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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence
[CTCGAGGCCAAAAATTCGGCACGAGGAATAAGACCGAGTTGCTTATCGTGCCGTCATACATAAGTGTATATTTAAA-TGA-CGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTC-AAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATTGCACACATTCTTCTGAATAATCGGTTNTCGCATTACAACACTTGATAATGATAGTACTATAGTCGACATATTNTATTTGTATAATTNTGTCATTATTTAATACTGGTATATATT]
[+] EMBL CD080111 [CTCGAGGCCAAAAATTCGGCACGAGGAATAAGACCGAGTTGCTTATCGTGCCGTCATACATAAGTGTATATTTAAA TGA CGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTC AAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATTGCACACATTCTTCTGAATAATCGGTTNTCGCATTACAACACTTGATAATGATAGTACTATAGTCGACATATTNTATTTGTATAATTNTGTCATTATTTAATACTGGTATATATT]
[+] EMBL CD126570 [ TCGTGCCGTCATACATAAGTGTATATTTAAA TGA CGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAG ]
[+] EMBL CD063725 [ tcgGTGCCGTCATACATAAGTGTATATTTAAAGTGAGCGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATTAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTC AAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATA ]
consensusID : consensus_8217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence
[TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTTATCGCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGATTAGCAGTGGTCTAAATGGCGATCAAAACCGTCCAAAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATGCACACATTCTTCTGAATAATCCGT]
[+] EMBL CD145653 [TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTTATCGCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGATTAGCAGTGGTCTAAATGGCGATCAAAACCGTCCAAAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATGCACACATTCTTCTGAATAATCCGT]
[+] EMBL CD119519 [ TATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCA ]
consensusID : consensus_8217#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence
[GACCGAGTTGCTTATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGAATTAGCAAGGTGGTCTAATGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAAATTCAAATGTGTTAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA]
[+] EMBL AW330543 [GACCGAGTTGCTTATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGAATTAGCAAGGTGGTCTAATGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAAATTCAAATGTGTTAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8217#0 --------------CTCGAGGCCAAAAATTCGGCACGAGGA--ATAAGACCGAGTTGCTT 44
consensus_8217#1 TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTT 60
consensus_8217#2 -----------------------------------------------GACCGAGTTGCTT 13
************
consensus_8217#0 ATC-GTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGA-TTAGCA--GTG 100
consensus_8217#1 ATC-GCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGA-TTAGCA--GTG 116
consensus_8217#2 ATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGAATTAGCAAGGTG 73
*** * **** ****************************** * **** ****** ***
consensus_8217#0 GTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTAT-GAGGAACAAATACAA-TGTGT 158
consensus_8217#1 GTCTAAATGGCGATCAAAACCGTCCAAAAAGTACTTAT-GAGGAACAAATACAA-TGTGT 174
consensus_8217#2 GTCTAA-TGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAAATTCAAATGTGT 132
****** ********* ********* *********** *********** *** *****
consensus_8217#0 -AGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCG 217
consensus_8217#1 -AGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCG 233
consensus_8217#2 TAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA--------------------------- 165
************* * *** **** ****
consensus_8217#0 CTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCA 277
consensus_8217#1 CTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCA 293
consensus_8217#2 ------------------------------------------------------------
consensus_8217#0 TAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATC 337
consensus_8217#1 TAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATC 353
consensus_8217#2 ------------------------------------------------------------
consensus_8217#0 TGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGT 397
consensus_8217#1 TGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGT 413
consensus_8217#2 ------------------------------------------------------------
consensus_8217#0 CAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAA 457
consensus_8217#1 CAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAA 473
consensus_8217#2 ------------------------------------------------------------
consensus_8217#0 CACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACT-GCGGTCGATGCATTA 516
consensus_8217#1 CACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTA 533
consensus_8217#2 ------------------------------------------------------------
consensus_8217#0 CCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTA 576
consensus_8217#1 CCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTA 593
consensus_8217#2 ------------------------------------------------------------
consensus_8217#0 TTGCACACATTCTTCTGAATAATCGGTTNTCGCATTACAACACTTGATAATGATAGTACT 636
consensus_8217#1 T-GCACACATTCTTCTGAATAATCCGT--------------------------------- 619
consensus_8217#2 ------------------------------------------------------------
consensus_8217#0 ATAGTCGACATATTNTATTTGTATAATTNTGTCATTATTTAATACTGGTATATATT 692
consensus_8217#1 --------------------------------------------------------
consensus_8217#2 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||