cluster # 8215

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Schistosoma mansoni
cluster # 8215 cluster # 8215 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8215#0 length = 1239 sequences # 4

consensus_8215#1 length = 901 sequences # 2

consensusID : consensus_8215#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1239
fasta sequence

                              [AAACTTTTTTGCTGGTTTGACCAATTTTATTCCTTTTCTCTTTCCCTCAAATAAACAAACATCCAATTAACATTGTTAACCAGCATAAACAGTTATAATATAAGGATAATATTAGTATTATTAATGATGAGAACTGAAAAAGATTATCAGAGATCTGTTGTATATGAGATTTGTAAAACAAAAAAAAATTATATTCAAACAAGAACAAACAAACTGAAAAGGCACATGGAAAACAAAAGGAGTATGATAACGATCCAAATGATCATAACCTCCTTCTTATATCTTTTTATACAGAATTGAAAAATACTATTTGGTTAGCAATATTAATATTACCAAAAATGTTTGTAGAGATTAACTGGCATGCTGAAATTGAAAAGAATATGTTCTGAAACGTAAAATTGTTATTGTATATAATAAAATTTTTAGACTAGATGATCCGTTCGAAAAAAAGTGGGAAGCAAATGTTATAATTAATGGCGACGACAAAAAAGCCAA-AGTAAGCTGACGGTAGTTCTTTGTCCCTGTTTTGTCGTGGGGTTTGTGTGTTCTTCGTAGTCAATAAATAAAAACTTCTGCCGCGAGCATTATTCTTTATGGTAACCATTACGAAGTGCTTGTTCAAAATTTCTTTTGGATGGTGGTACTAAATGGGCAGGAAGTGTAGGTGGTAGTTCGTAGCCTTCTAGTTTTAATTTCATTATATAACAGACTAAAGCGAATTCATCAGCATCAAGACAACCATCACGATCAATATCACCTAGAATCCAAATATTTTTCAACGCACTATAAGGCAAATTGGATTTGACCATATGACTACGTGAAGCTTCACCGCTGATTTTACCATCCATAGGATTTAGTTTCAGAAACTCTTTATCCCATGGTTCTCTAAAACGATCAACAATCCATTCCTTTTCAAAGCGACCCTCTTCAAATCCTTCACCAGCATGAAAACTGAAAGGTGTACCAGAGGTATCGAATGCACCGCCTGTAACAGCTGGACCATGTGTTTCTACGATTGCATCACGTTCCATTGGAATCATTTGTACTAATTTTGCTACTTCACTCGATAGCATTTCATCGACAGCTTTGATTAGTTTTGGTTGTAGTGCAGGAAATGTTCTAAAATCATGTACTTCTAAAGACTCTTGCATTCTGTTAATGTTAGGGAAATCACCAATTGATATATGTTGTGTACGTGATATGGTATCGTATACTTTGGCCCTCGTGCCGAAATTNCTT]

[+] EMBL CD074194             [AAACTTTTTTGCTGGTTTGACCAATTTTATTCCTTTTCTCTTTCCCTCAAATAAACAAACATCCAATTAACATTGTTAACCAGCATAAACAGTTATAATATAAGGATAATATTAGTATTATTAATGATGAGAACTGAAAAAGATTATCAGAGATCTGTTGTATATGAGATTTGTAAAACAAAAAAAAATTATATTCAAACAAGAACAAACAAACTGAAAAGGCACATGGAAAACAAAAGGAGTATGATAACGATCCAAATGATCATAACCTCCTTCTTATATCTTTTTATACAGAATTGAAAAATACTATTTGGTTAGCAATATTAATATTACCAAAAATGTTTGTAGAGATTAACTGGCATGCTGAAATTGAAAAGAATATGTTCTGAAACGTAAAATTGTTATTGTATATAATAAAATTTTTAGACTAGATGATCCGTTCGAAAAAAAGTGGGAAGCAAATGTTATAATTAATGGCGACGACAAAAAAGCCAA AGTAAGCTGACGGTAGTTCTTTGTCCCTGTTTTGTCGTGGGGTTTGTGTGTTCTTCGTAGTCAATAAATAAAAACTTCTGCCGCGAGCATTATTCTTTATGGTAACCATTACGAAGTGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD059503             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGCGACGACAAAAAAGCCAACAGTAAGCTGACGGCAGTTCTTTGTCCCTGTTTTGTCGTGGGGTTTGAGAGCTCTTCGTAGTCAATAAATAAAAACTTCTGCCGCGAGCATTATTCTTTATGGTAACCATTACGAAGTGCTTGTTCAAAATTTCTTTTGGATGGTGGTACTAAATGGGCAGGAAGTGTAGGTGGTAGTTCGTAGCCTTCTAGTTTTAATTTCATTATATAACAGACTAAAGCGAATTCATCAGCATCAAGACAACCATCACGATCAATATCACCTAGAATCCAAATATTTTTCAACGCACTATAAGGCAAATTGGATTTGACCATATGACTACGTGAAGCTTCACCGCTGATTTTACCATCCATAGGAT                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD080276             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGGTGGTACTAAATGGGCAGGAAGTGTAGGTGGTAGTTCGTAGCCTTCTAGTTTTAATTTCATTATATAACAGACTAAAGCGAATTCATCAGCATCAAGACAACCATCACGATCAATATCACCTAGAATCCAAATATTTTTCAACGCACTATAAGGCAAATTGGATTTGACCATATGACTACGTGAAGCTTCACCGCTGATTTTACCATCCATAGGATTTAGTTTCAGAAACTCTTTATCCCATGGTTCTCTAAAACGATCAACAATCCATTCCTTTTCAAAGCGACCCTCTTCAAATCCTTCACCAGCATGAAAACTGAAAGGTGTACCAGAGGTATCGAATGCACCGCCTGTAACAGCTGGACCATGTGTTTCTACGATTGCATCACGTTCCATTGGAATCATTTGTACTAATTTTGCTACTTCACTCGATAGCATTTCATCGACAGCTTTGATTAGTTTTGGTTGTAGTGCAGGAAATGTTCTAAAATCATGTACTTCTAAAGACTCTTGCATTCTGTTAATGTTAGGGAAATCACCAATTGATATATGTTGTGTACGTGATATGGTATCGTATACTTTGGCCCTCGTGCCGAAATTNCTT]
[-] EMBL CD130363             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCAGCATCTAGACAACCATCACGATCAATATCACCTAGAATCCAAATATTTTTCAACGCACTATAAGGCAAATTGGATTTGACCATATGACTACGTGAAGCTTCACCGCTGATCTTACCATCCATGGGATTTAGTTTCAGAAACTCTTTATCCCATGGTTCTCTAAAACGATCAACA                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_8215#0
AAACTTTTTTGCTGGTTTGACCAATTTTATTCCTTTTCTCTTTCCCTCAAATAAACAAAC
ATCCAATTAACATTGTTAACCAGCATAAACAGTTATAATATAAGGATAATATTAGTATTA
TTAATGATGAGAACTGAAAAAGATTATCAGAGATCTGTTGTATATGAGATTTGTAAAACA
AAAAAAAATTATATTCAAACAAGAACAAACAAACTGAAAAGGCACATGGAAAACAAAAGG
AGTATGATAACGATCCAAATGATCATAACCTCCTTCTTATATCTTTTTATACAGAATTGA
AAAATACTATTTGGTTAGCAATATTAATATTACCAAAAATGTTTGTAGAGATTAACTGGC
ATGCTGAAATTGAAAAGAATATGTTCTGAAACGTAAAATTGTTATTGTATATAATAAAAT
TTTTAGACTAGATGATCCGTTCGAAAAAAAGTGGGAAGCAAATGTTATAATTAATGGCGA
CGACAAAAAAGCCAAAGTAAGCTGACGGTAGTTCTTTGTCCCTGTTTTGTCGTGGGGTTT
GTGTGTTCTTCGTAGTCAATAAATAAAAACTTCTGCCGCGAGCATTATTCTTTATGGTAA
CCATTACGAAGTGCTTGTTCAAAATTTCTTTTGGATGGTGGTACTAAATGGGCAGGAAGT
GTAGGTGGTAGTTCGTAGCCTTCTAGTTTTAATTTCATTATATAACAGACTAAAGCGAAT
TCATCAGCATCAAGACAACCATCACGATCAATATCACCTAGAATCCAAATATTTTTCAAC
GCACTATAAGGCAAATTGGATTTGACCATATGACTACGTGAAGCTTCACCGCTGATTTTA
CCATCCATAGGATTTAGTTTCAGAAACTCTTTATCCCATGGTTCTCTAAAACGATCAACA
ATCCATTCCTTTTCAAAGCGACCCTCTTCAAATCCTTCACCAGCATGAAAACTGAAAGGT
GTACCAGAGGTATCGAATGCACCGCCTGTAACAGCTGGACCATGTGTTTCTACGATTGCA
TCACGTTCCATTGGAATCATTTGTACTAATTTTGCTACTTCACTCGATAGCATTTCATCG
ACAGCTTTGATTAGTTTTGGTTGTAGTGCAGGAAATGTTCTAAAATCATGTACTTCTAAA
GACTCTTGCATTCTGTTAATGTTAGGGAAATCACCAATTGATATATGTTGTGTACGTGAT
ATGGTATCGTATACTTTGGCCCTCGTGCCGAAATTNCTT

consensusID : consensus_8215#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 901
fasta sequence

                              [ATGTAAAGCATGAGAACAAGTAACGAAACTACCAAGTCAAATACTGATTAGTCCCTTCGGAGAAAGAACAATTTAATCGTAACCATCATTCTTACCAGTAATAGTTGTAAGGATTCATCGTTGTTAGAAAATTATTATTTGTGGATAAAACAAAACAATACCAGATATTATTAGCGTAACACAATGGTTTATAATCAGAAACAATTTACGATATTGTACTTTTTCACCAATTTCATGTATTAAATAGATATTCATGGAACAGAATAAAAGGGAAATAATCATAATGATATATAACTATGTATATTCTTACCTATATTATTGTATTGCATTTTCACTTTACAAATAAAAAATTATTTGCTGTTTTGACCAATTTTATTCCTCTATCTCTTTCCCTCAAATAAACAAACATCCAATTAACATTGTTAACCAGCATAAACAGTTATAATATAAGGATAATATTAGTATTATTAATGATGAGAACTGAAAAAGATTATCAGAGATCTGTTGTATATGAGATTTGTAAAACAAAAAAAAATTATATCCAAACAAGAACAAACAAACTGAAAAGGCACATGGAAAACAAAAGGAGTATGATAACGATCCAAATGATCATAACCTCCTTCTTATATCTTTTTATACAGAATTGAAAAATACTATTTGGTTAGCCATATTAATATTACCAAAAATGTTTGTAGAGATTAACTGGCATGCTGAAATTGAAAAGAATATGTTCTGAAACGTAAAATTGTTATTGTATATAATAAAATTTTTAGACTAGATGATCCGTTCGAAAAAAAGTGGGAAGCAAATGTTATAATTAATGGCGACGTCAAAAAAAGCCAAAGTAAGCTGACGGTAGTTGTGTAAAGGTCAAGCTGTTGACATGAGAACATAAGATCCT]

[-] EMBL CD081820             [ATGTAAAGCATGAGAACAAGTAACGAAACTACCAAGTCAAATACTGATTAGTCCCTTCGGAGAAAGAACAATTTAATCGTAACCATCATTCTTACCAGTAATAGTTGTAAGGATTCATCGTTGTTAGAAAATTATTATTTGTGGATAAAACAAAACAATACCAGATATTATTAGCGTAACACAATGGTTTATAATCAGAAACAATTTACGATATTGTACTTTTTCACCAATTTCATGTATTAAATAGATATTCATGGAACAGAATAAAAGGGAAATAATCATAATGATATATAACTATGTATATTCTTACCTATATTATTGTATTGCATTTTCACTTTACAAATAAAAAATTATTTGCTGTTTTGACCAATTTTATTCCTCTATCTCTTTCCCTCAAATAAACAAACATCCAATTAACATTGTTAACCAGCATAAACAGTTATAATATAAGGATAATATTAGTATTATTAATGATGAGAACTGAAAAAGATTATCAGAGATCTGTTGTATATGAGATTTGTAAAACAAAAAAAAATTATATCCAAACAAGAACAAACAAACTGAAAAGGCACATGGAAAACAAAAGGAGTATGATAACGATCCAAATGATCATAACCTCCTTCTTATATCTTTTTATACAGAATTGAAAAATACTATTTGGTTAGCC                                                                                                                                                                                                                                          ]
[-] EMBL CD066973             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACAAAAGGAGTATGATAACGATCCAAATGATCATAACCTCCTTCTTATATCTTTTTATACAGAATTGAAAAATACTATTTGGTTAGCAATATTAATATTACCAAAAATGTTTGTAGAGATTAACTGGCATGCTGAAATTGAAAAGAATATGTTCTGAAACGTAAAATTGTTATTGTATATAATAAAATTTTTAGACTAGATGATCCGTTCGAAAAAAAGTGGGAAGCAAATGTTATAATTAATGGCGACGTCAAAAAAAGCCAAAGTAAGCTGACGGTAGTTGTGTAAAGGTCAAGCTGTTGACATGAGAACATAAGATCCT]




>consensus_8215#1
ATGTAAAGCATGAGAACAAGTAACGAAACTACCAAGTCAAATACTGATTAGTCCCTTCGG
AGAAAGAACAATTTAATCGTAACCATCATTCTTACCAGTAATAGTTGTAAGGATTCATCG
TTGTTAGAAAATTATTATTTGTGGATAAAACAAAACAATACCAGATATTATTAGCGTAAC
ACAATGGTTTATAATCAGAAACAATTTACGATATTGTACTTTTTCACCAATTTCATGTAT
TAAATAGATATTCATGGAACAGAATAAAAGGGAAATAATCATAATGATATATAACTATGT
ATATTCTTACCTATATTATTGTATTGCATTTTCACTTTACAAATAAAAAATTATTTGCTG
TTTTGACCAATTTTATTCCTCTATCTCTTTCCCTCAAATAAACAAACATCCAATTAACAT
TGTTAACCAGCATAAACAGTTATAATATAAGGATAATATTAGTATTATTAATGATGAGAA
CTGAAAAAGATTATCAGAGATCTGTTGTATATGAGATTTGTAAAACAAAAAAAAATTATA
TCCAAACAAGAACAAACAAACTGAAAAGGCACATGGAAAACAAAAGGAGTATGATAACGA
TCCAAATGATCATAACCTCCTTCTTATATCTTTTTATACAGAATTGAAAAATACTATTTG
GTTAGCCATATTAATATTACCAAAAATGTTTGTAGAGATTAACTGGCATGCTGAAATTGA
AAAGAATATGTTCTGAAACGTAAAATTGTTATTGTATATAATAAAATTTTTAGACTAGAT
GATCCGTTCGAAAAAAAGTGGGAAGCAAATGTTATAATTAATGGCGACGTCAAAAAAAGC
CAAAGTAAGCTGACGGTAGTTGTGTAAAGGTCAAGCTGTTGACATGAGAACATAAGATCC
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8215#0      ------------------------------------------------------------
consensus_8215#1      ATGTAAAGCATGAGAACAAGTAACGAAACTACCAAGTCAAATACTGATTAGTCCCTTCGG 60
                                                                                  

consensus_8215#0      ------------------------------------------------------------
consensus_8215#1      AGAAAGAACAATTTAATCGTAACCATCATTCTTACCAGTAATAGTTGTAAGGATTCATCG 120
                                                                                  

consensus_8215#0      ------------------------------------------------------------
consensus_8215#1      TTGTTAGAAAATTATTATTTGTGGATAAAACAAAACAATACCAGATATTATTAGCGTAAC 180
                                                                                  

consensus_8215#0      ------------------------------------------------------------
consensus_8215#1      ACAATGGTTTATAATCAGAAACAATTTACGATATTGTACTTTTTCACCAATTTCATGTAT 240
                                                                                  

consensus_8215#0      ------------------------------------------------------------
consensus_8215#1      TAAATAGATATTCATGGAACAGAATAAAAGGGAAATAATCATAATGATATATAACTATGT 300
                                                                                  

consensus_8215#0      ----------------------------------------------AAACTTTTTTGCTG 14
consensus_8215#1      ATATTCTTACCTATATTATTGTATTGCATTTTCACTTTACAAATAAAAAATTATTTGCTG 360
                                                                    *** ** *******

consensus_8215#0      GTTTGACCAATTTTATTCCTTT-TCTCTTTCCCTCAAATAAACAAACATCCAATTAACAT 73
consensus_8215#1      TTTTGACCAATTTTATTCCTCTATCTCTTTCCCTCAAATAAACAAACATCCAATTAACAT 420
                       ******************* * *************************************

consensus_8215#0      TGTTAACCAGCATAAACAGTTATAATATAAGGATAATATTAGTATTATTAATGATGAGAA 133
consensus_8215#1      TGTTAACCAGCATAAACAGTTATAATATAAGGATAATATTAGTATTATTAATGATGAGAA 480
                      ************************************************************

consensus_8215#0      CTGAAAAAGATTATCAGAGATCTGTTGTATATGAGATTTGTAAAACAAAAAAAAATTATA 193
consensus_8215#1      CTGAAAAAGATTATCAGAGATCTGTTGTATATGAGATTTGTAAAACAAAAAAAAATTATA 540
                      ************************************************************

consensus_8215#0      TTCAAACAAGAACAAACAAACTGAAAAGGCACATGGAAAACAAAAGGAGTATGATAACGA 253
consensus_8215#1      TCCAAACAAGAACAAACAAACTGAAAAGGCACATGGAAAACAAAAGGAGTATGATAACGA 600
                      * **********************************************************

consensus_8215#0      TCCAAATGATCATAACCTCCTTCTTATATCTTTTTATACAGAATTGAAAAATACTATTTG 313
consensus_8215#1      TCCAAATGATCATAACCTCCTTCTTATATCTTTTTATACAGAATTGAAAAATACTATTTG 660
                      ************************************************************

consensus_8215#0      GTTAGCAATATTAATATTACCAAAAATGTTTGTAGAGATTAACTGGCATGCTGAAATTGA 373
consensus_8215#1      GTTAGCCATATTAATATTACCAAAAATGTTTGTAGAGATTAACTGGCATGCTGAAATTGA 720
                      ****** *****************************************************

consensus_8215#0      AAAGAATATGTTCTGAAACGTAAAATTGTTATTGTATATAATAAAATTTTTAGACTAGAT 433
consensus_8215#1      AAAGAATATGTTCTGAAACGTAAAATTGTTATTGTATATAATAAAATTTTTAGACTAGAT 780
                      ************************************************************

consensus_8215#0      GATCCGTTCGAAAAAAAGTGGGAAGCAAATGTTATAATTAATGGCGACGACAAAAAA-GC 492
consensus_8215#1      GATCCGTTCGAAAAAAAGTGGGAAGCAAATGTTATAATTAATGGCGACGTCAAAAAAAGC 840
                      ************************************************* ******* **

consensus_8215#0      CAAAGTAAGCTGACGGTAGTTCTTT----GTCCCTGTTTTGTCGTGGGGTTTGTGTGTTC 548
consensus_8215#1      CAAAGTAAGCTGACGGTAGTTGTGTAAAGGTCAAGCTGTTGACATGAGAAC-ATAAGATC 899
                      ********************* * *    ***    * *** * ** *     *  * **

consensus_8215#0      TTCGTAGTCAATAAATAAAAACTTCTGCCGCGAGCATTATTCTTTATGGTAACCATTACG 608
consensus_8215#1      CT---------------------------------------------------------- 901
                       *                                                          

consensus_8215#0      AAGTGCTTGTTCAAAATTTCTTTTGGATGGTGGTACTAAATGGGCAGGAAGTGTAGGTGG 668
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      TAGTTCGTAGCCTTCTAGTTTTAATTTCATTATATAACAGACTAAAGCGAATTCATCAGC 728
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      ATCAAGACAACCATCACGATCAATATCACCTAGAATCCAAATATTTTTCAACGCACTATA 788
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      AGGCAAATTGGATTTGACCATATGACTACGTGAAGCTTCACCGCTGATTTTACCATCCAT 848
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      AGGATTTAGTTTCAGAAACTCTTTATCCCATGGTTCTCTAAAACGATCAACAATCCATTC 908
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      CTTTTCAAAGCGACCCTCTTCAAATCCTTCACCAGCATGAAAACTGAAAGGTGTACCAGA 968
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      GGTATCGAATGCACCGCCTGTAACAGCTGGACCATGTGTTTCTACGATTGCATCACGTTC 1028
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      CATTGGAATCATTTGTACTAATTTTGCTACTTCACTCGATAGCATTTCATCGACAGCTTT 1088
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      GATTAGTTTTGGTTGTAGTGCAGGAAATGTTCTAAAATCATGTACTTCTAAAGACTCTTG 1148
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      CATTCTGTTAATGTTAGGGAAATCACCAATTGATATATGTTGTGTACGTGATATGGTATC 1208
consensus_8215#1      ------------------------------------------------------------
                                                                                  

consensus_8215#0      GTATACTTTGGCCCTCGTGCCGAAATTNCTT 1239
consensus_8215#1      -------------------------------