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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8235 cluster # 8235       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8235#0 length = 559 sequences # 5  
consensus_8235#1 length = 428 sequences # 1  

consensusID : consensus_8235#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 559
fasta sequence
                              [GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTTCCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAAGATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATAGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTTGGGAGACACCCTAGCCAAA]

[+] EMBL CD125016             [GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTTCCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAAGATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATAGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATCCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATA                                                                                                             ]
[+] EMBL CD125023             [GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTTCCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAAGATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATAGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATCCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATA                                                                                                             ]
[-] EMBL CD192611             [                                                                                                                                                                                                                                                                                                      TGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTTGGGAGACACCCTAGCCAAA]
[-] EMBL CD192634             [                                                                                                                                                                                                                                                                                                      TGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTTGGGAGACACCCTAGCCAAA]
[-] EMBL CD192804             [                                                                                                                                                                                                                                                                                                      TGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACG                       ]


>consensus_8235#0 GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTT CCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAA GATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATA GAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCA CGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCA ACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAA TCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGA AAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAA TCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTT GGGAGACACCCTAGCCAAA



consensusID : consensus_8235#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence
                              [CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATGTCACATACCTGATTTATACGGAAAACGTGACCTCAGCCAGAATTCTCAAACAAGTTCTAAAATAAATTCTCATAAATTTAACTTTGGGAACATCTTCGTGCAGCATCACATCATCGTCGTCCAAAACATCAAATAGAAACCAAAACAGCTATACATCGAATTGAACGGGCTTTAAAAAATCTGGAGAAAACACCAATCGGTGGTGTGGCCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGATATATTAATATTAAAATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGAATTCACTTTTCTACATCGTCGCCATCTGTATCTTGTTCTATGCGAAGAACTATTAGGAAAACACGCGATAATGATA]

[+] EMBL CD083894             [CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATGTCACATACCTGATTTATACGGAAAACGTGACCTCAGCCAGAATTCTCAAACAAGTTCTAAAATAAATTCTCATAAATTTAACTTTGGGAACATCTTCGTGCAGCATCACATCATCGTCGTCCAAAACATCAAATAGAAACCAAAACAGCTATACATCGAATTGAACGGGCTTTAAAAAATCTGGAGAAAACACCAATCGGTGGTGTGGCCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGATATATTAATATTAAAATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGAATTCACTTTTCTACATCGTCGCCATCTGTATCTTGTTCTATGCGAAGAACTATTAGGAAAACACGCGATAATGATA]


>consensus_8235#1 CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATGTCACATACCTGATT TATACGGAAAACGTGACCTCAGCCAGAATTCTCAAACAAGTTCTAAAATAAATTCTCATA AATTTAACTTTGGGAACATCTTCGTGCAGCATCACATCATCGTCGTCCAAAACATCAAAT AGAAACCAAAACAGCTATACATCGAATTGAACGGGCTTTAAAAAATCTGGAGAAAACACC AATCGGTGGTGTGGCCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGA TATATTAATATTAAAATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGAATTCACTT TTCTACATCGTCGCCATCTGTATCTTGTTCTATGCGAAGAACTATTAGGAAAACACGCGA TAATGATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8235#0      GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTT 60
consensus_8235#1      --------------CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATG 46
                                      *      ****   *   ***  *    ***       *   * 

consensus_8235#0      CCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAA 120
consensus_8235#1      TCACATACCTGATTTATACGGAAAACGTGACCT----CAGCCAGAATTCTCAAACAAG-- 100
                       *  ***  * *  ***  * * *  *  *  *    *** ***     **    * *  

consensus_8235#0      GATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCA-AT 179
consensus_8235#1      -----TTCTAAAATAAA-------TTCTCATAAATT-TAACTTTGGGAACATCTTCGTGC 147
                           **    * ** *       *  *** ***** *  *  *       *****    

consensus_8235#0      AGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTC 239
consensus_8235#1      AGCATCACATCATCGTCGTCCAAAACATCAAATAGAAACCAAA----ACAGCTATACATC 203
                      ** **   ** *    * *  * **   ** ** *  **** *    * ** *   * **

consensus_8235#0      ACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTG- 298
consensus_8235#1      GAATTGAACGG--------GCTTTAAAAAATCTGGAGAAAACACCA-ATCGGTGGTGTGG 254
                         *** *  *          * *   ****** **     ** *  **  * * **** 

consensus_8235#0      CAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAA 358
consensus_8235#1      CCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGATATATTAATATTAA 314
                      *  *  * **  *   *  *  **  *       **      ** *  ***    ** **

consensus_8235#0      AATC--CAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGT 416
consensus_8235#1      AATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGA----ATTCACTTTTCTACATC- 369
                      ****  * ** * *  ** *  *  ****  *  *       ** ****   **  **  

consensus_8235#0      CAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATG 476
consensus_8235#1      ---------GTCGCCATCTGTATCTTGTTCTATG-CGAAGAACTATTAGGAAAACACGCG 419
                                * **** *****  *  **  **  **     **  *    *   *   *

consensus_8235#0      GAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACG 536
consensus_8235#1      ATAAT--GATA------------------------------------------------- 428
                        ***  ****                                                 

consensus_8235#0      TTTTGGGAGACACCCTAGCCAAA 559
consensus_8235#1      -----------------------
                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)