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Schistosoma mansoni
cluster # 8216 cluster # 8216       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8216#0 length = 1036 sequences # 5  
consensus_8216#1 length = 442 sequences # 1  

consensusID : consensus_8216#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1036
fasta sequence
                              [AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATTAAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAGAAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA-CAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTTATAAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATACACTTCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATTTTATAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGATATGGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCATTGTCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTGACTGGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTTGAAAAAATATGTAGAATAT]

[-] EMBL CD142461             [AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATTAAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAGAAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD164211             [                                                                                           atATATAACAGTATTGTGGGATTACACAGAATATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAATGCAATTATTATAGGACCTGAATATAAATGCAAAAGAACCAGTCAAT CTGGTAACCATCGTGCATTATGATCACCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD197545             [                                                                                                        TTGTGGGATTACACAGAAAATGTAATGACATGGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATGACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAGCCAAAAAACGAATCAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA CAGTCAATCCTGGTAACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD183109             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA CAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTT                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD178390             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAA CAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTTATAAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATACACTTCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATTTTATAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGATATGGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCATTGTCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTGACTGGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTTGAAAAAATATGTAGAATAT]


>consensus_8216#0 AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATT AAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAG AAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATTTATGTATATTGAAATG ACTTTTTAAGATTTTACAAATTCTATTATGTAAACAATATACAACCAAAAAACGAATCAA TGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGCAAA TATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAAGGT CAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCT GTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATA CTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACC TGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCATCGTGTATTATGATCACCTTC ATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGTTAT AAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATACACT TCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATTTTA TAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGATAT GGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCATTG TCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTGACT GGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTTGAA AAAATATGTAGAATAT



consensusID : consensus_8216#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence
                              [ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAACTAACATGAAAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTTTGACTCATCAAAAAGCCTAGATATGTCATATTACTGAAAATATACTCCTACTAGTTACATAAATAAAACCACATGAAATTAGATCATCAAAAGTACTAGCCAATAACTTACCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCA]

[-] EMBL CD197614             [ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAACTAACATGAAAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTTTGACTCATCAAAAAGCCTAGATATGTCATATTACTGAAAATATACTCCTACTAGTTACATAAATAAAACCACATGAAATTAGATCATCAAAAGTACTAGCCAATAACTTACCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCA]


>consensus_8216#1 ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAACTAACATGA AAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTTTGACTCAT CAAAAAGCCTAGATATGTCATATTACTGAAAATATACTCCTACTAGTTACATAAATAAAA CCACATGAAATTAGATCATCAAAAGTACTAGCCAATAACTTACCAACACACTTTTACTAA TAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAATCTGTAAAAACTAGTGTTTC GGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAACATACTGAAGGCGTGAAGACA AAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGGACCTGAATATAAATGCAAAA GAACAGTCAATCCTGGTAACCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8216#0      AATAGTTTAAGTTACTTACCNATCATATAATAGGAAATATACCCATAGTACTGGTCCATT 60
consensus_8216#1      ------------------------------------------------------------
                                                                                  

consensus_8216#0      AAATGGATCTCAAAAGGTACCATTCTATTCGGGATATAACAGTATTGTGGGATTACACAG 120
consensus_8216#1      ------------------------------------------------------------
                                                                                  

consensus_8216#0      AAAATGTAATGACATTGACAAAAAGGAATATACTTATACACATT--TATGTATATTGAAA 178
consensus_8216#1      --------ATCATGTCAACTTCTGGGTCTTTCCCTGTACCCCTTGCTAGGAATTTTCAAC 52
                              ** *  *  **     **  * * * * *** * **  ** * ** ** ** 

consensus_8216#0      TGACTTTTTAAGATTTTACA-AATTCTATTATGTAAACAATATACAACCAAAAAACGAAT 237
consensus_8216#1      TAACATGAAAGTTACATTCATGAGTAAGCTCCATTACTGATAGATATTTTAGTCTTGTTT 112
                      * ** *   *      * **  * *    *   * *   *** * *    *     *  *

consensus_8216#0      CAATGGAAGACATACAGCTGATATAAGTAGACTTAACATTGAAAATAATAAATGTGGTGC 297
consensus_8216#1      TGACTCA--TCAAAAAGCCTAGATATGT---CATATTACTGAAAATA-TACTCCTACTAG 166
                        *   *   ** * ***  * *** **   * **  * ******** **    *  *  

consensus_8216#0      AAATATTTTCCATACCATTAAATGACGACGTAATAAACCAGTGCTTAACATACAACCTAA 357
consensus_8216#1      TTACATAAATAAAACCACATGAAATTAGATCATCAAA--AGTACTAGCCA-ATAACTTA- 222
                        * **     * ****    *         *  ***  *** **   ** * *** ** 

consensus_8216#0      GGTCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAA 417
consensus_8216#1      --CCAACACACTTTTACTAATAATAAATCTCCAAATGAATAAATCCAAAGCATCAACAAA 280
                         *********************************************************

consensus_8216#0      TCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAAC 477
consensus_8216#1      TCTGTAAAAACTAGTGTTTCGGCTTTTGTTAGAATGCGAATGGATCACCGTCCCATGAAC 340
                      ************************************************************

consensus_8216#0      ATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGG 537
consensus_8216#1      ATACTGAAGGCGTGAAGACAAAATAATAATTGTTGGTAAACTGAAAGCAATTATTATAGG 400
                      ************************************************************

consensus_8216#0      ACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCATCGTGTATTATGATCACC 597
consensus_8216#1      ACCTGAATATAAATGCAAAAGAACAGTCAATCCTGGTAACCA------------------ 442
                      ******************************************                  

consensus_8216#0      TTCATATGCAGCATAAGCAGCATCCCATGGAATTCCAGATAATGTTGGTTGATGACCAGT 657
consensus_8216#1      ------------------------------------------------------------
                                                                                  

consensus_8216#0      TATAAAAAAAAGATAAGTTATCTAATAAGCAAAGAAATATTGCCAGAATCCATGAGATAC 717
consensus_8216#1      ------------------------------------------------------------
                                                                                  

consensus_8216#0      ACTTCTGAGGTACATGAAGCAGTAGTGAATTTTTATTACATTTATCCATATGATTACATT 777
consensus_8216#1      ------------------------------------------------------------
                                                                                  

consensus_8216#0      TTATAGCAGTCACATGTATACGCAATTGAATGAATATAATAATGAAAACCAACCAAATGA 837
consensus_8216#1      ------------------------------------------------------------
                                                                                  

consensus_8216#0      TATGGAATTCATTTAAGAAGACAAGTAGAGAAAGGAATGGTAAGACCATGAAACAGGTCA 897
consensus_8216#1      ------------------------------------------------------------
                                                                                  

consensus_8216#0      TTGTCCACAAAGTATACAAATAAACAATAGTTCTTTGAGTAGACTGACTACAATCATTTG 957
consensus_8216#1      ------------------------------------------------------------
                                                                                  

consensus_8216#0      ACTGGATACATTTTATAAAATTTATCTCTTCAATAAGATGAAATGGGGATTTCACGAGTT 1017
consensus_8216#1      ------------------------------------------------------------
                                                                                  

consensus_8216#0      GAAAAAATATGTAGAATAT 1036
consensus_8216#1      -------------------
                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)