cluster # 8201

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8201 cluster # 8201 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8201#0 length = 1116 sequences # 4

consensus_8201#1 length = 529 sequences # 1
consensus_8201#2 length = 483 sequences # 1

consensusID : consensus_8201#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1116
fasta sequence

                              [ATAATTAAATAGTTCAGCCAATTGCTGTTAATTTACAGTTTTGTTAAGGAGATTCAAAAGAAAAAGAATGTTTCCACAAAAATAATTGGCGATTTACCTTCGTCATTATTTACTAATACAACTATTTCAGCTGACATTATACATTTGATCAATAAATCGAATATATGTTACACAAACTATCACCTTTTACACTCCTTGCTAAACCTGATACACAAATGTTTCAGTGTTATATTATGCATCAAGTGTCATTATGAAACGAAAAACGCATGTTTAACACAACAGATATCCACAAAACAACAACTTAAACAAAGTAAAGAAACAGATTACATTTTTAAACTAAAAAATTTGACCGATAATACACCAAAGATTTGAAGAGTCTAAATCATAAAATTACAAAAATGATTCTGTTTGCCTTAATATCCATTGTAAACAACGTTTACGACTAGACGATAACATTGACATATTTGATAACATGA-TTCCTGGTCATCACTATCATCATTAATTGACAATTGAATATTCACTTCTTGATAAATACGATTGCATAAAACTTGACGAATTGTTTTATGATAATTATCTAACCAATTCAATTCATTTGCAGTTAACATATCAGAGTTGATAAATTTACGTTGAAATGGAACTAAAGTGACTGGTTCAAAACTAAGCCATTTAGTATTATCAGTGTCTGGTGAAAATTGAAAAGATCGGTGACTAGTGGAAGTTGATGTAGTACAACTATTACTGTCACTATTGAGAAAATTTTTTGTTTCCACAGGTACAACAAATACTACATTTTCTAATCGTATTCCAAAGTGATCACTCCAATAGTAACCAGGTTCAATGGTAACAACCATATTCTCTTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATTCGACTACCAGATAACCCAATAGGACCTTCATGTACATTAAGAAATGCACCAACACCATGTCCTGTTCCATGAGCATAATTACCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAACCCGGAGTATTCGATGGAAAAATTTGCATAGCAAGTGCAATATGGGCTTTTAAAACAGATGTATAACAATTCTTTTGTTCTAAT]

[+] EMBL SMAA40608            [ATAATTAAATAGTTCAGCCAATTGCTGTTAATTTACAGTTTTGTTAAGGAGATTCAAAAGAAAAAGAATGTTTCCACAAAAATAATTGGCGATTTACCTTCGTCATTATTTACTAATACAACTATTTCAGCTGACATTATACATTTGATCAATAAATCGAATATATGTTACACAAACTATCACCTTTTACACTCCTTGCTAAACCTGATACACAAATGTTTCAGTGTTATATTATGCATCAAGTGTCATTATGAAACGAAAAACGCATGTTTAACACAACAGATATCCACAAAACAACAACTTAAACAAAGTAAAGAAACAGATTACATTTTTAAACTAAAAAATTTGACCGATAATACACCAAAGATTTGAAGAGTCTAAATCATAAAATTACAAAAATGATTCTGTTTGCCTTAATATCCATTGTAAACAACGTTTACGACTAGACGATAACATTGACATATTTGATAACATGA TTCCTGGgagagaac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD196178             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTACGACTAGACGATAACATTGACATATTGNATAACATGATTTCCTGGTCATCACTATCATCATTAATTGACAATTGAATATTCACTTCTTGATAAATACGATTGCATAAAACTTGACGAATTGTTTTATGATAATTATCTAACCAATTCAATTCATTTGCAGTTAACATATCAGAGTTGATAAATTTACGTTGAAATGGAACTAAAGTGACTGGTTCAAAACTAAGCCATTTAGTATTATCAGTGTCTGGTGAAAATTGAAAAGATC                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD133215             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTGGTCATCACTATCATCATTAATTGACAATTGAATATTCACTTCTTGATAAATACGATTGCATAAAACTTGACGAATTGTTTTATGATAATTATCTAACCAATTCAATTCATCTGCAGTTAACATATCAGAGTTGATAAATTTACGTTGAAATGGAACTAAAGTGACTGGTTCAAAACTAAGCCATTTAGTATTATCAGTGTCTGGTGAAAATTGAAAAGATCGGTGACTAGTGGAAGTTGATGTAGTACAACTATTACTGTCACTATTGAGAAAATTTTTTGTTTCCACAGGTACAACAAATACTACATTTTCTAATCGTATTCCAAAGTGATCACTCCAATAGTAACCAGGTTCAATGGTAACAACCATATTCTCTTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATTCGACTACCAGATAACCCAATAGGACCTTCATGTACATTAAGAAATGCACCAACACCATGTCCTGTTCCATGAGCATAATTACCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAACCCGGAGTATTCGATGGAAAAATTTGCATAGCAAGTGCAATATGGGCTTTTAAAACAGATGTATAACAATTCTTTTGTTCTAAT]
[+] EMBL CD196244             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AACATATCAGAGCTGATAAATTTACGTTGAAATGGAACTAAAGTGACTGGTTCAAAACTAAGCCATTTAGTATTATCAGTGACTGGTGAAAATTGAAAAGATCGGTGACTAGTGGAAGTTGATGTAGTACAACTATTACTGTCACTATTGAGAAAATTTTTTGTTTCCACAGGTACAACAAATACTACATTTTCTAATCGTATTCCAAAGTGATCACTCCAATAGTAACCAGGTTCAATGGTAACAACCATATTCTCTTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATTCGACTACCAGATAACCCCATAGNACCTTCATGTACATTAAGA                                                                                                                                                                           ]




>consensus_8201#0
ATAATTAAATAGTTCAGCCAATTGCTGTTAATTTACAGTTTTGTTAAGGAGATTCAAAAG
AAAAAGAATGTTTCCACAAAAATAATTGGCGATTTACCTTCGTCATTATTTACTAATACA
ACTATTTCAGCTGACATTATACATTTGATCAATAAATCGAATATATGTTACACAAACTAT
CACCTTTTACACTCCTTGCTAAACCTGATACACAAATGTTTCAGTGTTATATTATGCATC
AAGTGTCATTATGAAACGAAAAACGCATGTTTAACACAACAGATATCCACAAAACAACAA
CTTAAACAAAGTAAAGAAACAGATTACATTTTTAAACTAAAAAATTTGACCGATAATACA
CCAAAGATTTGAAGAGTCTAAATCATAAAATTACAAAAATGATTCTGTTTGCCTTAATAT
CCATTGTAAACAACGTTTACGACTAGACGATAACATTGACATATTTGATAACATGATTCC
TGGTCATCACTATCATCATTAATTGACAATTGAATATTCACTTCTTGATAAATACGATTG
CATAAAACTTGACGAATTGTTTTATGATAATTATCTAACCAATTCAATTCATTTGCAGTT
AACATATCAGAGTTGATAAATTTACGTTGAAATGGAACTAAAGTGACTGGTTCAAAACTA
AGCCATTTAGTATTATCAGTGTCTGGTGAAAATTGAAAAGATCGGTGACTAGTGGAAGTT
GATGTAGTACAACTATTACTGTCACTATTGAGAAAATTTTTTGTTTCCACAGGTACAACA
AATACTACATTTTCTAATCGTATTCCAAAGTGATCACTCCAATAGTAACCAGGTTCAATG
GTAACAACCATATTCTCTTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTA
ATTCGACTACCAGATAACCCAATAGGACCTTCATGTACATTAAGAAATGCACCAACACCA
TGTCCTGTTCCATGAGCATAATTACCATGAAATTGCCACATTATTCGACGAGATATAACA
TCAAGTCGTGAACCCGGAGTATTCGATGGAAAAATTTGCATAGCAAGTGCAATATGGGCT
TTTAAAACAGATGTATAACAATTCTTTTGTTCTAAT

consensusID : consensus_8201#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [GACTGGTTCAAAACTAAGCCATTTAGTATTATCAGTGTCTGGTGAAAATTGAAAAGATCGGTGACTAGTGGAAGTTGATGTAGTACAACTATTACTGTCACTATTGAGAAAATTTTTTGTTTCCACAGGTACAACAAATACTACATTTTCTAATCGTATTCCAAAGTGATCACTCCAATAGTAACCAGGTTCAATGGTAACAACCAAAAAAAGGAAGAAACACATTTTTTTATTACCATATTCTCTTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATTCGACTACCAGATAACCCAATAGGACCTTCATGTACATTAAGAAATGCACCAACACCATGTCCTGTTCCATGAGCATAATTACCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAACCCGGAGTATTCGATGGAAAAATTTGCATAGCAAGTGCAATATGGGCTTTTAAAACAGATGTATAACAATTCTTTTGTTCTAATGTGATTCACCTAAATGGATTGTACG]

[-] EMBL CD083552             [GACTGGTTCAAAACTAAGCCATTTAGTATTATCAGTGTCTGGTGAAAATTGAAAAGATCGGTGACTAGTGGAAGTTGATGTAGTACAACTATTACTGTCACTATTGAGAAAATTTTTTGTTTCCACAGGTACAACAAATACTACATTTTCTAATCGTATTCCAAAGTGATCACTCCAATAGTAACCAGGTTCAATGGTAACAACCAAAAAAAGGAAGAAACACATTTTTTTATTACCATATTCTCTTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATTCGACTACCAGATAACCCAATAGGACCTTCATGTACATTAAGAAATGCACCAACACCATGTCCTGTTCCATGAGCATAATTACCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAACCCGGAGTATTCGATGGAAAAATTTGCATAGCAAGTGCAATATGGGCTTTTAAAACAGATGTATAACAATTCTTTTGTTCTAATGTGATTCACCTAAATGGATTGTACG]




>consensus_8201#1
GACTGGTTCAAAACTAAGCCATTTAGTATTATCAGTGTCTGGTGAAAATTGAAAAGATCG
GTGACTAGTGGAAGTTGATGTAGTACAACTATTACTGTCACTATTGAGAAAATTTTTTGT
TTCCACAGGTACAACAAATACTACATTTTCTAATCGTATTCCAAAGTGATCACTCCAATA
GTAACCAGGTTCAATGGTAACAACCAAAAAAAGGAAGAAACACATTTTTTTATTACCATA
TTCTCTTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATTCGACTACCA
GATAACCCAATAGGACCTTCATGTACATTAAGAAATGCACCAACACCATGTCCTGTTCCA
TGAGCATAATTACCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAA
CCCGGAGTATTCGATGGAAAAATTTGCATAGCAAGTGCAATATGGGCTTTTAAAACAGAT
GTATAACAATTCTTTTGTTCTAATGTGATTCACCTAAATGGATTGTACG

consensusID : consensus_8201#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [AGTGTCTGGTGGAANATTGGAAAGNTCGGTGACTAGTNGGAAGTTGATGTAGGACCAGCTNNTACCTGTCCACTATTGAAGGNAANTTTTTGTTTCCNCAGGTGCCNACCAAATNCTACATTNTCCTAATCGTATNCCCAAAGTGATCACTCCAATAGTNAACCAGGTTCAATGGTANCAGCCATATTCCTCNTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATNCGACTACCAGATAACCCNATAGGACCTTCATGTACATTAAGNAATGCACCNACACCATGTCCTGTTCCATGAGCATAATTAGCCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAACCCGGAGTATTCGATGGAGAAANTTNCATANCAAGTGCAATATGGGCTTNTNAAACAGATGTATAACAATTCTNTTGTTCTNATNTTGATTCACCTANATGGANTGTACNCNTTA]

[-] EMBL SM7082               [AGTGTCTGGTGGAANATTGGAAAGNTCGGTGACTAGTNGGAAGTTGATGTAGGACCAGCTNNTACCTGTCCACTATTGAAGGNAANTTTTTGTTTCCNCAGGTGCCNACCAAATNCTACATTNTCCTAATCGTATNCCCAAAGTGATCACTCCAATAGTNAACCAGGTTCAATGGTANCAGCCATATTCCTCNTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATNCGACTACCAGATAACCCNATAGGACCTTCATGTACATTAAGNAATGCACCNACACCATGTCCTGTTCCATGAGCATAATTAGCCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAACCCGGAGTATTCGATGGAGAAANTTNCATANCAAGTGCAATATGGGCTTNTNAAACAGATGTATAACAATTCTNTTGTTCTNATNTTGATTCACCTANATGGANTGTACNCNTTA]




>consensus_8201#2
AGTGTCTGGTGGAANATTGGAAAGNTCGGTGACTAGTNGGAAGTTGATGTAGGACCAGCT
NNTACCTGTCCACTATTGAAGGNAANTTTTTGTTTCCNCAGGTGCCNACCAAATNCTACA
TTNTCCTAATCGTATNCCCAAAGTGATCACTCCAATAGTNAACCAGGTTCAATGGTANCA
GCCATATTCCTCNTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATNCG
ACTACCAGATAACCCNATAGGACCTTCATGTACATTAAGNAATGCACCNACACCATGTCC
TGTTCCATGAGCATAATTAGCCATGAAATTGCCACATTATTCGACGAGATATAACATCAA
GTCGTGAACCCGGAGTATTCGATGGAGAAANTTNCATANCAAGTGCAATATGGGCTTNTN
AAACAGATGTATAACAATTCTNTTGTTCTNATNTTGATTCACCTANATGGANTGTACNCN
TTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8201#0      ATAATTAAATAGTTCAGCCAATTGCTGTTAATTTACAGTTTTGTTAAGGAGATTCAAAAG 60
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      AAAAAGAATGTTTCCACAAAAATAATTGGCGATTTACCTTCGTCATTATTTACTAATACA 120
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      ACTATTTCAGCTGACATTATACATTTGATCAATAAATCGAATATATGTTACACAAACTAT 180
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      CACCTTTTACACTCCTTGCTAAACCTGATACACAAATGTTTCAGTGTTATATTATGCATC 240
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      AAGTGTCATTATGAAACGAAAAACGCATGTTTAACACAACAGATATCCACAAAACAACAA 300
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      CTTAAACAAAGTAAAGAAACAGATTACATTTTTAAACTAAAAAATTTGACCGATAATACA 360
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      CCAAAGATTTGAAGAGTCTAAATCATAAAATTACAAAAATGATTCTGTTTGCCTTAATAT 420
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      CCATTGTAAACAACGTTTACGACTAGACGATAACATTGACATATTTGATAACATGATTCC 480
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      TGGTCATCACTATCATCATTAATTGACAATTGAATATTCACTTCTTGATAAATACGATTG 540
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      CATAAAACTTGACGAATTGTTTTATGATAATTATCTAACCAATTCAATTCATTTGCAGTT 600
consensus_8201#1      ------------------------------------------------------------
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      AACATATCAGAGTTGATAAATTTACGTTGAAATGGAACTAAAGTGACTGGTTCAAAACTA 660
consensus_8201#1      --------------------------------------------GACTGGTTCAAAACTA 16
consensus_8201#2      ------------------------------------------------------------
                                                                                  

consensus_8201#0      AGCCATTTAGTATTATCAGTGTCTGGTG-AAAATTGAAAAGATCGGTGACTAGTGG-AAG 718
consensus_8201#1      AGCCATTTAGTATTATCAGTGTCTGGTG-AAAATTGAAAAGATCGGTGACTAGTGG-AAG 74
consensus_8201#2      -----------------AGTGTCTGGTGGAANATTGGAAAGNTCGGTGACTAGTNGGAAG 43
                                       *********** ** **** **** ************ * ***

consensus_8201#0      TTGATGTAGTAC-AACTATTAC-TGTC-ACTATTGA-GAAAATTTTTTGTTTCCACAGGT 774
consensus_8201#1      TTGATGTAGTAC-AACTATTAC-TGTC-ACTATTGA-GAAAATTTTTTGTTTCCACAGGT 130
consensus_8201#2      TTGATGTAGGACCAGCTNNTACCTGTCCACTATTGAAGGNAANTTTTTGTTTCCNCAGGT 103
                      ********* ** * **  *** **** ******** *  ** *********** *****

consensus_8201#0      ACAA--CAAATACTACATTTTC-TAATCGTATTCC-AAAGTGATCACTCCAATAGTAA-C 829
consensus_8201#1      ACAA--CAAATACTACATTTTC-TAATCGTATTCC-AAAGTGATCACTCCAATAGTAA-C 185
consensus_8201#2      GCCNACCAAATNCTACATTNTCCTAATCGTATNCCCAAAGTGATCACTCCAATAGTNAAC 163
                       *    ***** ******* ** ********* ** ******************** * *

consensus_8201#0      CAGGTTCAATGGTAACAACCA--------------------------------TATTC-T 856
consensus_8201#1      CAGGTTCAATGGTAACAACCAAAAAAAGGAAGAAACACATTTTTTTATTACCATATTC-T 244
consensus_8201#2      CAGGTTCAATGGTANCAGCCA--------------------------------TATTCCT 191
                      ************** ** ***                                ***** *

consensus_8201#0      CTTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATTCGACTACCAGATA 916
consensus_8201#1      CTTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATTCGACTACCAGATA 304
consensus_8201#2      CNTGTAAGCCTGGTTCTACTATACCCATACGAGTGTATGCGTTAATNCGACTACCAGATA 251
                      * ******************************************** *************

consensus_8201#0      ACCCAATAGGACCTTCATGTACATTAAGAAATGCACCAACACCATGTCCTGTTCCATGAG 976
consensus_8201#1      ACCCAATAGGACCTTCATGTACATTAAGAAATGCACCAACACCATGTCCTGTTCCATGAG 364
consensus_8201#2      ACCCNATAGGACCTTCATGTACATTAAGNAATGCACCNACACCATGTCCTGTTCCATGAG 311
                      **** *********************** ******** **********************

consensus_8201#0      CATAATTA-CCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAACCC 1035
consensus_8201#1      CATAATTA-CCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAACCC 423
consensus_8201#2      CATAATTAGCCATGAAATTGCCACATTATTCGACGAGATATAACATCAAGTCGTGAACCC 371
                      ******** ***************************************************

consensus_8201#0      GGAGTATTCGATGGAAAAATTTGCATAGCAAGTGCAATATGGGCTTTTAAAACAGATGTA 1095
consensus_8201#1      GGAGTATTCGATGGAAAAATTTGCATAGCAAGTGCAATATGGGCTTTTAAAACAGATGTA 483
consensus_8201#2      GGAGTATTCGATGGAGAAANTTNCATANCAAGTGCAATATGGGCTTNTNAAACAGATGTA 431
                      *************** *** ** **** ****************** * ***********

consensus_8201#0      TAACAATTCTTTTGTTCTAAT------------------------------- 1116
consensus_8201#1      TAACAATTCTTTTGTTCTAATGT-GATTCACCTAAATGGATTGTACG----- 529
consensus_8201#2      TAACAATTCTNTTGTTCTNATNTTGATTCACCTANATGGANTGTACNCNTTA 483
                      ********** ******* **