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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1017 fasta sequence
[CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTACGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAATATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAAGGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCATGAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTAAAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAGAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCANAACAAAGATGACA-TNTGCCCGTANAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAATNGCANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGNTGCGTGAAGTAGAACTGCAAAAATCTCGAAGTGTCGGGCTANATGTTCTAAAGCAACTTATGGCTCTGGNTTAAAGTGCGAGGACGTAAAGAAGAGCTANCCGTTGTTTCAATCAAGATTAAGNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTCGGAACATNAAAAT]
[+] EMBL CD081907 [CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTACGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAATATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAAGGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCATGAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTAAAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAGAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCANAACAAAGATGACA TNTGCCCGTANAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAATNGCANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGNTGCGTGAAGTAGAACTGCAAAAATCTCGAAGTGTCGGGCTANATGTTCTAAAGCAACTTATGGCTCTGGNTTAAAGTGCGAGGACGTAAAGAAGAGCTANCCGTTGTTTCAATCAAGATTAAGNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTCGGAACATNAAAAT]
[-] EMBL CD120757 [ GAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTAAAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAGAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCTGATCGTGAGTATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACAGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCAGCTAGCTCGTCATTTGACATTTGGTCTAGTCTTGCAAAAC AAGATGACAGTTTGC ]
consensusID : consensus_8200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 703 fasta sequence
[GACAACCAATCATGGAATGTGCAGAGACTTATCACGAATGGTATGCTACACGGTGACGAGCGGGAACGTCAGAAAGCAAAGGAATATGTTCAGAGACCACGAAGGACGCTAAAACTATTAAGACAAGGGCGTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAA-ATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGTTGCGTGGAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTGGGTTTAAAGTGCGGAGGAACGTTAAAAGAACGAGCTAGCCGTTTGTTTTCAATCAAGG]
[+] EMBL CD179624 [GACAACCAATCATGGAATGTGCAGAGACTTATCACGAATGGTATGCTACACGGTGACGAGCGGGAACGTCAGAAAGCAAAGGAATATGTTCAGAGACCACGAAGGACGCTAAAACTATTAAGACAAGGGCGTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAA ATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACGGCGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCCAAACAAGATGACAATTTGC ]
[-] EMBL CD133662 [ CTGAACATAGCTTTTTTGATCGTGAATATGAACGACAAAAACGTAAATATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTGCCCGTAAAAGATG ]
[+] EMBL CD134007 [ GGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGTTGCGTGGAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTG ]
[+] EMBL CD059244 [ ACAAGATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAAGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGTTGCATGAAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTGGGTTTAAAGTGCGGAGGAACGTTAAAAGAACGAGCTAGCCGTTTGTTTTCAATCAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8200#0 CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTA 60
consensus_8200#1 ------------------------------------------------------------
consensus_8200#0 CGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAAT 120
consensus_8200#1 ------------------------------------------------------------
consensus_8200#0 ATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAA 180
consensus_8200#1 ------------------------------------------------------------
consensus_8200#0 GGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCAT 240
consensus_8200#1 -----------------------------------------------GACAACCAATCAT 13
*************
consensus_8200#0 GAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTA 300
consensus_8200#1 GGAATGTGCAGAGACTTATCACG------------------------------------- 36
* ******************* *
consensus_8200#0 AAGGAATGGTATGCTACG-GCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGA 359
consensus_8200#1 ----AATGGTATGCTACACGGTGACGAGCGGGAACGTCAGAAAGCAAAGGAATATGTTCA 92
************* * **************** ******** *********** *
consensus_8200#0 GAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTC 419
consensus_8200#1 GAGACCACGAAGGACGCTAAAACTATTAAGACAAGGGCGTTTACCTGAACATAGCTTTTC 152
***** ***** * * ********* *** ** * *********************
consensus_8200#0 TGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGA 479
consensus_8200#1 TGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGA 212
************************************************************
consensus_8200#0 TTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTC 539
consensus_8200#1 TTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACGGAGATTCAGTCTGTAGCTTC 272
***************************** ******************************
consensus_8200#0 TTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGA 599
consensus_8200#1 TTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGA 332
************************************************************
consensus_8200#0 GCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTC 659
consensus_8200#1 GCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTC 392
************************************************************
consensus_8200#0 TAGTCTTGCANAACAAAGATGACA-TNTGCCCGTANAAGATGATACCGAAGCCACAACGG 718
consensus_8200#1 TAGTCTTGCAAAACAA-GATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGG 451
********** ***** ******* * ******** ************************
consensus_8200#0 ACTCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAAT 778
consensus_8200#1 ACTCTACAGGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAAT 511
************************ ************* * * ******** ********
consensus_8200#0 NGCANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGN 838
consensus_8200#1 TGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGT 571
*** ***** ******* **** ********** * **** * ****
consensus_8200#0 TGCGTGAAGTAGA-ACTGCA-AAAATCTCGAAGTGTCGGGCT-ANATGTTCT-AAAGCAA 894
consensus_8200#1 TGCGTGGAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAA 631
****** ****** ****** *************** **** * ******* *******
consensus_8200#0 CTT--ATGGCTCTGGNTT-AAAGTGCGAGG--ACGT--AAAGAA-GAGCTANCCGTTG-- 944
consensus_8200#1 CCTTAATGGCTCTGGGTTTAAAGTGCGGAGGAACGTTAAAAGAACGAGCTAGCCGTTTGT 691
* * ********** ** ******** * **** ****** ****** *****
consensus_8200#0 TTTCAATCAAGATTAAGNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTC 1004
consensus_8200#1 TTTCAATCAAGG------------------------------------------------ 703
***********
consensus_8200#0 GGAACATNAAAAT 1017
consensus_8200#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||