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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1036 fasta sequence
[AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATTAAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAGAAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA-CAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTTATAAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATACACTTCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATTTTATAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGATATGGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCATTGTCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTGACTGGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTTGAAAAAATATGTAGAATAT]
[-] EMBL CD142461 [AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATTAAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAGAAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATAT ]
[+] EMBL CD164211 [ atATATAACAGTATTGTGGGATTACACAGAATATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAATGCAATTATTATAGGACCTGAATATAAATGCAAAAGAACCAGTCAAT CTGGTAACCATCGTGCATTATGATCACCTTCA ]
[-] EMBL CD197545 [ TTGTGGGATTACACAGAAAATGTAATGACATGGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAGCCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA CAGTCAATCCTGGTAACCA ]
[-] EMBL CD183109 [ GAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA CAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTT ]
[+] EMBL CD178390 [ ACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA CAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTTATAAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATACACTTCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATTTTATAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGATATGGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCATTGTCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTGACTGGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTTGAAAAAATATGTAGAATAT]
consensusID : consensus_8216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAACTAACATGAAAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTTTGACTCATCAAAAAGCCTAGATATGTCATATTACTGAAAATATACTCCTACTAGTTACATAAATAAAACCACATGAAATTAGATCATCAAAAGTACTAGCCAATAACTTACCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCA]
[-] EMBL CD197614 [ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAACTAACATGAAAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTTTGACTCATCAAAAAGCCTAGATATGTCATATTACTGAAAATATACTCCTACTAGTTACATAAATAAAACCACATGAAATTAGATCATCAAAAGTACTAGCCAATAACTTACCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8216#0 AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATT 60
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 AAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAG 120
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 AAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATT--TATGTATATTGAAA 178
consensus_8216#1 --------ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAAC 52
** * * ** ** * * * * *** * ** ** * ** ** **
consensus_8216#0 TGACTTTTTAAGATTTTACA-AATTCTATTATGTAAACAATATACAACCAAAAAACGAAT 237
consensus_8216#1 TAACATGAAAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTT 112
* ** * * * ** * * * * * *** * * * * *
consensus_8216#0 CAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGC 297
consensus_8216#1 TGACTCA--TCAAAAAGCCTAGATATGT---CATATTACTGAAAATA-TACTCCTACTAG 166
* * ** * *** * *** ** * ** * ******** ** * *
consensus_8216#0 AAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAA 357
consensus_8216#1 TTACATAAATAAAACCACATGAAATTAGATCATCAAA--AGTACTAGCCA-ATAACTTA- 222
* ** * **** * * *** *** ** ** * *** **
consensus_8216#0 GGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAA 417
consensus_8216#1 --CCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAA 280
*********************************************************
consensus_8216#0 TCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAAC 477
consensus_8216#1 TCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAAC 340
************************************************************
consensus_8216#0 ATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGG 537
consensus_8216#1 ATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGG 400
************************************************************
consensus_8216#0 ACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCATCGTGTATTATGATCACC 597
consensus_8216#1 ACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCA------------------ 442
******************************************
consensus_8216#0 TTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGT 657
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 TATAAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATAC 717
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 ACTTCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATT 777
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 TTATAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGA 837
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 TATGGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCA 897
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 TTGTCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTG 957
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 ACTGGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTT 1017
consensus_8216#1 ------------------------------------------------------------
consensus_8216#0 GAAAAAATATGTAGAATAT 1036
consensus_8216#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||