cluster # 8206

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Schistosoma mansoni
cluster # 8206 cluster # 8206 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8206#0 length = 1029 sequences # 5

consensus_8206#1 length = 303 sequences # 1

consensusID : consensus_8206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1029
fasta sequence

                              [CCTCCGAGGCCAAGAATTGCGGCACGAGGCAGTATTATGCCTTGTTTTGATAAGAAGTTAGAAGCATCTAGAGTGGAGTTTTCGGTACCTTCAAAAAGTATTTCTGACTTTTATGTCCCAGATGTTGATTTGGTCTTGGCTACCAATGAACTGCTTTGCTTCCTTGAATCATTAATTGACGAATCTAATGATACCGTCTCGTTTTCTTTTGCTGAACACACATCTGAAGTTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAAATGTCGCAGGAGAAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAACAAAATGCTTCCTATGTATAGACACAGTGGGAGTGGTTCAGGTGGATACGCGGCATGTATTCTAAAGATGGCAGCAGAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACAC-CTTACCGTCACTTTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCCAGATTTAATAAAGTCCAGACAAATAAAAGTCCACTATCCGTTTGATTATGTAGAGGTGATGGCATGTCCAAATGGTTGTCTTAATGGTGGTGGACAAGTAAAAGAAATTATGGCACAAACAAGCGAACTGTATGCAAGTCTTCCAGTTTTTGAACCAATGTCGAACGATTTGGTAAAGAACTTGTATGAATATATCANATCAAAAGA-CCCTGACCTT-AATACCTACACACTACATACAAAACTGTTCCTAAGATTGAAATCATAAATCCCAGTGCATTAAGGTGGTGAATCACAGATTAACTCGAATGAAATAAATTATTTTTTG]

[+] EMBL CD081363             [CCTCCGAGGCCAAGAATTGCGGCACGAGGCAGTATTATGCCTTGTTTTGATAAGAAGTTAGAAGCATCTAGAGTGGAGTTTTCGGTACCTTCAAAAAGTATTTCTGACTTTTATGTCCCAGATGTTGATTTGGTCTTGGCTACCAATGAACTGCTTTGCTTCCTTGAATCATTAATTGACGAATCTAATGATACCGTCTCGTTTTCTTTTGCTGAACACACATCTGAAGTTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAAATGTCGCAGGAGAAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAACAAAATGCTTCCTATGTATAGACACAGTGGGAGTGGTTCAGGTGGATACGCGGCATGTATTCTAAAGATGGCAGCAGAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACAC CTTACCGTCACTTTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCC                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD065757             [                                                                                                                                                                                                           TTCTTTTGCTGAACACACATCTGAAGGTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAAATGTCGCAGGAGAAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAACAAAATGCTTCCTATGTATAGACACAGTGGGAGTGGTTCAGGTGGATACGCGGCATGTATTCTAAAGATGGCAGCAGAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACGAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACACACTTACCGTCACT                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD185927             [                                                                                                                                                                                                                                                                                                                                                                                          GGTGGATACGCGGCATGTATTCTAAAGATGGCAGCAGAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACAC CTTACCGTCACTTTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCCAGATTTAATAAAGTCCAGACAAATAAAAGTCCACTATCCGTTTGATTATGTAGAGGTGATGGCATGTCCAAATGGTTGTCTTAATGGTGGTGGACAAGTAAAAGAAATTATGGCACAAACAAGCGAACTGTATGCAAGTCTTCCAGTTTTTGAACCAATGTCGAACGATTTGGTAAAGAACTTGTATGAATATATCANATCAAAAGACCCCTGACCTT AATACCTACACACTACATACAAAACTGTTCCTAAGATTGA                                                                    ]
[-] EMBL CD075197             [                                                                                                                                                                                                                                                                                                                                                                                                                                               CAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACAC CTTACCGTCACTTTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCCAGATTTAATAAAGTCCAGACAAATAAAAGTCCACTATCCGTTTGATTATGTAGAGGTGATGGCATGTCCAAATGGTTGTCTTAATGGTGGTGGACAAGTAAAAGAAATTATGGCACAAACAAGCGAACTGTATGCAAGTCTTCCAGTTTTTGAACCAATGTCGAACGATTTGGTAAAGAACTTGTATGAATATATCAAATCAAAAGA CCCTGACCTTAAATACCTACACACTACATACAAAACTGTTCCTAAGATTGAAATCATAAATCCCAGTGCATTAAGGTGGTGAATCACAGATTAACTCGAATGAAATAAATTATTTTTTG]
[-] EMBL CD125914             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CCGTCATTCTGAAACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTTCAATATCTGCGAAAAACGTATCAATT                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_8206#0
CCTCCGAGGCCAAGAATTGCGGCACGAGGCAGTATTATGCCTTGTTTTGATAAGAAGTTA
GAAGCATCTAGAGTGGAGTTTTCGGTACCTTCAAAAAGTATTTCTGACTTTTATGTCCCA
GATGTTGATTTGGTCTTGGCTACCAATGAACTGCTTTGCTTCCTTGAATCATTAATTGAC
GAATCTAATGATACCGTCTCGTTTTCTTTTGCTGAACACACATCTGAAGTTGGAGAAAGT
CAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAAATGTCGCAGGAGAAA
ACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAACAAAATGCTTCCTATGTATAGA
CACAGTGGGAGTGGTTCAGGTGGATACGCGGCATGTATTCTAAAGATGGCAGCAGAAGAA
CTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGAACGTGTGTTAACTCGCTAT
TTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCGTAGTTTG
GCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACACCTTACCGTCACTTTGAAACCCAA
CCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAACTATTGTT
CAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCCAGATTTAATAAAGTCC
AGACAAATAAAAGTCCACTATCCGTTTGATTATGTAGAGGTGATGGCATGTCCAAATGGT
TGTCTTAATGGTGGTGGACAAGTAAAAGAAATTATGGCACAAACAAGCGAACTGTATGCA
AGTCTTCCAGTTTTTGAACCAATGTCGAACGATTTGGTAAAGAACTTGTATGAATATATC
ANATCAAAAGACCCTGACCTTAATACCTACACACTACATACAAAACTGTTCCTAAGATTG
AAATCATAAATCCCAGTGCATTAAGGTGGTGAATCACAGATTAACTCGAATGAAATAAAT
TATTTTTTG

consensusID : consensus_8206#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [TTTTGCTGAACACAGTCATCTGAAGTTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAATGTCGCAGGAGAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAAACAAAATGCTTCCTATGTATAGACCACAGTGGGAAGTGGTTCAAGGTGATACGCGCAATGATATCCTAAAGATGGCAGCAGAGACCTATCCCGGTCCAATTAACGCTGGACATATTAAGGGTTGACGCGTGTGTAACCGCGATATTCACAATCTCGAGATTTCGGAATTAC]

[+] EMBL AI559070             [TTTTGCTGAACACAGTCATCTGAAGTTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAATGTCGCAGGAGAAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAAACAAAATGCTTCCTATGTATAGACCACAGTGGGAAGTGGTTCAAGGTGATACGCGCAATGATATCCTAAAGATGGCAGCAGAGACCTATCCCGGTCCAATTAACGCTGGACATATTAAGGGTTGACGCGTGTGTAACCGCGATATTCACAATCTCGAGATTTCGGAATTAC]




>consensus_8206#1
TTTTGCTGAACACAGTCATCTGAAGTTGGAGAAAGTCAGCGGTTGATATTAGAGAGATTA
TATGAAATATTTTGTGTGAAATGTCGCAGGAGAAACCGGTGTTGCATTTGATCATTTTCC
TTTGCGAGTCAAACAAAATGCTTCCTATGTATAGACCACAGTGGGAAGTGGTTCAAGGTG
ATACGCGCAATGATATCCTAAAGATGGCAGCAGAGACCTATCCCGGTCCAATTAACGCTG
GACATATTAAGGGTTGACGCGTGTGTAACCGCGATATTCACAATCTCGAGATTTCGGAAT
TAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8206#0      CCTCCGAGGCCAAGAATTGCGGCACGAGGCAGTATTATGCCTTGTTTTGATAAGAAGTTA 60
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      GAAGCATCTAGAGTGGAGTTTTCGGTACCTTCAAAAAGTATTTCTGACTTTTATGTCCCA 120
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      GATGTTGATTTGGTCTTGGCTACCAATGAACTGCTTTGCTTCCTTGAATCATTAATTGAC 180
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      GAATCTAATGATACCGTCTCGTTTTCTTTTGCTGAACACA--CATCTGAAGTTGGAGAAA 238
consensus_8206#1      --------------------------TTTTGCTGAACACAGTCATCTGAAGTTGGAGAAA 34
                                                **************  ******************

consensus_8206#0      GTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAAATGTCGCAGGAGA 298
consensus_8206#1      GTCAGCGGTTGATATTAGAGAGATTATATGAAATATTTTGTGTGAAA-TGTCGCAGGAGA 93
                      *********************************************** ************

consensus_8206#0      AAACCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAA-CAAAATGCTTCCTATGTAT 357
consensus_8206#1      AA-CCGGTGTTGCATTTGATCATTTTCCTTTGCGAGTCAAACAAAATGCTTCCTATGTAT 152
                      ** ************************************* *******************

consensus_8206#0      AGAC-ACAGTGGGA-GTGGTTCAGGTGGATACGCGGCATG-TATTCTAAAGATGGCAGCA 414
consensus_8206#1      AGACCACAGTGGGAAGTGGTTCAAGGTGATACGCGCAATGATATCCTAAAGATGGCAGCA 212
                      **** ********* ******** *  ********  *** *** ***************

consensus_8206#0      GAAGAACTATTCTCGGTCAAATTAAAGCCTGACATATTAAAGGATGA-ACGTGTGTTAAC 473
consensus_8206#1      GA-GACCTAT-CCCGGTCCAATTAACGCTGGACATATTAAGGGTTGACGCGTGTGTAACC 270
                      ** ** **** * ***** ****** **  ********** ** ***  ******* * *

consensus_8206#0      TCGCTATTTACAAAATCGAGATATTCAGGAATTAATCTTGTTTAACTCAAAAGAAGACCG 533
consensus_8206#1      GCGATATTCACAATCTCGAGAT--TTCGGAATTAC------------------------- 303
                       ** **** ****  *******  *  *******                          

consensus_8206#0      TAGTTTGGCGGAGTCTCTGCTATCATCTCTTTCAAATCGAACACCTTACCGTCACTTTGA 593
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      AACCCAACCAAAAGCAATGTTAGTATTTGGGATAGCTAATGGATTTCGTAATATCCAAAC 653
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      TATTGTTCAATATCTGCGAAAAACGTATCAATTTAAAAAATGCGATGACCCAGATTTAAT 713
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      AAAGTCCAGACAAATAAAAGTCCACTATCCGTTTGATTATGTAGAGGTGATGGCATGTCC 773
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      AAATGGTTGTCTTAATGGTGGTGGACAAGTAAAAGAAATTATGGCACAAACAAGCGAACT 833
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      GTATGCAAGTCTTCCAGTTTTTGAACCAATGTCGAACGATTTGGTAAAGAACTTGTATGA 893
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      ATATATCANATCAAAAGACCCTGACCTTAATACCTACACACTACATACAAAACTGTTCCT 953
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      AAGATTGAAATCATAAATCCCAGTGCATTAAGGTGGTGAATCACAGATTAACTCGAATGA 1013
consensus_8206#1      ------------------------------------------------------------
                                                                                  

consensus_8206#0      AATAAATTATTTTTTG 1029
consensus_8206#1      ----------------