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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 559 fasta sequence
[GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTTCCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAAGATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATAGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTTGGGAGACACCCTAGCCAAA]
[+] EMBL CD125016 [GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTTCCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAAGATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATAGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATCCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATA ]
[+] EMBL CD125023 [GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTTCCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAAGATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATAGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATCCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATA ]
[-] EMBL CD192611 [ TGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTTGGGAGACACCCTAGCCAAA]
[-] EMBL CD192634 [ TGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTTGGGAGACACCCTAGCCAAA]
[-] EMBL CD192804 [ TGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACG ]
consensusID : consensus_8235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATGTCACATACCTGATTTATACGGAAAACGTGACCTCAGCCAGAATTCTCAAACAAGTTCTAAAATAAATTCTCATAAATTTAACTTTGGGAACATCTTCGTGCAGCATCACATCATCGTCGTCCAAAACATCAAATAGAAACCAAAACAGCTATACATCGAATTGAACGGGCTTTAAAAAATCTGGAGAAAACACCAATCGGTGGTGTGGCCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGATATATTAATATTAAAATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGAATTCACTTTTCTACATCGTCGCCATCTGTATCTTGTTCTATGCGAAGAACTATTAGGAAAACACGCGATAATGATA]
[+] EMBL CD083894 [CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATGTCACATACCTGATTTATACGGAAAACGTGACCTCAGCCAGAATTCTCAAACAAGTTCTAAAATAAATTCTCATAAATTTAACTTTGGGAACATCTTCGTGCAGCATCACATCATCGTCGTCCAAAACATCAAATAGAAACCAAAACAGCTATACATCGAATTGAACGGGCTTTAAAAAATCTGGAGAAAACACCAATCGGTGGTGTGGCCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGATATATTAATATTAAAATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGAATTCACTTTTCTACATCGTCGCCATCTGTATCTTGTTCTATGCGAAGAACTATTAGGAAAACACGCGATAATGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8235#0 GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTT 60
consensus_8235#1 --------------CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATG 46
* **** * *** * *** * *
consensus_8235#0 CCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAA 120
consensus_8235#1 TCACATACCTGATTTATACGGAAAACGTGACCT----CAGCCAGAATTCTCAAACAAG-- 100
* *** * * *** * * * * * * *** *** ** * *
consensus_8235#0 GATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCA-AT 179
consensus_8235#1 -----TTCTAAAATAAA-------TTCTCATAAATT-TAACTTTGGGAACATCTTCGTGC 147
** * ** * * *** ***** * * * *****
consensus_8235#0 AGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTC 239
consensus_8235#1 AGCATCACATCATCGTCGTCCAAAACATCAAATAGAAACCAAA----ACAGCTATACATC 203
** ** ** * * * * ** ** ** * **** * * ** * * **
consensus_8235#0 ACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTG- 298
consensus_8235#1 GAATTGAACGG--------GCTTTAAAAAATCTGGAGAAAACACCA-ATCGGTGGTGTGG 254
*** * * * * ****** ** ** * ** * * ****
consensus_8235#0 CAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAA 358
consensus_8235#1 CCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGATATATTAATATTAA 314
* * * ** * * * ** * ** ** * *** ** **
consensus_8235#0 AATC--CAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGT 416
consensus_8235#1 AATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGA----ATTCACTTTTCTACATC- 369
**** * ** * * ** * * **** * * ** **** ** **
consensus_8235#0 CAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATG 476
consensus_8235#1 ---------GTCGCCATCTGTATCTTGTTCTATG-CGAAGAACTATTAGGAAAACACGCG 419
* **** ***** * ** ** ** ** * * * *
consensus_8235#0 GAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACG 536
consensus_8235#1 ATAAT--GATA------------------------------------------------- 428
*** ****
consensus_8235#0 TTTTGGGAGACACCCTAGCCAAA 559
consensus_8235#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||