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Schistosoma mansoni
cluster # 8200 cluster # 8200       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8200#0 length = 1017 sequences # 2  
consensus_8200#1 length = 703 sequences # 4  

consensusID : consensus_8200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1017
fasta sequence
                              [CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTACGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAATATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAAGGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCATGAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTAAAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAGAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCANAACAAAGATGACA-TNTGCCCGTANAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAATNGCANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGNTGCGTGAAGTAGAACTGCAAAAATCTCGAAGTGTCGGGCTANATGTTCTAAAGCAACTTATGGCTCTGGNTTAAAGTGCGAGGACGTAAAGAAGAGCTANCCGTTGTTTCAATCAAGATTAAGNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTCGGAACATNAAAAT]

[+] EMBL CD081907             [CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTACGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAATATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAAGGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCATGAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTAAAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAGAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCANAACAAAGATGACA TNTGCCCGTANAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAATNGCANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGNTGCGTGAAGTAGAACTGCAAAAATCTCGAAGTGTCGGGCTANATGTTCTAAAGCAACTTATGGCTCTGGNTTAAAGTGCGAGGACGTAAAGAAGAGCTANCCGTTGTTTCAATCAAGATTAAGNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTCGGAACATNAAAAT]
[-] EMBL CD120757             [                                                                                                                                                                                                                                                          GAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTAAAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAGAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCTGATCGTGAGTATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACAGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCAGCTAGCTCGTCATTTGACATTTGGTCTAGTCTTGCAAAAC AAGATGACAGTTTGC                                                                                                                                                                                                                                                                                                                                         ]


>consensus_8200#0 CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTA CGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAAT ATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAA GGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCAT GAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTA AAGGAATGGTATGCTACGGCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGAG AGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTCT GATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGAT TCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCT TCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAG CTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCT AGTCTTGCANAACAAAGATGACATNTGCCCGTANAAGATGATACCGAAGCCACAACGGAC TCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAATNG CANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGNTG CGTGAAGTAGAACTGCAAAAATCTCGAAGTGTCGGGCTANATGTTCTAAAGCAACTTATG GCTCTGGNTTAAAGTGCGAGGACGTAAAGAAGAGCTANCCGTTGTTTCAATCAAGATTAA GNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTCGGAACATNAAAAT



consensusID : consensus_8200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 703
fasta sequence
                              [GACAACCAATCATGGAATGTGCAGAGACTTATCACGAATGGTATGCTACACGGTGACGAGCGGGAACGTCAGAAAGCAAAGGAATATGTTCAGAGACCACGAAGGACGCTAAAACTATTAAGACAAGGGCGTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAA-ATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGTTGCGTGGAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTGGGTTTAAAGTGCGGAGGAACGTTAAAAGAACGAGCTAGCCGTTTGTTTTCAATCAAGG]

[+] EMBL CD179624             [GACAACCAATCATGGAATGTGCAGAGACTTATCACGAATGGTATGCTACACGGTGACGAGCGGGAACGTCAGAAAGCAAAGGAATATGTTCAGAGACCACGAAGGACGCTAAAACTATTAAGACAAGGGCGTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGTAAA ATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACGGCGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCCAAACAAGATGACAATTTGC                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD133662             [                                                                                                                                        CTGAACATAGCTTTTTTGATCGTGAATATGAACGACAAAAACGTAAATATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTGCCCGTAAAAGATG                                                                                                                                                                                                                                                                              ]
[+] EMBL CD134007             [                                                                                                                                                                                                                                                            GGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGTTGCGTGGAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTG                                                          ]
[+] EMBL CD059244             [                                                                                                                                                                                                                                                                                                                                                                                                                     ACAAGATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAAGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGTTGCATGAAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTGGGTTTAAAGTGCGGAGGAACGTTAAAAGAACGAGCTAGCCGTTTGTTTTCAATCAAGG]


>consensus_8200#1 GACAACCAATCATGGAATGTGCAGAGACTTATCACGAATGGTATGCTACACGGTGACGAG CGGGAACGTCAGAAAGCAAAGGAATATGTTCAGAGACCACGAAGGACGCTAAAACTATTA AGACAAGGGCGTTTACCTGAACATAGCTTTTCTGATCGTGAATATGAACGACAAAAACGT AAAATTGCTTACGAACTACGGGGAGCCTTGGATTCAGCCATAGAAAGTGTTAAGAAAGAA AGGAAACAAACGGAGATTCAGTCTGTAGCTTCTTCTGAAAAGCAACTGAATACAAAGCGT ACTCGATTATGGATAGAAGAGATGGACAAAGAGCTGTCTTCGAGTTCTAGTGATGATGAA ATTTCGGCTAGCTCGTCATTTGACATTTGCTCTAGTCTTGCAAAACAAGATGACAATTTG CCCGTAAAAGATGATACCGAAGCCACAACGGACTCTACAGGATTAATTAACAGTGTTAAA ACAGATGCAATTGTTGAAGATAAAAAGGAATTGCAAAATGCTTGTGAAAACACCTCAAAA GAAACTGTCCAACCTTTAACTGACCAACAGTTGCGTGGAGTAGATACTGCAGAAAATCTC GAAGTGTTCGGCTTAGATGTTCTTAAAGCAACCTTAATGGCTCTGGGTTTAAAGTGCGGA GGAACGTTAAAAGAACGAGCTAGCCGTTTGTTTTCAATCAAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8200#0      CTGACTATGGCGTTGTATGGTGCTCCGTTTCCCAGATATGTAGTTTATACAGATGAGTTA 60
consensus_8200#1      ------------------------------------------------------------
                                                                                  

consensus_8200#0      CGTGATGCCTATAATACTGATGATGTTTACTACACGTATAATGGACGCATAGTAAATAAT 120
consensus_8200#1      ------------------------------------------------------------
                                                                                  

consensus_8200#0      ATGGGAGAAATTCCGAAACGTGCTTTGTTGCAAGTGCATTATCGTTTGCGCGGTGGTAAA 180
consensus_8200#1      ------------------------------------------------------------
                                                                                  

consensus_8200#0      GGTGGTTTCGGATCTATGCTACGAGCTATCGGGAGTCAAATCGAGAAGACAACCAATCAT 240
consensus_8200#1      -----------------------------------------------GACAACCAATCAT 13
                                                                     *************

consensus_8200#0      GAAATGTGCAGAGACTTATCAGGTAGGAGAATGCGTGATGTAAACCTGGAAAAAAAATTA 300
consensus_8200#1      GGAATGTGCAGAGACTTATCACG------------------------------------- 36
                      * ******************* *                                     

consensus_8200#0      AAGGAATGGTATGCTACG-GCTGACGAGCGGGAACGTAAGAAAGCAGAGGAATATGTTGA 359
consensus_8200#1      ----AATGGTATGCTACACGGTGACGAGCGGGAACGTCAGAAAGCAAAGGAATATGTTCA 92
                          *************  * **************** ******** *********** *

consensus_8200#0      GAGACGACGAAAACGCCAAGAACTATTAAAACAGGGTCTTTTACCTGAACATAGCTTTTC 419
consensus_8200#1      GAGACCACGAAGGACGCTAAAACTATTAAGACAAGGGCGTTTACCTGAACATAGCTTTTC 152
                      ***** *****     * * ********* *** ** * *********************

consensus_8200#0      TGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGA 479
consensus_8200#1      TGATCGTGAATATGAACGACAAAAACGTAAAATTGCTTACGAACTACGGGGAGCCTTGGA 212
                      ************************************************************

consensus_8200#0      TTCAGCCATAGAAAGTGTTAAGAAAGAAAAGAAACAAACGGAGATTCAGTCTGTAGCTTC 539
consensus_8200#1      TTCAGCCATAGAAAGTGTTAAGAAAGAAAGGAAACAAACGGAGATTCAGTCTGTAGCTTC 272
                      ***************************** ******************************

consensus_8200#0      TTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGA 599
consensus_8200#1      TTCTGAAAAGCAACTGAATACAAAGCGTACTCGATTATGGATAGAAGAGATGGACAAAGA 332
                      ************************************************************

consensus_8200#0      GCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTC 659
consensus_8200#1      GCTGTCTTCGAGTTCTAGTGATGATGAAATTTCGGCTAGCTCGTCATTTGACATTTGCTC 392
                      ************************************************************

consensus_8200#0      TAGTCTTGCANAACAAAGATGACA-TNTGCCCGTANAAGATGATACCGAAGCCACAACGG 718
consensus_8200#1      TAGTCTTGCAAAACAA-GATGACAATTTGCCCGTAAAAGATGATACCGAAGCCACAACGG 451
                      ********** ***** ******* * ******** ************************

consensus_8200#0      ACTCTACAGGATTAATTAACAGTGNTAAAACAGATGCATTNGNTGAAGATANAAAGGAAT 778
consensus_8200#1      ACTCTACAGGATTAATTAACAGTGTTAAAACAGATGCAATTGTTGAAGATAAAAAGGAAT 511
                      ************************ ************* * * ******** ********

consensus_8200#0      NGCANNATGCTNGTGAAAAACACTCANAAGAAACTGTNNCAACTTTNANNCTGACACAGN 838
consensus_8200#1      TGCAAAATGCTTGTGAAAACACCTCAAAAGAAACTGTCCAACCTTTAACTGACCAACAGT 571
                       ***  ***** *******   **** **********   * **** *       **** 

consensus_8200#0      TGCGTGAAGTAGA-ACTGCA-AAAATCTCGAAGTGTCGGGCT-ANATGTTCT-AAAGCAA 894
consensus_8200#1      TGCGTGGAGTAGATACTGCAGAAAATCTCGAAGTGTTCGGCTTAGATGTTCTTAAAGCAA 631
                      ****** ****** ****** ***************  **** * ******* *******

consensus_8200#0      CTT--ATGGCTCTGGNTT-AAAGTGCGAGG--ACGT--AAAGAA-GAGCTANCCGTTG-- 944
consensus_8200#1      CCTTAATGGCTCTGGGTTTAAAGTGCGGAGGAACGTTAAAAGAACGAGCTAGCCGTTTGT 691
                      * *  ********** ** ********  *  ****  ****** ****** *****   

consensus_8200#0      TTTCAATCAAGATTAAGNCTGNCAATANCTGTAAGTTCTGGGAAACGNAAATTTGTTTTC 1004
consensus_8200#1      TTTCAATCAAGG------------------------------------------------ 703
                      ***********                                                 

consensus_8200#0      GGAACATNAAAAT 1017
consensus_8200#1      -------------
                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)