These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence [CTCGAGGCCAAAAATTCGGCACGAGGAATAAGACCGAGTTGCTTATCGTGCCGTCATACATAAGTGTATATTTAAA-TGA-CGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTC-AAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATTGCACACATTCTTCTGAATAATCGGTTNTCGCATTACAACACTTGATAATGATAGTACTATAGTCGACATATTNTATTTGTATAATTNTGTCATTATTTAATACTGGTATATATT] [+] EMBL CD080111 [CTCGAGGCCAAAAATTCGGCACGAGGAATAAGACCGAGTTGCTTATCGTGCCGTCATACATAAGTGTATATTTAAA TGA CGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTC AAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATTGCACACATTCTTCTGAATAATCGGTTNTCGCATTACAACACTTGATAATGATAGTACTATAGTCGACATATTNTATTTGTATAATTNTGTCATTATTTAATACTGGTATATATT] [+] EMBL CD126570 [ TCGTGCCGTCATACATAAGTGTATATTTAAA TGA CGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAG ] [+] EMBL CD063725 [ tcgGTGCCGTCATACATAAGTGTATATTTAAAGTGAGCGGAAATTGAGATTAGCAGTGGTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTATTAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTC AAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATA ] consensusID : consensus_8217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence [TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTTATCGCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGATTAGCAGTGGTCTAAATGGCGATCAAAACCGTCCAAAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATGCACACATTCTTCTGAATAATCCGT] [+] EMBL CD145653 [TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTTATCGCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGATTAGCAGTGGTCTAAATGGCGATCAAAACCGTCCAAAAAGTACTTATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATCTGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGTCAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAACACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTACCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTATGCACACATTCTTCTGAATAATCCGT] [+] EMBL CD119519 [ TATGAGGAACAAATACAATGTGTAGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCGCTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCATAGAAAAGAAGAGTGTATCCGGTATCGTCA ] consensusID : consensus_8217#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence [GACCGAGTTGCTTATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGAATTAGCAAGGTGGTCTAATGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAAATTCAAATGTGTTAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA] [+] EMBL AW330543 [GACCGAGTTGCTTATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGAATTAGCAAGGTGGTCTAATGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAAATTCAAATGTGTTAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8217#0 --------------CTCGAGGCCAAAAATTCGGCACGAGGA--ATAAGACCGAGTTGCTT 44 consensus_8217#1 TTTGACCTACTTAGCGCAATAGTGGACTCCTAGCGTGTACACAATAAAACCGAGTTGCTT 60 consensus_8217#2 -----------------------------------------------GACCGAGTTGCTT 13 ************ consensus_8217#0 ATC-GTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGA-TTAGCA--GTG 100 consensus_8217#1 ATC-GCGCCGACATACATAAGTGTATATTTAAATGACGGAATTGGAGA-TTAGCA--GTG 116 consensus_8217#2 ATCCGTGCCGTCATACATAAGTGTATATTTAAATGACGGAAATTGAGAATTAGCAAGGTG 73 *** * **** ****************************** * **** ****** *** consensus_8217#0 GTCTAAATGGCGATCAGAACCGTCCAGAAAGTACTTAT-GAGGAACAAATACAA-TGTGT 158 consensus_8217#1 GTCTAAATGGCGATCAAAACCGTCCAAAAAGTACTTAT-GAGGAACAAATACAA-TGTGT 174 consensus_8217#2 GTCTAA-TGGCGATCAGAACCGTCCAGAAAGTACTTATTGAGGAACAAATTCAAATGTGT 132 ****** ********* ********* *********** *********** *** ***** consensus_8217#0 -AGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCG 217 consensus_8217#1 -AGGTGTGTTCGCCCAGCCTATGGCTTCAAAAAAATTAACAAAGCGTTTGTATAAGCTCG 233 consensus_8217#2 TAGGTGTGTTCGCCAGCCATATTGCTTTCAAAA--------------------------- 165 ************* * *** **** **** consensus_8217#0 CTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCA 277 consensus_8217#1 CTCGAAAAGCTAAACGGGTAAAGAAAACAGATGTCGGAATCAAAGCAATCTTAAAAGCCA 293 consensus_8217#2 ------------------------------------------------------------ consensus_8217#0 TAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATC 337 consensus_8217#1 TAGAAAAGAAGAGTGTATCCGGTATCGTCATATTAGCCGGTGATATTAGCCCGTTTGATC 353 consensus_8217#2 ------------------------------------------------------------ consensus_8217#0 TGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGT 397 consensus_8217#1 TGATATCTCATGTGCCATTGGTGTGTGAGGAGCACGACATACCTTACTGCTATGTTCCGT 413 consensus_8217#2 ------------------------------------------------------------ consensus_8217#0 CAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAA 457 consensus_8217#1 CAAAGTTTGACCTCGGTGCATGTGTATCTTCAGTTACTCCCATACCTATTGTTTTCATAA 473 consensus_8217#2 ------------------------------------------------------------ consensus_8217#0 CACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACT-GCGGTCGATGCATTA 516 consensus_8217#1 CACGGGACGAACAGTATGGTGATTTGTATGACAAGTGTTACACTTGCGGTCGATGCATTA 533 consensus_8217#2 ------------------------------------------------------------ consensus_8217#0 CCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTA 576 consensus_8217#1 CCTCTTCCTTTATGAAATTCCTGTAATCAAAAGAGCAGAATTTTTTCAATAAACCTATTA 593 consensus_8217#2 ------------------------------------------------------------ consensus_8217#0 TTGCACACATTCTTCTGAATAATCGGTTNTCGCATTACAACACTTGATAATGATAGTACT 636 consensus_8217#1 T-GCACACATTCTTCTGAATAATCCGT--------------------------------- 619 consensus_8217#2 ------------------------------------------------------------ consensus_8217#0 ATAGTCGACATATTNTATTTGTATAATTNTGTCATTATTTAATACTGGTATATATT 692 consensus_8217#1 -------------------------------------------------------- consensus_8217#2 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||