These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1404 fasta sequence [CCAGCACCGGTGGACGTTCAGGAACTATACCGAGCTTCCCATCAACTTCCACGTCCTGGCTACACTTCTGGAATACTCTATGGTCGAGCGGTTAGCTTACCTCGACCATTTATCGGTGTAGAAAATGGTGATACTCTGCTAGATCAAAGTACATTATCTGGACATGTTCCAGTTGCAAGTTCAGGTATACGTGGATCTTTATCAACAACTTTGAGAACAATTCCATCACGTCATAGTTATCATCCAGGTGGACATTCCAATCATTCAGGTGAAGCTATCAATGGTCCTGATCGTACAGTTACTGTATCGGAATCATTGAATACTAATTTTATCGAAAATGAATCACGTCCAATTGGCTTTCATGATGGATTAGGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAATCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCTAGGACCGTAGCTGGTCTGCCTAGTTCTGTAACAGGTCTTCGACCAGTTGGCTTACCACCACATCATCCTTATCATCATCATCATTACAAAAGTAGTAGTTCAGCGATGAGGCGTGGACGTACTAGTACTCCAGCACCAGCTACAGGTGGTAGTGGTATGGGTTATTTAACTGATCCTGATCTACTAGATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAATATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGTC-AAATCAATTATTGAAAGGAGTGGATAGAACACAGTTAGAGTGTTATTTATCAACGGATGAATTTGAACGTTTGTTCAATATGTGCCCTGAAGCATTTCAACGTTTACCTGAATGGAAAGAAATGATTTANAAAGGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAAACAACGTTTCCCAGCCAAATAAAAGCCGATTGATGATGATGATGATGAGGATNACAATGACAATAATGATGAATATGTCCCAAGAAGTAATGGAACTAATTTATTGATTTTATTTATTCAACAATTTAAGAATGAAGAAAAACAAACACCCAGTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAATATGTTTGGATAAAAATGATGATTTATTGTTGAAATATATATCAACTTCTTTTTGCCCTTTTTTGTTCTTGATAAATTTCATCATATGGCACAATATCTTCGTGTTTATCTCCTGCACTACATTTTGTGTGTGTGTGTGTTCATAAGGCGTCAGTAAGAGATTGTAACGATCTCCTTCATCGTCATCCTGATCAATATAACACTGATAGTAGCTCCATTACACCTATTTGATAAAGAGGAAACAAAATTGAATGATACGGTTAATT] [-] EMBL CD098463 [CCAGCACCGGTGGACGTTCAGGAACTATACCGAGCTTCCCATCAACTTCCACGTCCTGGCTACACTTCTGGAATACTCTATGGTCGAGCGGTTAGCTTACCTCGACCATTTATCGGTGTAGAAAATGGTGATACTCTGCTAGATCAAAGTACATTATCTGGACATGTTCCAGTTGCAAGTTCAGGTATACGTGGATCTTTATCAACAACTTTGAGAACAATTCCATCACGTCATAGTTATCATCCAGGTGGACATTCCAATCATTCAGGTGAAGCTATCAATGGTCCTGATCGTACAGTTACTGTATCGGAATCATTGAATACTAATTTTATCGAAAATGAATCACGTCCAATTGGCTTTCATGATGGATTAGGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAATCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCCAGGACCGTA ] [-] EMBL CD110998 [ GCTTACCTCGACCATTTATCGGTGTAGAAAATGGTGATACTCTGCTAGATCAAAGTACATTATCTGGACATGTTCCAGTTGCAAGTTCAGGTATACGTGGATCTTTATCAACAACTTTGAGAACAATTCCATCACGTCATAGTTATCATCCAGGTGGACATTCCAATCATTCAGGTGAAGCTATCAATGGTCCTGATCGTACAGTTACTGTATCGGAATCATTGAATACTAATTTTATCGAAAATGAATCACGTCCAATTGGCTTTCATGATGGATTAGGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAATCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCTAGGACCGTA ] [+] EMBL CD137811 [ GGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAATCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCTAGGACCGTAGCTGGTCTGCCTAGTTCTGTAACAGGTCTTCGACCAGTTGGCTTACCACCACATCATCCTTATCATCATCATCATTACAAAAGTAGTAGTTCAGCGATGAGGCGTGGACGTACTAGTACTCCAGCACCAGCTACAGGTGGTAGTGGTATGGGTTATTTAACTGATCCTGATCTACTAGATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAATATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGTC AAATCAATTATTGAAAGGAGTGGATAGAACACAGTTAGAGTGTTATTTATCAACGGATGAATTTGAACGTTTGTTCAATATGTGCCCTGAAGCATTTCAACGTTTACCTGAATGGAAAGAAATGATTTANAAAGGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAAACAACGTTTCCCAGCCAAATAAAAGCCGATTGATGATGATGATGATGAGGATNACAAT ] [-] EMBL CD114000 [ TACTGCATCATCATCGAAATATGAACAGTCTTTCAAAATTTATCTTTATGAAGTGTTATAATCATCGTCTCAATCAATTATTGAAAGGAGTGGATAGAACACAGTTAGAGTGTTATTTATCACCGGA ] [+] EMBL CD090922 [ ggtggCATCCTAATAAAAGCCGATTGATGATGATGATGATGAGGATAACAATGACAATAATGATGAATATGTCCCAAGAAGTAATGGAACTAATTTATTGATTTTATTTATTCAACAATTTAAGAATGAAGAAAAACAAACACCCAGTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAATATGTTTGGATAAAAATGATGATTTATTGTTGAAATATATATCAACTTCTTTTTGCCCTTTTTTGTTCTTGATAAATTTCATCATATGGCACAATATCTTCGTGTTTATCTCCTGCACTACATTTTGTGTGTGTGTGTGTTCATAAGGCGTCAGTAAGAGATTGTAACGATCTCCTTCATCGTCATCCTGATCAATATAACACTGATAGTAGCTCCATTACACCTATTTGATAAAGAGGAAACAAAATTGAATGATACGGTTAATT] consensusID : consensus_8210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [TCCATCAGATGCCTGGGTTATTTAACTGATCCTGATCTACTAGATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAATATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGCCAAATCAATTATTGAAAGGAGTGGATACAACACAGTTAGAGTGGTATTTATCAACGGATGAATTTGAACGTTTGCTCAATATGTGCCCTGAATCATTTCAACGTTTACCTGAATGGAAAAGAAATGATTTAAAAAAGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAACAAACGTTTCCCAGCCAAATAAAAACCGATTGATGATGATGATGATGAGGATAACAATGACAATAATGATGAATATGTCCCAAGAAGTAATGGAACTAATTTATTGATTCTATTTATTCAACAATTTAAGAATGAAGAAAAACAAACACCCATTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAATATGTTTGGATAAAAATGATGATTTATTGTTGGAATAT] [+] EMBL CD114120 [TCCATCAGATGCCTGGGTTATTTAACTGATCCTGATCTACTAGATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAATATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGCCAAATCAATTATTGAAAGGAGTGGATACAACACAGTTAGAGTGGTATTTATCAACGGATGAATTTGAACGTTTGCTCAATATGTGCCCTGAATCATTTCAACGTTTACCTGAATGGAAAAGAAATGATTTAAAAAAGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAACAAACGTTTCCCAGCCAAATAAAAACCGATTGATGATGATGATGATGAGGATAACAATGACAATAATGATGAATATGTCCCAAGAAGTAATGGAACTAATTTATTGATTCTATTTATTCAACAATTTAAGAATGAAGAAAAACAAACACCCATTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAATATGTTTGGATAAAAATGATGATTTATTGTTGGAATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8210#0 CCAGCACCGGTGGACGTTCAGGAACTATACCGAGCTTCCCATCAACTTCCACGTCCTGGC 60 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 TACACTTCTGGAATACTCTATGGTCGAGCGGTTAGCTTACCTCGACCATTTATCGGTGTA 120 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 GAAAATGGTGATACTCTGCTAGATCAAAGTACATTATCTGGACATGTTCCAGTTGCAAGT 180 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 TCAGGTATACGTGGATCTTTATCAACAACTTTGAGAACAATTCCATCACGTCATAGTTAT 240 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 CATCCAGGTGGACATTCCAATCATTCAGGTGAAGCTATCAATGGTCCTGATCGTACAGTT 300 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 ACTGTATCGGAATCATTGAATACTAATTTTATCGAAAATGAATCACGTCCAATTGGCTTT 360 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 CATGATGGATTAGGTTCACTGACGACATCAGGTTTATCAATGGATGGCTTTATGGCAGAA 420 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 TCCGGTGATGATATAACTATTACTAGTCCACATAATGGTTATTTTTTAAAATCTAGGACC 480 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 GTAGCTGGTCTGCCTAGTTCTGTAACAGGTCTTCGACCAGTTGGCTTACCACCACATCAT 540 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 CCTTATCATCATCATCATTACAAAAGTAGTAGTTCAGCGATGAGGCGTGGACGTACTAGT 600 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 ACTCCAGCACCAGCTACAGGTGGTAGTGGTATGGGTTATTTAACTGATCCTGATCTACTA 660 consensus_8210#1 ------------------TCCATCAGATGCCTGGGTTATTTAACTGATCCTGATCTACTA 42 ** * ***************************** consensus_8210#0 GATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAA 720 consensus_8210#1 GATATTGATGCTTATCCGTCTGTACAAAGTTGGTTAAGGCCTACTGCATCATCATCGAAA 102 ************************************************************ consensus_8210#0 TATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGTCAAATCAATTA 780 consensus_8210#1 TATGAAAAGTCTTTCAAAATTTATCCTTATGAAGTGTTAAAATCATCGCCAAATCAATTA 162 ************************************************ *********** consensus_8210#0 TTGAAAGGAGTGGATAGAACACAGTTAGAGTGTTATTTATCAACGGATGAATTTGAACGT 840 consensus_8210#1 TTGAAAGGAGTGGATACAACACAGTTAGAGTGGTATTTATCAACGGATGAATTTGAACGT 222 **************** *************** *************************** consensus_8210#0 TTGTTCAATATGTGCCCTGAAGCATTTCAACGTTTACCTGAATGGAAA-GAAATGATTTA 899 consensus_8210#1 TTGCTCAATATGTGCCCTGAATCATTTCAACGTTTACCTGAATGGAAAAGAAATGATTTA 282 *** ***************** ************************** *********** consensus_8210#0 NAAAGGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAAACAACGTTTCCCAGC 959 consensus_8210#1 AAAAAGAAATTAGATTTATTATAATCAATTCATTGAAGTGATGAACAAACGTTTCCCAGC 342 *** **************************************** ************* consensus_8210#0 CAAATAAAAGCCGATTGATGATGATGATGATGAGGATNACAATGACAATAATGATGAATA 1019 consensus_8210#1 CAAATAAAAACCGATTGATGATGATGATGATGAGGATAACAATGACAATAATGATGAATA 402 ********* *************************** ********************** consensus_8210#0 TGTCCCAAGAAGTAATGGAACTAATTTATTGATTTTATTTATTCAACAATTTAAGAATGA 1079 consensus_8210#1 TGTCCCAAGAAGTAATGGAACTAATTTATTGATTCTATTTATTCAACAATTTAAGAATGA 462 ********************************** ************************* consensus_8210#0 AGAAAAACAAACACCCAGTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAAT 1139 consensus_8210#1 AGAAAAACAAACACCCATTTAATTTCTAATTTTATTCCTCTTATCATCTTTGATTCGAAT 522 ***************** ****************************************** consensus_8210#0 ATGTTTGGATAAAAATGATGATTTATTGTTGAAATATATATCAACTTCTTTTTGCCCTTT 1199 consensus_8210#1 ATGTTTGGATAAAAATGATGATTTATTGTTGGAATAT----------------------- 559 ******************************* ***** consensus_8210#0 TTTGTTCTTGATAAATTTCATCATATGGCACAATATCTTCGTGTTTATCTCCTGCACTAC 1259 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 ATTTTGTGTGTGTGTGTGTTCATAAGGCGTCAGTAAGAGATTGTAACGATCTCCTTCATC 1319 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 GTCATCCTGATCAATATAACACTGATAGTAGCTCCATTACACCTATTTGATAAAGAGGAA 1379 consensus_8210#1 ------------------------------------------------------------ consensus_8210#0 ACAAAATTGAATGATACGGTTAATT 1404 consensus_8210#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||