
consensus_8190#1 CATACATGTAGTCCCTCATGATGTGATGTAGCAATGGGAGTATTTGTGTAAGTAGTAAAC 547
consensus_8190#2 TGTGAATTGAATGCTACAT--TTACAAGTAGTAACTTGA-----CATAGCAGAAGGAAGC 327
* ** * * * *** * * **** ** ** * ** ** ** *
consensus_8190#0 TGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATT 656
consensus_8190#1 TGAGGTTTGTCTTCAGTCTGGAACACACATGAACCACGGAAACTACGTTCGCACTCGATT 607
consensus_8190#2 AGTGGGCTATGAG-ACAAAAGAAAGCAAAGCAGTACTGTAAAACAACATCACGCCAGAGA 386
* ** * * * *** ** * * * *** * ** * * **
consensus_8190#0 TCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGT 716
consensus_8190#1 TCTAACTTATTATTCCCAGAATTGAATATCCGATTTGCTGACCCTATTCGACTAAGAGGT 667
consensus_8190#2 ATGAAACTATTTTCTTCTAGA--------------------------------------- 407
** **** * * *
consensus_8190#0 GGCAGAAACAACAAACGGTAAAGTAAGGCAAAGAGTGCTGGGACTTCTTATTGTTTGAAA 776
consensus_8190#1 GTTAATGGAGTTGATTCACTAGGTTCA-TATAGACTCTTTGGTGTTCCGGTTGC---AGA 723
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 GAGCATAGCATTAATTAAACAACTAAGAGGAATGGGAGTAAGACCCATACGACGTGAAAG 836
consensus_8190#1 GGCCATA--ATTGATTGATATGGTTCAATCAATTCATTCCAAATGC-TACC-CGTAGAAA 779
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 AAGGTCAGAGTAGTCTGATGTATTCTTT------CCCTGATGGCATAATAATAGGTCGTA 890
consensus_8190#1 TCGGACTTAACACTCTAAGCTTATTTCCAGCGAATTCTGATGTATCTTCAGAAGTTAGTG 839
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 AGCAATGCTCA--CAGTATACTCCTCATAGACATTTGAAGGGA-TCACATTAAATTTGGT 947
consensus_8190#1 AATGATTTATGTCCATATTGGCCGTTATATCTACGGGACCTGAGTCGCTTTTGAATTTCC 899
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 AATGAATGAATGCTTTATCCAATCCACAGCAACTTCTGCCAGAAGAATATAGGTTACATC 1007
consensus_8190#1 GATACCTAAGACCCGTCGGCAA---AAAGCAATCTTCATCTCTAGTCGGTTGGTCATAAC 956
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 AATGAGAATGGTTTGAAGATCATCTAAATTCCATCCACTTTCATTCATATTACGGCATAC 1067
consensus_8190#1 CTGTGAAACCAAAAGGAGGTTTTCTTGACGATATTCGAATTTCCTTTTCTGAAAGAATAG 1016
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 AATAATTGAAAACCAAACACAATAGTGAAATCGTTCACGTACATCAGCACATGCAATTTG 1127
consensus_8190#1 GCCTCGTG----CCGAAT----TNTTGGCTCCG--------------------------- 1041
consensus_8190#2 ------------------------------------------------------------
consensus_8190#0 AAATAAATTCGTTTTTCCCCATTTTACGCCTCGTGCCGAAATNTTGGCCT 1177
consensus_8190#1 --------------------------------------------------
consensus_8190#2 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||