These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1017 fasta sequence [CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTACGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAATATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAAGGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCATGAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTAAAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAGAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCANAACAAAGATGACA-TNTGCCCGTANAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAATNGCANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGNTGCGTGAAGTAGAACTGCAAAAATCTCGAAGTGTCGGGCTANATGTTCTAAAGCAACTTATGGCTCTGGNTTAAAGTGCGAGGACGTAAAGAAGAGCTANCCGTTGTTTCAATCAAGATTAAGNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTCGGAACATNAAAAT] [+] EMBL CD081907 [CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTACGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAATATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAAGGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCATGAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTAAAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAGAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCANAACAAAGATGACA TNTGCCCGTANAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAATNGCANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGNTGCGTGAAGTAGAACTGCAAAAATCTCGAAGTGTCGGGCTANATGTTCTAAAGCAACTTATGGCTCTGGNTTAAAGTGCGAGGACGTAAAGAAGAGCTANCCGTTGTTTCAATCAAGATTAAGNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTCGGAACATNAAAAT] [-] EMBL CD120757 [ GAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTAAAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAGAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCTGATCGTGAGTATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACAGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCAGCTAGCTCGTCATTTGACATTTGGTCTAGTCTTGCAAAAC AAGATGACAGTTTGC ] consensusID : consensus_8200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 703 fasta sequence [GACAACCAATCATGGAATGTGCAGAGACTTATCACGAATGGTATGCTACACGGTGACGAGCGGGAACGTCAGAAAGCAAAGGAATATGTTCAGAGACCACGAAGGACGCTAAAACTATTAAGACAAGGGCGTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAA-ATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGTTGCGTGGAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTGGGTTTAAAGTGCGGAGGAACGTTAAAAGAACGAGCTAGCCGTTTGTTTTCAATCAAGG] [+] EMBL CD179624 [GACAACCAATCATGGAATGTGCAGAGACTTATCACGAATGGTATGCTACACGGTGACGAGCGGGAACGTCAGAAAGCAAAGGAATATGTTCAGAGACCACGAAGGACGCTAAAACTATTAAGACAAGGGCGTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAA ATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACGGCGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCCAAACAAGATGACAATTTGC ] [-] EMBL CD133662 [ CTGAACATAGCTTTTTTGATCGTGAATATGAACGACAAAAACGTAAATATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTGCCCGTAAAAGATG ] [+] EMBL CD134007 [ GGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGTTGCGTGGAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTG ] [+] EMBL CD059244 [ ACAAGATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAAGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGTTGCATGAAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTGGGTTTAAAGTGCGGAGGAACGTTAAAAGAACGAGCTAGCCGTTTGTTTTCAATCAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8200#0 CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTA 60 consensus_8200#1 ------------------------------------------------------------ consensus_8200#0 CGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAAT 120 consensus_8200#1 ------------------------------------------------------------ consensus_8200#0 ATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAA 180 consensus_8200#1 ------------------------------------------------------------ consensus_8200#0 GGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCAT 240 consensus_8200#1 -----------------------------------------------GACAACCAATCAT 13 ************* consensus_8200#0 GAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTA 300 consensus_8200#1 GGAATGTGCAGAGACTTATCACG------------------------------------- 36 * ******************* * consensus_8200#0 AAGGAATGGTATGCTACG-GCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGA 359 consensus_8200#1 ----AATGGTATGCTACACGGTGACGAGCGGGAACGTCAGAAAGCAAAGGAATATGTTCA 92 ************* * **************** ******** *********** * consensus_8200#0 GAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTC 419 consensus_8200#1 GAGACCACGAAGGACGCTAAAACTATTAAGACAAGGGCGTTTACCTGAACATAGCTTTTC 152 ***** ***** * * ********* *** ** * ********************* consensus_8200#0 TGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGA 479 consensus_8200#1 TGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGA 212 ************************************************************ consensus_8200#0 TTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTC 539 consensus_8200#1 TTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACGGAGATTCAGTCTGTAGCTTC 272 ***************************** ****************************** consensus_8200#0 TTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGA 599 consensus_8200#1 TTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGA 332 ************************************************************ consensus_8200#0 GCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTC 659 consensus_8200#1 GCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTC 392 ************************************************************ consensus_8200#0 TAGTCTTGCANAACAAAGATGACA-TNTGCCCGTANAAGATGATACCGAAGCCACAACGG 718 consensus_8200#1 TAGTCTTGCAAAACAA-GATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGG 451 ********** ***** ******* * ******** ************************ consensus_8200#0 ACTCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAAT 778 consensus_8200#1 ACTCTACAGGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAAT 511 ************************ ************* * * ******** ******** consensus_8200#0 NGCANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGN 838 consensus_8200#1 TGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGT 571 *** ***** ******* **** ********** * **** * **** consensus_8200#0 TGCGTGAAGTAGA-ACTGCA-AAAATCTCGAAGTGTCGGGCT-ANATGTTCT-AAAGCAA 894 consensus_8200#1 TGCGTGGAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAA 631 ****** ****** ****** *************** **** * ******* ******* consensus_8200#0 CTT--ATGGCTCTGGNTT-AAAGTGCGAGG--ACGT--AAAGAA-GAGCTANCCGTTG-- 944 consensus_8200#1 CCTTAATGGCTCTGGGTTTAAAGTGCGGAGGAACGTTAAAAGAACGAGCTAGCCGTTTGT 691 * * ********** ** ******** * **** ****** ****** ***** consensus_8200#0 TTTCAATCAAGATTAAGNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTC 1004 consensus_8200#1 TTTCAATCAAGG------------------------------------------------ 703 *********** consensus_8200#0 GGAACATNAAAAT 1017 consensus_8200#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||