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Schistosoma mansoni
cluster # 8217 cluster # 8217       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8217#0 length = 692 sequences # 3  
consensus_8217#1 length = 619 sequences # 2  
consensus_8217#2 length = 165 sequences # 1  

consensusID : consensus_8217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 692
fasta sequence
                              [CTCGAGGCCAAAAATTCGGCACGAGGAATAAGACCGAGTTGCTTATCGTGCCGTCATACATAAGTGTATATTTAAA-TGA-CGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTC-AAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATTGCACACATTCTTCTGAATAATCGGTTNTCGCATTACAACACTTGATAATGATAGTACTATAGTCGACATATTNTATTTGTATAATTNTGTCATTATTTAATACTGGTATATATT]

[+] EMBL CD080111             [CTCGAGGCCAAAAATTCGGCACGAGGAATAAGACCGAGTTGCTTATCGTGCCGTCATACATAAGTGTATATTTAAA TGA CGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTC AAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATTGCACACATTCTTCTGAATAATCGGTTNTCGCATTACAACACTTGATAATGATAGTACTATAGTCGACATATTNTATTTGTATAATTNTGTCATTATTTAATACTGGTATATATT]
[+] EMBL CD126570             [                                             TCGTGCCGTCATACATAAGTGTATATTTAAA TGA CGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAG                                                                                                                                                                                                        ]
[+] EMBL CD063725             [                                            tcgGTGCCGTCATACATAAGTGTATATTTAAAGTGAGCGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATTAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTC AAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATA                                                                                                                                                                                                                                            ]


>consensus_8217#0 CTCGAGGCCAAAAATTCGGCACGAGGAATAAGACCGAGTTGCTTATCGTGCCGTCATACA TAAGTGTATATTTAAATGACGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAAC CGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATG GCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAG AAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGT ATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTG TGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGT GTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGAT TTGTATGACAAGTGTTACACTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGT AATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATTGCACACATTCTTCTGAATAATC GGTTNTCGCATTACAACACTTGATAATGATAGTACTATAGTCGACATATTNTATTTGTAT AATTNTGTCATTATTTAATACTGGTATATATT



consensusID : consensus_8217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence
                              [TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTTATCGCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGATTAGCAGTGGTCTAAATGGCGATCAAAACCGTCCAAAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATGCACACATTCTTCTGAATAATCCGT]

[+] EMBL CD145653             [TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTTATCGCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGATTAGCAGTGGTCTAAATGGCGATCAAAACCGTCCAAAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATGCACACATTCTTCTGAATAATCCGT]
[+] EMBL CD119519             [                                                                                                                                                       TATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCA                                                                                                                                                                                                                                                                                                        ]


>consensus_8217#1 TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTT ATCGCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGATTAGCAGTGGTCT AAATGGCGATCAAAACCGTCCAAAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGT GTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAA AGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAA GAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATC TCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTT TGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGA CGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTACCTCTTC CTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATGCACAC ATTCTTCTGAATAATCCGT



consensusID : consensus_8217#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 165
fasta sequence
                              [GACCGAGTTGCTTATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGAATTAGCAAGGTGGTCTAATGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAAATTCAAATGTGTTAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA]

[+] EMBL AW330543             [GACCGAGTTGCTTATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGAATTAGCAAGGTGGTCTAATGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAAATTCAAATGTGTTAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA]


>consensus_8217#2 GACCGAGTTGCTTATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAG AATTAGCAAGGTGGTCTAATGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAA ATTCAAATGTGTTAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8217#0      --------------CTCGAGGCCAAAAATTCGGCACGAGGA--ATAAGACCGAGTTGCTT 44
consensus_8217#1      TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTT 60
consensus_8217#2      -----------------------------------------------GACCGAGTTGCTT 13
                                                                      ************

consensus_8217#0      ATC-GTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGA-TTAGCA--GTG 100
consensus_8217#1      ATC-GCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGA-TTAGCA--GTG 116
consensus_8217#2      ATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGAATTAGCAAGGTG 73
                      *** * **** ****************************** * **** ******  ***

consensus_8217#0      GTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTAT-GAGGAACAAATACAA-TGTGT 158
consensus_8217#1      GTCTAAATGGCGATCAAAACCGTCCAAAAAGTACTTAT-GAGGAACAAATACAA-TGTGT 174
consensus_8217#2      GTCTAA-TGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAAATTCAAATGTGT 132
                      ****** ********* ********* *********** *********** *** *****

consensus_8217#0      -AGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCG 217
consensus_8217#1      -AGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCG 233
consensus_8217#2      TAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA--------------------------- 165
                       *************   * *** ****  ****                           

consensus_8217#0      CTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCA 277
consensus_8217#1      CTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCA 293
consensus_8217#2      ------------------------------------------------------------
                                                                                  

consensus_8217#0      TAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATC 337
consensus_8217#1      TAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATC 353
consensus_8217#2      ------------------------------------------------------------
                                                                                  

consensus_8217#0      TGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGT 397
consensus_8217#1      TGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGT 413
consensus_8217#2      ------------------------------------------------------------
                                                                                  

consensus_8217#0      CAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAA 457
consensus_8217#1      CAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAA 473
consensus_8217#2      ------------------------------------------------------------
                                                                                  

consensus_8217#0      CACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACT-GCGGTCGATGCATTA 516
consensus_8217#1      CACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTA 533
consensus_8217#2      ------------------------------------------------------------
                                                                                  

consensus_8217#0      CCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTA 576
consensus_8217#1      CCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTA 593
consensus_8217#2      ------------------------------------------------------------
                                                                                  

consensus_8217#0      TTGCACACATTCTTCTGAATAATCGGTTNTCGCATTACAACACTTGATAATGATAGTACT 636
consensus_8217#1      T-GCACACATTCTTCTGAATAATCCGT--------------------------------- 619
consensus_8217#2      ------------------------------------------------------------
                                                                                  

consensus_8217#0      ATAGTCGACATATTNTATTTGTATAATTNTGTCATTATTTAATACTGGTATATATT 692
consensus_8217#1      --------------------------------------------------------
consensus_8217#2      --------------------------------------------------------
                                                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)