cluster # 8211

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Schistosoma mansoni
cluster # 8211 cluster # 8211 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8211#0 length = 519 sequences # 2

consensus_8211#1 length = 309 sequences # 4

consensusID : consensus_8211#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence

                              [TGCAAGATAAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGGCCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTCTTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCTAAGTGAGGTCAAGAATATTTAGAAGGCGATATTTCTTATGATAAAATAAATAATACCTTAATAAGCTGAAATCCTATTTAGCTACATGGTAGTCTACAATAGTACTACGTAATATCTGAGTCCTTTTATTAACCCAAACTAATTTTACCTTGTATATTTGGAATTCTTTAACAGTCTATTCCAAAACTATAGTAGGTAAGAAATAAATTCCAACTGGAATAACAAAATACCACTTTACTGCGATCACTTTGTATTACTTAATGCAAATAAGAAATAAGTTTGTGAATTCTATACAGTGGCCGGTCCCTAAATGATCTGGCACAGCCAAGGTTGGGAAGTCTTCTCTTTC]

[+] EMBL CD076374             [TGCAAGATAAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGGCCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTCTTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCTAAGTGAGGTCAAGAATATTTAGAAGGCGATATTTCTTATGATAAAATAAATAATACCTTAATAAGCTGAAATCCTATTTAGCTACATGGTAGTCTACAATAGTACTACGTAATATCTGAGTCCTTTTATTAACCCAAACTAATTTTACCTTGTATATTTGGAATTCTTTAACAGTCTATTCCAAAACTATAGTAGGTAAGAAATAAATTCCAACTGGAATAACAAAATACCACTTTACTGCGATCACTTTGTATTACTTAATGCAAATAAGAAATAAGTTTGTGAATTCTATACAGTGGCCGGTCCCTAAATGATCTGGCACAGCCAAGGTTGGGAAGTCTTCTCTTTC]
[-] EMBL CD082782             [         AATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGGCCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTCTTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCTAAGTGAGGTCAAGAATATTTAGAAGGCGATATTTCTTATGATAAAATAAATAATACCTTAATAAGCTGAAATCCTATTTAGCTACATGGTAGTCTACAATAGTACTACGTAATATCTGAGTCCTTTTATTAACCCAAACTAATTTTACCTTGTATATTTGGAATTCTTTAACAGTCTATTCCAAAACTATAGTAGGTAAGAAATAAATTCCAACTGGAATAACAAAATACCACTTTACTGCGATCACTTTGTATTACTTAATGCAAATAAGAAATAAGTTTGT AATTCTATACAGTGGCCGGTCCCTAAATGATCTGG                              ]




>consensus_8211#0
TGCAAGATAAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGG
CCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTC
TTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCTAAGTGAGGTC
AAGAATATTTAGAAGGCGATATTTCTTATGATAAAATAAATAATACCTTAATAAGCTGAA
ATCCTATTTAGCTACATGGTAGTCTACAATAGTACTACGTAATATCTGAGTCCTTTTATT
AACCCAAACTAATTTTACCTTGTATATTTGGAATTCTTTAACAGTCTATTCCAAAACTAT
AGTAGGTAAGAAATAAATTCCAACTGGAATAACAAAATACCACTTTACTGCGATCACTTT
GTATTACTTAATGCAAATAAGAAATAAGTTTGTGAATTCTATACAGTGGCCGGTCCCTAA
ATGATCTGGCACAGCCAAGGTTGGGAAGTCTTCTCTTTC

consensusID : consensus_8211#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 309
fasta sequence

                              [AAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGGCCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTCTTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCAGCCTTCCTCGCGCGTTCAATCATTAATTCCAAATGGCTTTGTGACCGACAGCTTATACCTGAAATATGCCTAGGAAGGACAGTTCCATCAGGTCTTAGAAACTGTGATAATATTCGAAACATNCTGTGTGACGAATATTTAAATCCA]

[-] EMBL SM7411               [AAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGGCCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTCTTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCAGCCTTCCTCGCGCGTTCAATCATTAATTCCAAATGGCTTTGTGACCGACAGCTTATACCTGAAATATGCCTAGGAAGGACAGTTCCATCAGGTCTTAGAAACTGTGATAATATTCGAAACATNCTGTGTGACGAATATTTAAATCCA]
[+] EMBL CD073057             [AAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGGCCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTCTTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCAGCCTTCCTCGCGCGTTCAATCATTAATTCCAAATGGCTTTGTGACCGACAGCTTATACCTGAAATATGCCTAGGAAGGACAGTTCCATCAGGTCTTAGAAACTGTGATAATATTCG AACAT                         ]
[+] EMBL CD076894             [AAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTCCATTTGAGGCCCTCGGAAGACCTATCATCTCACTATCATAGTgc                                                                                                                                                                                                                              ]
[+] EMBL BG932397             [                      GAGGGACATACTTAGCTGCTTTTTTTGAGGCCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTCTTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCAGCCT                                                                                                                                               ]




>consensus_8211#1
AAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGGCCCTCGGA
AGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTCTTTCATAC
ACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCAGCCTTCCTCGCGCGTTCA
ATCATTAATTCCAAATGGCTTTGTGACCGACAGCTTATACCTGAAATATGCCTAGGAAGG
ACAGTTCCATCAGGTCTTAGAAACTGTGATAATATTCGAAACATNCTGTGTGACGAATAT
TTAAATCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8211#0      TGCAAGATAAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGG 60
consensus_8211#1      --------AAATTTTTATTACATTACTCAGGAGGGACATACTTAACTGCTTTTTTTGAGG 52
                              ****************************************************

consensus_8211#0      CCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTC 120
consensus_8211#1      CCCTCGGAAGACCTATCATCTCACTATCATAGTACACGTTGAATCGATGACGACCACGTC 112
                      ************************************************************

consensus_8211#0      TTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCTAAGTGAGGTC 180
consensus_8211#1      TTTCATACACGTGACTTCCATCTGGTTTGATTTGTACAGGTAGTAAGCCAGCCT---TCC 169
                      *************************************************    *     *

consensus_8211#0      AAGAATATTTAGAAGGCGATATTTCTTATGATAAAATAAATAATACCTTAATAAGCTGAA 240
consensus_8211#1      TCGCGCGTTCAATCATTAAT--TCCAAATGGCTTTGTGACCGACAGCTTA--TACCTGAA 225
                        *    ** *       **  * *  ***      * *   * * ****   * *****

consensus_8211#0      ATCCTATTTAGCTACATGGTAGTCTACAATAGTACTACGTAATATCTGAGTCCTTTTATT 300
consensus_8211#1      ATA-TGCCTAG--GAAGGACAGTTC-CATCAGGTCT---TAGAAACTGTGA-----TAAT 273
                      **  *   ***    * *  ***   **  **  **   **  * *** *      ** *

consensus_8211#0      AACCCAAACTAATTTTACCTTGTATATTTGGAATTCTTTAACAGTCTATTCCAAAACTAT 360
consensus_8211#1      ATTCGAAACATNCTGTGTGACGAATATTTA-AATCCA----------------------- 309
                      *  * ****    * *     * ******  *** *                        

consensus_8211#0      AGTAGGTAAGAAATAAATTCCAACTGGAATAACAAAATACCACTTTACTGCGATCACTTT 420
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      GTATTACTTAATGCAAATAAGAAATAAGTTTGTGAATTCTATACAGTGGCCGGTCCCTAA 480
consensus_8211#1      ------------------------------------------------------------
                                                                                  

consensus_8211#0      ATGATCTGGCACAGCCAAGGTTGGGAAGTCTTCTCTTTC 519
consensus_8211#1      ---------------------------------------