These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 559 fasta sequence [GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTTCCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAAGATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATAGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTTGGGAGACACCCTAGCCAAA] [+] EMBL CD125016 [GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTTCCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAAGATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATAGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATCCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATA ] [+] EMBL CD125023 [GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTTCCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAAGATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCAATAGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTCACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATCCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATA ] [-] EMBL CD192611 [ TGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTTGGGAGACACCCTAGCCAAA] [-] EMBL CD192634 [ TGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACGTTTTGGGAGACACCCTAGCCAAA] [-] EMBL CD192804 [ TGTGCAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAAAATCCAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGTCAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATGGAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACG ] consensusID : consensus_8235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATGTCACATACCTGATTTATACGGAAAACGTGACCTCAGCCAGAATTCTCAAACAAGTTCTAAAATAAATTCTCATAAATTTAACTTTGGGAACATCTTCGTGCAGCATCACATCATCGTCGTCCAAAACATCAAATAGAAACCAAAACAGCTATACATCGAATTGAACGGGCTTTAAAAAATCTGGAGAAAACACCAATCGGTGGTGTGGCCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGATATATTAATATTAAAATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGAATTCACTTTTCTACATCGTCGCCATCTGTATCTTGTTCTATGCGAAGAACTATTAGGAAAACACGCGATAATGATA] [+] EMBL CD083894 [CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATGTCACATACCTGATTTATACGGAAAACGTGACCTCAGCCAGAATTCTCAAACAAGTTCTAAAATAAATTCTCATAAATTTAACTTTGGGAACATCTTCGTGCAGCATCACATCATCGTCGTCCAAAACATCAAATAGAAACCAAAACAGCTATACATCGAATTGAACGGGCTTTAAAAAATCTGGAGAAAACACCAATCGGTGGTGTGGCCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGATATATTAATATTAAAATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGAATTCACTTTTCTACATCGTCGCCATCTGTATCTTGTTCTATGCGAAGAACTATTAGGAAAACACGCGATAATGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8235#0 GTTAAATTATGAGAATTTATTTTAGAACTTGTTTGAGAATTCTGGCTGAGGTCACGTTTT 60 consensus_8235#1 --------------CCTCGAGGCAGAATCGGCACGAGGCTGTCTGCTTCATCTTCCCATG 46 * **** * *** * *** * * consensus_8235#0 CCGTATAAATCAGGTATGTGAACATGGGAAGATGAAGCAGACAGGTACTTCGCGTAGGAA 120 consensus_8235#1 TCACATACCTGATTTATACGGAAAACGTGACCT----CAGCCAGAATTCTCAAACAAG-- 100 * *** * * *** * * * * * * *** *** ** * * consensus_8235#0 GATATTTTCGGAGTAGAAATCTGTTCGTCAGAAATTGTTCCACTAAACGGGTCTTCA-AT 179 consensus_8235#1 -----TTCTAAAATAAA-------TTCTCATAAATT-TAACTTTGGGAACATCTTCGTGC 147 ** * ** * * *** ***** * * * ***** consensus_8235#0 AGAATTGGATAAAACACTTGTAGAATCGCATATGGCCACCATAGCTGATAGTTGAGCTTC 239 consensus_8235#1 AGCATCACATCATCGTCGTCCAAAACATCAAATAGAAACCAAA----ACAGCTATACATC 203 ** ** ** * * * * ** ** ** * **** * * ** * * ** consensus_8235#0 ACGTTGTATAGCTTCTTCCATTATTCTAAATCTTGAAGCTTCATCGTATGAGCGTTGTG- 298 consensus_8235#1 GAATTGAACGG--------GCTTTAAAAAATCTGGAGAAAACACCA-ATCGGTGGTGTGG 254 *** * * * * ****** ** ** * ** * * **** consensus_8235#0 CAACGGTCAATTCGTCTCGAGTTGGCCGAGCAGGTCTAGCAACTAAAGTATGTCCATGAA 358 consensus_8235#1 CCTCATTGAAACCAATTACAAATGATCATTATAATCCTTATTCTGATATATTAATATTAA 314 * * * ** * * * ** * ** ** * *** ** ** consensus_8235#0 AATC--CAAACCATTCAACACTTTCCAAGCTTTCTTAGCATCATCCACTGACCTGTATGT 416 consensus_8235#1 AATCAGCGAATCCTGTAAAATGTGACAAGAATAATCGA----ATTCACTTTTCTACATC- 369 **** * ** * * ** * * **** * * ** **** ** ** consensus_8235#0 CAGAAAGCAATAGCCAACTGTAGATCCTTGCATATCGCCAGTCTTATGCACAGGAAAATG 476 consensus_8235#1 ---------GTCGCCATCTGTATCTTGTTCTATG-CGAAGAACTATTAGGAAAACACGCG 419 * **** ***** * ** ** ** ** * * * * consensus_8235#0 GAAATCGGATAACTCTCCGAATTGTTTAGCTAGCTGCAAAACCGAAAATTCCGTAATACG 536 consensus_8235#1 ATAAT--GATA------------------------------------------------- 428 *** **** consensus_8235#0 TTTTGGGAGACACCCTAGCCAAA 559 consensus_8235#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||