cluster # 8231

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Schistosoma mansoni
cluster # 8231 cluster # 8231 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8231#0 length = 977 sequences # 5

consensus_8231#1 length = 385 sequences # 1

consensusID : consensus_8231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 977
fasta sequence

                              [CACCCCCACCACCACAATCGACGGATAATAACAGTAGCAACTTGTCAACGGAACAAAATCAATCTATTAATGAAGAGATGAATAGTACTACATCACAAACAAAAGAAATCACTACAATGAATCCAATTAAAAATATTGAAAGTAGCGATACTCTAGTAGAATACTGTCCAAAATTTGGAATATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAAAAAAGGAACTCAATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGTAATTCATCAAATACACTAAACATTACTGAGATGAATTCATGTGATAATAATAATAATAACTCAATTGTAAGTGAATTAAATCGTATTGCAAACAGTGATTTAAAGCAATGGATTGTTAATGATAAGCCAGAACAGTATAATAGCAATGTTGGTTGTTATTCTGATCGAAGGCAACAACTGGATTCTGTTCATCCAGTAACTCAAAATTGTTTAACATCATCAGCACCTCAAACAAACTTTTCTGATATCGATATGGAAATTGATGGAAAGGGACGTGGTGGAGTAGGAGAACTAGATGAACCAGATACATTATCTAATCGTCCTATTCTTCTATCACCATCAATTGATATCAGTGATTGTAAATCTAAAGAATTCAATGAGAAAATATTTTTATCATCTAAAAAATCTACATTGTTAACACAAAAACCATTATCCACATATGCTCATTGGTTAATTTAATTCAATAGAATAGTATAGTCTCTTCGTGTCCATATGAATTTTTAACAGGAATTGTTTCTTTGCCAACTCTCTCTCTCTCTCTCTCGTTCTTTCTGTCTCCTTCTGTTCCATTGTGTATGGATAATAAATAGAGTCCTATTATGTGCTAATGCTTCTCACTCACTCACTCATTCACCCATACTCATGTTGATCCCTAAAACTATGCTTGATTTTCTTTGA]

[+] EMBL CD185424             [CACCCCCACCACCACAATCGACGGATAATAACAGTAGCAACTTGTCAACGGAACAAAATCAATCTATTAATGAAGAGATGAATAGTACTACATCACAAACAAAAGAAATCACTACAATGAATCCAATTAAAAATATTGAAAGTAGCGATACTCTAGTAGAATACTGTCCAAAATTTGGAATATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAAAAAAGGAACTCAATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGTAATTCATCAAATACACTAAACATTGCTGAGATGAATTCATGTGATAATAATAATAATAACTCAATTGTAAGTGAATTAAATCGTATTGCAAACAGTGATTTAAAGCAATGGATTGTTAATGATAAGCCAGAACAGTATTATAGCAATGTTGGTTGTTATTCTGATCGAAGGCAACAACTGGATTCTGTTCATCCAGTAACTCAAAATTGTTTAACATCATCAGCACCTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD185570             [CACCCCCACCACCACAATCGACGGATAATAACAGTAGCAACTTGTCAACGGAACAAAATCAATCTATTAATGAAGAGATGAATAGTACTACATCACAAACAAAAGAAATCACTACAATGAATCCAATTAAAAATATTGAAAGTAGCGATACTCTAGTAGAATACTGTCCAAAATTTGGAATATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAAAAAAGGAACTCAATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGTAATTCATCAAATACACTAAACATTACTGAGATGAATTCATGTGATAATAATAATAATAACTCAATTGTAAGTGAATTAAATCGTATTGCAAACAGTGATTTAAAGTAATGGATTGTTAATGATAAGCCAGAACAGTATAATAGCAATGTTGGTTGTTATTCTGATCGAAGGCAACAACTGGATTCTGTTCATCCAGTAACTCAAAATTGTTTAACATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD185353             [CACCCCCACCACCACAATCGACGGATAATAACAGTAGCAACTTGTCAACGGAACAAAATCAATCTATTAATGAAGAGATGAATAGTACTACATCACAAACAAATGAAATCACTACAATGAATCCAATTAAAAATATTGAAAGTAGCGATACTCTAGTAGAATACTGTCCAAAATTTGGAATATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAAAAAAGGAACTCAATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGTAATTCATCAAATACACTAAACATTACTGAGATGAATTCATGTGATAATAATAATAATAACTCAATTGTAAGTGAATTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD191141             [   tCCCACCTCCACAATCGACGGATAATAACAGTAGCAACTTGTCAACGGAACAAAATCAATCTATTAATGAAGAGATGAATAGTACTACATCACAAACAAATGAAATCACTACAATGAATCCAATTAAAAATATTGAAAGTAGCGATACTCTAGTAGAATACTGTCCAAAATTTGGAATATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAAAAAAGGAACTCAATTGATGCGTCAATACAATCAATCACTAATGAAACTTCGGTAGTTGGTAATTCATCAAATACACTAAACATTACTGAGATGAATTCATGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BF936583             [                                                                                                                                                                                                                                                                                                                                                                        CAATTGTAAGTGAATTAAATCGTATTGCAAACAGTGATTTAAAGCAATGGATTGTTAATGATAAGCCAGAACAGTATAATAGCAATGTTGGTTGTTATTCTGATCGAAGGCAACAATTGGATTCTGTTCATCCAGTAACTCAAAATTGTTTAACATCATCAGCACCTCAAACAAACTTTTCTGATATCGATATGGAAATTGATGGAAAGGGACGTGGTGGAGTAGGAGAACTAGATGAACCAGATACATTATCTAATCGTCCTATTCTTCTATCACCATCAATTGATATCAGTGATTGTAAATCTAAAGAATTCAATGAGAAAATATTTTTATCATCTAAAAAATCTACATTGTTAACACAAAAACCATTATCCACATATGCTCATTGGTTAATTTAATTCAATAGAATAGTATAGTCTCTTCGTGTCCATATGAATTTTTAACAGGAATTGTTTCTTTGCCAACTCTCTCTCTCTCTCTCTCGTTCTTTCTGTCTCCTTCTGTTCCATTGTGTATGGATAATAAATAGAGTCCTATTATGTGCTAATGCTTCTCACTCACTCACTCATTCACCCATACTCATGTTGATCCCTAAAACTATGCTTGATTTTCTTTGA]




>consensus_8231#0
CACCCCCACCACCACAATCGACGGATAATAACAGTAGCAACTTGTCAACGGAACAAAATC
AATCTATTAATGAAGAGATGAATAGTACTACATCACAAACAAAAGAAATCACTACAATGA
ATCCAATTAAAAATATTGAAAGTAGCGATACTCTAGTAGAATACTGTCCAAAATTTGGAA
TATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAAA
AAAGGAACTCAATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGTA
ATTCATCAAATACACTAAACATTACTGAGATGAATTCATGTGATAATAATAATAATAACT
CAATTGTAAGTGAATTAAATCGTATTGCAAACAGTGATTTAAAGCAATGGATTGTTAATG
ATAAGCCAGAACAGTATAATAGCAATGTTGGTTGTTATTCTGATCGAAGGCAACAACTGG
ATTCTGTTCATCCAGTAACTCAAAATTGTTTAACATCATCAGCACCTCAAACAAACTTTT
CTGATATCGATATGGAAATTGATGGAAAGGGACGTGGTGGAGTAGGAGAACTAGATGAAC
CAGATACATTATCTAATCGTCCTATTCTTCTATCACCATCAATTGATATCAGTGATTGTA
AATCTAAAGAATTCAATGAGAAAATATTTTTATCATCTAAAAAATCTACATTGTTAACAC
AAAAACCATTATCCACATATGCTCATTGGTTAATTTAATTCAATAGAATAGTATAGTCTC
TTCGTGTCCATATGAATTTTTAACAGGAATTGTTTCTTTGCCAACTCTCTCTCTCTCTCT
CTCGTTCTTTCTGTCTCCTTCTGTTCCATTGTGTATGGATAATAAATAGAGTCCTATTAT
GTGCTAATGCTTCTCACTCACTCACTCATTCACCCATACTCATGTTGATCCCTAAAACTA
TGCTTGATTTTCTTTGA

consensusID : consensus_8231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [AATATTGAAAGTAGCGATACTCTAGTTAGAATACTGTCCAAAATTTGGAATATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAAAAAAGGAACTCAATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGTAATTCATCAAATACACTAAACATTACTGAGATGAATTCATGTGATAATAATAATAACAACTCAATTGTAAGTGAATTAAATCGTATTGCAAACAGTGATTTAAAGCAATGGATTGTTAATGATAAGCCAGAACAGTATAATAGCAATGTCAATTAAAAATATTGAAAGTAGCGATACTCTAGTAGAATACTGTCCAAAATTTGGAATATGTCCAGG]

[+] EMBL CD069309             [AATATTGAAAGTAGCGATACTCTAGTTAGAATACTGTCCAAAATTTGGAATATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAAAAAAGGAACTCAATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGTAATTCATCAAATACACTAAACATTACTGAGATGAATTCATGTGATAATAATAATAACAACTCAATTGTAAGTGAATTAAATCGTATTGCAAACAGTGATTTAAAGCAATGGATTGTTAATGATAAGCCAGAACAGTATAATAGCAATGTCAATTAAAAATATTGAAAGTAGCGATACTCTAGTAGAATACTGTCCAAAATTTGGAATATGTCCAGG]




>consensus_8231#1
AATATTGAAAGTAGCGATACTCTAGTTAGAATACTGTCCAAAATTTGGAATATGTCAAGG
TGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAAAAAAGGAACTC
AATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGTAATTCATCAAA
TACACTAAACATTACTGAGATGAATTCATGTGATAATAATAATAACAACTCAATTGTAAG
TGAATTAAATCGTATTGCAAACAGTGATTTAAAGCAATGGATTGTTAATGATAAGCCAGA
ACAGTATAATAGCAATGTCAATTAAAAATATTGAAAGTAGCGATACTCTAGTAGAATACT
GTCCAAAATTTGGAATATGTCCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8231#0      CACCCCCACCACCACAATCGACGGATAATAACAGTAGCAACTTGTCAACGGAACAAAATC 60
consensus_8231#1      ------------------------------------------------------------
                                                                                  

consensus_8231#0      AATCTATTAATGAAGAGATGAATAGTACTACATCACAAACAAAAGAAATCACTACAATGA 120
consensus_8231#1      ------------------------------------------------------------
                                                                                  

consensus_8231#0      ATCCAATTAAAAATATTGAAAGTAGCGATACTCTAGT-AGAATACTGTCCAAAATTTGGA 179
consensus_8231#1      -----------AATATTGAAAGTAGCGATACTCTAGTTAGAATACTGTCCAAAATTTGGA 49
                                 ************************** **********************

consensus_8231#0      ATATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAA 239
consensus_8231#1      ATATGTCAAGGTGGTCCTGGTGGACCGACATGTTGTGGTGGATGTTCTTTATCAATGAAA 109
                      ************************************************************

consensus_8231#0      AAAAGGAACTCAATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGT 299
consensus_8231#1      AAAAGGAACTCAATTGATGCATCAATACAATCAATCACTAATGAAACTTCGGTAATTGGT 169
                      ************************************************************

consensus_8231#0      AATTCATCAAATACACTAAACATTACTGAGATGAATTCATGTGATAATAATAATAATAAC 359
consensus_8231#1      AATTCATCAAATACACTAAACATTACTGAGATGAATTCATGTGATAATAATAATAACAAC 229
                      ******************************************************** ***

consensus_8231#0      TCAATTGTAAGTGAATTAAATCGTATTGCAAACAGTGATTTAAAGCAATGGATTGTTAAT 419
consensus_8231#1      TCAATTGTAAGTGAATTAAATCGTATTGCAAACAGTGATTTAAAGCAATGGATTGTTAAT 289
                      ************************************************************

consensus_8231#0      GATAAGCCAGAACAGTATAATAGCAATGTTGGTTGTTATTCTGATCGAAGGCAACAACTG 479
consensus_8231#1      GATAAGCCAGAACAGTATAATAGCAATGTCAATTAAAAAT---ATTGAAAGTAGCGAT-- 344
                      *****************************   **   * *   ** *** * * * *   

consensus_8231#0      GATTCTGTTCATCCAGTAACTCAAAATTGTTTAACATCATCAGCACCTCAAACAAACTTT 539
consensus_8231#1      -ACTCTAGTAGAATACTGTCCAAAATTTG--GAATATGTCCAGG---------------- 385
                       * ***  *     * *  *  *** ***   ** **   ***                 

consensus_8231#0      TCTGATATCGATATGGAAATTGATGGAAAGGGACGTGGTGGAGTAGGAGAACTAGATGAA 599
consensus_8231#1      ------------------------------------------------------------
                                                                                  

consensus_8231#0      CCAGATACATTATCTAATCGTCCTATTCTTCTATCACCATCAATTGATATCAGTGATTGT 659
consensus_8231#1      ------------------------------------------------------------
                                                                                  

consensus_8231#0      AAATCTAAAGAATTCAATGAGAAAATATTTTTATCATCTAAAAAATCTACATTGTTAACA 719
consensus_8231#1      ------------------------------------------------------------
                                                                                  

consensus_8231#0      CAAAAACCATTATCCACATATGCTCATTGGTTAATTTAATTCAATAGAATAGTATAGTCT 779
consensus_8231#1      ------------------------------------------------------------
                                                                                  

consensus_8231#0      CTTCGTGTCCATATGAATTTTTAACAGGAATTGTTTCTTTGCCAACTCTCTCTCTCTCTC 839
consensus_8231#1      ------------------------------------------------------------
                                                                                  

consensus_8231#0      TCTCGTTCTTTCTGTCTCCTTCTGTTCCATTGTGTATGGATAATAAATAGAGTCCTATTA 899
consensus_8231#1      ------------------------------------------------------------
                                                                                  

consensus_8231#0      TGTGCTAATGCTTCTCACTCACTCACTCATTCACCCATACTCATGTTGATCCCTAAAACT 959
consensus_8231#1      ------------------------------------------------------------
                                                                                  

consensus_8231#0      ATGCTTGATTTTCTTTGA 977
consensus_8231#1      ------------------