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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1404 fasta sequence
[CCAGCACCGGTGGACGTTCAGGAACTATACCGAGCTTCCCATCAACTTCCACGTCCTGGCTACACTTCTGGAATACTCTATGGTCGAGCGGTTAGCTTACCTCGACCATTTATCGGTGTAGAAAATGGTGATACTCTGCTAGATCAAAGTACATTATCTGGACATGTTCCAGTTGCAAGTTCAGGTATACGTGGATCTTTATCAACAACTTTGAGAACAATTCCATCACGTCATAGTTATCATCCAGGTGGACATTCCAATCATTCAGGTGAAGCTATCAATGGTCCTGATCGTACAGTTACTGTATCGGAATCATTGAATACTAATTTTATCGAAAATGAATCACGTCCAATTGGCTTTCATGATGGATTAGGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAATCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCTAGGACCGTAGCTGGTCTGCCTAGTTCTGTAACAGGTCTTCGACCAGTTGGCTTACCACCACATCATCCTTATCATCATCATCATTACAAAAGTAGTAGTTCAGCGATGAGGCGTGGACGTACTAGTACTCCAGCACCAGCTACAGGTGGTAGTGGTATGGGTTATTTAACTGATCCTGATCTACTAGATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAATATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGTC-AAATCAATTATTGAAAGGAGTGGATAGAACACAGTTAGAGTGTTATTTATCAACGGATGAATTTGAACGTTTGTTCAATATGTGCCCTGAAGCATTTCAACGTTTACCTGAATGGAAAGAAATGATTTANAAAGGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAAACAACGTTTCCCAGCCAAATAAAAGCCGATTGATGATGATGATGATGAGGATNACAATGACAATAATGATGAATATGTCCCAAGAAGTAATGGAACTAATTTATTGATTTTATTTATTCAACAATTTAAGAATGAAGAAAAACAAACACCCAGTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAATATGTTTGGATAAAAATGATGATTTATTGTTGAAATATATATCAACTTCTTTTTGCCCTTTTTTGTTCTTGATAAATTTCATCATATGGCACAATATCTTCGTGTTTATCTCCTGCACTACATTTTGTGTGTGTGTGTGTTCATAAGGCGTCAGTAAGAGATTGTAACGATCTCCTTCATCGTCATCCTGATCAATATAACACTGATAGTAGCTCCATTACACCTATTTGATAAAGAGGAAACAAAATTGAATGATACGGTTAATT]
[-] EMBL CD098463 [CCAGCACCGGTGGACGTTCAGGAACTATACCGAGCTTCCCATCAACTTCCACGTCCTGGCTACACTTCTGGAATACTCTATGGTCGAGCGGTTAGCTTACCTCGACCATTTATCGGTGTAGAAAATGGTGATACTCTGCTAGATCAAAGTACATTATCTGGACATGTTCCAGTTGCAAGTTCAGGTATACGTGGATCTTTATCAACAACTTTGAGAACAATTCCATCACGTCATAGTTATCATCCAGGTGGACATTCCAATCATTCAGGTGAAGCTATCAATGGTCCTGATCGTACAGTTACTGTATCGGAATCATTGAATACTAATTTTATCGAAAATGAATCACGTCCAATTGGCTTTCATGATGGATTAGGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAATCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCCAGGACCGTA ]
[-] EMBL CD110998 [ GCTTACCTCGACCATTTATCGGTGTAGAAAATGGTGATACTCTGCTAGATCAAAGTACATTATCTGGACATGTTCCAGTTGCAAGTTCAGGTATACGTGGATCTTTATCAACAACTTTGAGAACAATTCCATCACGTCATAGTTATCATCCAGGTGGACATTCCAATCATTCAGGTGAAGCTATCAATGGTCCTGATCGTACAGTTACTGTATCGGAATCATTGAATACTAATTTTATCGAAAATGAATCACGTCCAATTGGCTTTCATGATGGATTAGGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAATCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCTAGGACCGTA ]
[+] EMBL CD137811 [ GGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAATCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCTAGGACCGTAGCTGGTCTGCCTAGTTCTGTAACAGGTCTTCGACCAGTTGGCTTACCACCACATCATCCTTATCATCATCATCATTACAAAAGTAGTAGTTCAGCGATGAGGCGTGGACGTACTAGTACTCCAGCACCAGCTACAGGTGGTAGTGGTATGGGTTATTTAACTGATCCTGATCTACTAGATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAATATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGTC AAATCAATTATTGAAAGGAGTGGATAGAACACAGTTAGAGTGTTATTTATCAACGGATGAATTTGAACGTTTGTTCAATATGTGCCCTGAAGCATTTCAACGTTTACCTGAATGGAAAGAAATGATTTANAAAGGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAAACAACGTTTCCCAGCCAAATAAAAGCCGATTGATGATGATGATGATGAGGATNACAAT ]
[-] EMBL CD114000 [ TACTGCATCATCATCGAAATATGAACAGTCTTTCAAAATTTATCTTTATGAAGTGTTATAATCATCGTCTCAATCAATTATTGAAAGGAGTGGATAGAACACAGTTAGAGTGTTATTTATCACCGGA ]
[+] EMBL CD090922 [ ggtggCATCCTAATAAAAGCCGATTGATGATGATGATGATGAGGATAACAATGACAATAATGATGAATATGTCCCAAGAAGTAATGGAACTAATTTATTGATTTTATTTATTCAACAATTTAAGAATGAAGAAAAACAAACACCCAGTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAATATGTTTGGATAAAAATGATGATTTATTGTTGAAATATATATCAACTTCTTTTTGCCCTTTTTTGTTCTTGATAAATTTCATCATATGGCACAATATCTTCGTGTTTATCTCCTGCACTACATTTTGTGTGTGTGTGTGTTCATAAGGCGTCAGTAAGAGATTGTAACGATCTCCTTCATCGTCATCCTGATCAATATAACACTGATAGTAGCTCCATTACACCTATTTGATAAAGAGGAAACAAAATTGAATGATACGGTTAATT]
consensusID : consensus_8210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence
[TCCATCAGATGCCTGGGTTATTTAACTGATCCTGATCTACTAGATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAATATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGCCAAATCAATTATTGAAAGGAGTGGATACAACACAGTTAGAGTGGTATTTATCAACGGATGAATTTGAACGTTTGCTCAATATGTGCCCTGAATCATTTCAACGTTTACCTGAATGGAAAAGAAATGATTTAAAAAAGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAACAAACGTTTCCCAGCCAAATAAAAACCGATTGATGATGATGATGATGAGGATAACAATGACAATAATGATGAATATGTCCCAAGAAGTAATGGAACTAATTTATTGATTCTATTTATTCAACAATTTAAGAATGAAGAAAAACAAACACCCATTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAATATGTTTGGATAAAAATGATGATTTATTGTTGGAATAT]
[+] EMBL CD114120 [TCCATCAGATGCCTGGGTTATTTAACTGATCCTGATCTACTAGATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAATATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGCCAAATCAATTATTGAAAGGAGTGGATACAACACAGTTAGAGTGGTATTTATCAACGGATGAATTTGAACGTTTGCTCAATATGTGCCCTGAATCATTTCAACGTTTACCTGAATGGAAAAGAAATGATTTAAAAAAGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAACAAACGTTTCCCAGCCAAATAAAAACCGATTGATGATGATGATGATGAGGATAACAATGACAATAATGATGAATATGTCCCAAGAAGTAATGGAACTAATTTATTGATTCTATTTATTCAACAATTTAAGAATGAAGAAAAACAAACACCCATTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAATATGTTTGGATAAAAATGATGATTTATTGTTGGAATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8210#0 CCAGCACCGGTGGACGTTCAGGAACTATACCGAGCTTCCCATCAACTTCCACGTCCTGGC 60
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 TACACTTCTGGAATACTCTATGGTCGAGCGGTTAGCTTACCTCGACCATTTATCGGTGTA 120
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 GAAAATGGTGATACTCTGCTAGATCAAAGTACATTATCTGGACATGTTCCAGTTGCAAGT 180
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 TCAGGTATACGTGGATCTTTATCAACAACTTTGAGAACAATTCCATCACGTCATAGTTAT 240
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 CATCCAGGTGGACATTCCAATCATTCAGGTGAAGCTATCAATGGTCCTGATCGTACAGTT 300
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 ACTGTATCGGAATCATTGAATACTAATTTTATCGAAAATGAATCACGTCCAATTGGCTTT 360
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 CATGATGGATTAGGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAA 420
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 TCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCTAGGACC 480
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 GTAGCTGGTCTGCCTAGTTCTGTAACAGGTCTTCGACCAGTTGGCTTACCACCACATCAT 540
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 CCTTATCATCATCATCATTACAAAAGTAGTAGTTCAGCGATGAGGCGTGGACGTACTAGT 600
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 ACTCCAGCACCAGCTACAGGTGGTAGTGGTATGGGTTATTTAACTGATCCTGATCTACTA 660
consensus_8210#1 ------------------TCCATCAGATGCCTGGGTTATTTAACTGATCCTGATCTACTA 42
** * *****************************
consensus_8210#0 GATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAA 720
consensus_8210#1 GATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAA 102
************************************************************
consensus_8210#0 TATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGTCAAATCAATTA 780
consensus_8210#1 TATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGCCAAATCAATTA 162
************************************************ ***********
consensus_8210#0 TTGAAAGGAGTGGATAGAACACAGTTAGAGTGTTATTTATCAACGGATGAATTTGAACGT 840
consensus_8210#1 TTGAAAGGAGTGGATACAACACAGTTAGAGTGGTATTTATCAACGGATGAATTTGAACGT 222
**************** *************** ***************************
consensus_8210#0 TTGTTCAATATGTGCCCTGAAGCATTTCAACGTTTACCTGAATGGAAA-GAAATGATTTA 899
consensus_8210#1 TTGCTCAATATGTGCCCTGAATCATTTCAACGTTTACCTGAATGGAAAAGAAATGATTTA 282
*** ***************** ************************** ***********
consensus_8210#0 NAAAGGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAAACAACGTTTCCCAGC 959
consensus_8210#1 AAAAAGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAACAAACGTTTCCCAGC 342
*** **************************************** *************
consensus_8210#0 CAAATAAAAGCCGATTGATGATGATGATGATGAGGATNACAATGACAATAATGATGAATA 1019
consensus_8210#1 CAAATAAAAACCGATTGATGATGATGATGATGAGGATAACAATGACAATAATGATGAATA 402
********* *************************** **********************
consensus_8210#0 TGTCCCAAGAAGTAATGGAACTAATTTATTGATTTTATTTATTCAACAATTTAAGAATGA 1079
consensus_8210#1 TGTCCCAAGAAGTAATGGAACTAATTTATTGATTCTATTTATTCAACAATTTAAGAATGA 462
********************************** *************************
consensus_8210#0 AGAAAAACAAACACCCAGTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAAT 1139
consensus_8210#1 AGAAAAACAAACACCCATTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAAT 522
***************** ******************************************
consensus_8210#0 ATGTTTGGATAAAAATGATGATTTATTGTTGAAATATATATCAACTTCTTTTTGCCCTTT 1199
consensus_8210#1 ATGTTTGGATAAAAATGATGATTTATTGTTGGAATAT----------------------- 559
******************************* *****
consensus_8210#0 TTTGTTCTTGATAAATTTCATCATATGGCACAATATCTTCGTGTTTATCTCCTGCACTAC 1259
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 ATTTTGTGTGTGTGTGTGTTCATAAGGCGTCAGTAAGAGATTGTAACGATCTCCTTCATC 1319
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 GTCATCCTGATCAATATAACACTGATAGTAGCTCCATTACACCTATTTGATAAAGAGGAA 1379
consensus_8210#1 ------------------------------------------------------------
consensus_8210#0 ACAAAATTGAATGATACGGTTAATT 1404
consensus_8210#1 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||