These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1036 fasta sequence [AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATTAAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAGAAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA-CAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTTATAAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATACACTTCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATTTTATAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGATATGGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCATTGTCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTGACTGGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTTGAAAAAATATGTAGAATAT] [-] EMBL CD142461 [AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATTAAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAGAAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATAT ] [+] EMBL CD164211 [ atATATAACAGTATTGTGGGATTACACAGAATATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAATGCAATTATTATAGGACCTGAATATAAATGCAAAAGAACCAGTCAAT CTGGTAACCATCGTGCATTATGATCACCTTCA ] [-] EMBL CD197545 [ TTGTGGGATTACACAGAAAATGTAATGACATGGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAGCCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA CAGTCAATCCTGGTAACCA ] [-] EMBL CD183109 [ GAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA CAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTT ] [+] EMBL CD178390 [ ACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA CAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTTATAAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATACACTTCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATTTTATAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGATATGGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCATTGTCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTGACTGGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTTGAAAAAATATGTAGAATAT] consensusID : consensus_8216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAACTAACATGAAAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTTTGACTCATCAAAAAGCCTAGATATGTCATATTACTGAAAATATACTCCTACTAGTTACATAAATAAAACCACATGAAATTAGATCATCAAAAGTACTAGCCAATAACTTACCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCA] [-] EMBL CD197614 [ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAACTAACATGAAAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTTTGACTCATCAAAAAGCCTAGATATGTCATATTACTGAAAATATACTCCTACTAGTTACATAAATAAAACCACATGAAATTAGATCATCAAAAGTACTAGCCAATAACTTACCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8216#0 AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATT 60 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 AAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAG 120 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 AAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATT--TATGTATATTGAAA 178 consensus_8216#1 --------ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAAC 52 ** * * ** ** * * * * *** * ** ** * ** ** ** consensus_8216#0 TGACTTTTTAAGATTTTACA-AATTCTATTATGTAAACAATATACAACCAAAAAACGAAT 237 consensus_8216#1 TAACATGAAAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTT 112 * ** * * * ** * * * * * *** * * * * * consensus_8216#0 CAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGC 297 consensus_8216#1 TGACTCA--TCAAAAAGCCTAGATATGT---CATATTACTGAAAATA-TACTCCTACTAG 166 * * ** * *** * *** ** * ** * ******** ** * * consensus_8216#0 AAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAA 357 consensus_8216#1 TTACATAAATAAAACCACATGAAATTAGATCATCAAA--AGTACTAGCCA-ATAACTTA- 222 * ** * **** * * *** *** ** ** * *** ** consensus_8216#0 GGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAA 417 consensus_8216#1 --CCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAA 280 ********************************************************* consensus_8216#0 TCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAAC 477 consensus_8216#1 TCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAAC 340 ************************************************************ consensus_8216#0 ATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGG 537 consensus_8216#1 ATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGG 400 ************************************************************ consensus_8216#0 ACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCATCGTGTATTATGATCACC 597 consensus_8216#1 ACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCA------------------ 442 ****************************************** consensus_8216#0 TTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGT 657 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 TATAAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATAC 717 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 ACTTCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATT 777 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 TTATAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGA 837 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 TATGGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCA 897 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 TTGTCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTG 957 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 ACTGGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTT 1017 consensus_8216#1 ------------------------------------------------------------ consensus_8216#0 GAAAAAATATGTAGAATAT 1036 consensus_8216#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||