cluster # 8241

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Schistosoma mansoni
cluster # 8241 cluster # 8241 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8241#0 length = 387 sequences # 5

consensus_8241#1 length = 272 sequences # 1

consensusID : consensus_8241#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 387
fasta sequence

                              [TCAAATATTTATTATTATTATAATCATTATTGTCAAATCAAAACATATTTCGGTAATTACAAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGT-C-TTCT-CAGTTATATTGAATACC--GGCAT-ACTG-CAGTTG-CAA-TCAG-AACAGAA-CCTATTACGGTGTAATATGCTCCTG-TCATCGTAGCACCAGATACCGATGCCTTAGGTGTAGGCGGTTTTGGC-TTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAG-CAAAGAT-ACAAATGA-ATCTCGAAGTAATAATGTT-CATATT-CTATGAGTATGTACGTGTGT]

[+] EMBL AA999532             [TCAAATATTTATTATTATTATAATCATTATTGTCAAATCAAAACATATTTCGGTAATTACAAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGT C TTCT CAGTTATATTGAATACC  GGCAT ACTG CAGTTG CAA TCAG AACAGAA CCTATTACGGTGTAATATGCTCCTG TCATCGTAGCACCAGATACCGATGCCTTAGGTGTAGGCGGTTTTGGC TTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAG CAAAGAT ACAAATGA ATC                                            ]
[-] EMBL SMAA43889            [  AAATATTTATTATTATTATAATCATTATTGTCAAATCAAAACATATTTCGGTAATTACAAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGT C TTCT CAGTTATATTGAATACC  GGCAT ACTG CAGTTG CAA TCAG AACAGAA CCTATTACGGTGTAATATGCTCCTG                                                                                                                                                                                                                ]
[+] EMBL AA999261             [      ATTTATTATTATTATAATCATTATTTTCAAATCAAAACATATTTCGGTAATTACAAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGT C TTCT CAGTTATATTGAATACC  GGCAT ACTG CAGTTG CAA TCAG AACAGAA CCTATTACGGTGTAATATGCTCCTG TCATCGTAGCACCAGATACCGATGCCTTAGGTGTAGGCGGTTTTGGC TTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAG CAAAGAT ACAAATGATCTCTCGAA                                       ]
[-] EMBL AA559755             [                                                                                                       TACTCGTNCTTTCTCCAGTTATATTGAATACCCGGGCATAACTGCCAGTTGCCAATTCAGAAACAGAACCCTATTACGGTGTAATATGCTCCTGTTCATCGTAGCACCAGATACCGATGCCTTAGGTGTAGGCGGTTTTGGCTTTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAGCCAAAGATAACAAATGA ATCTCGAAGTAATAATGTTNCATATTNCTATGAGTATGTACG     ]
[-] EMBL AA559410             [                                                                                                       TACTNGT C TTCT CAGTTATATTGAATACC  GGCAT ACTG CAGTTG CAA TCAG AACAGAA CCNATTACGGTGTAATATGCTCCNG TCATCGTAGCACCAGATACCGATGCCCTAGGTGTAGGCGGTTTTGGC TTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCNAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAG CAAAGAT ACAAATGA ATCTCGAAGTAATAATGTT CATATT CTATGAGTATGTACGTGTGT]




>consensus_8241#0
TCAAATATTTATTATTATTATAATCATTATTGTCAAATCAAAACATATTTCGGTAATTAC
AAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGTCTTCTCAGTT
ATATTGAATACCGGCATACTGCAGTTGCAATCAGAACAGAACCTATTACGGTGTAATATG
CTCCTGTCATCGTAGCACCAGATACCGATGCCTTAGGTGTAGGCGGTTTTGGCTTCGGTG
TAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAA
TATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAAGTAATAATGT
TCATATTCTATGAGTATGTACGTGTGT

consensusID : consensus_8241#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [AGGGCTGGCACACTGCCCAAATTAACAAACCGAAGCAGGTGGTTTTCTGCATTGCCTAGTGCATCAGAGAATCGGAGTAGGAGGTCTATGCTCCTCCATGGGCACTTTTGGCTTCGGTGTAGTTGATGTGGGCGGTTCACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAGGTAATAATGTTCATATTCTATGAGTATGTACGTGTGTGTGTGT]

[+] EMBL CD134997             [AGGGCTGGCACACTGCCCAAATTAACAAACCGAAGCAGGTGGTTTTCTGCATTGCCTAGTGCATCAGAGAATCGGAGTAGGAGGTCTATGCTCCTCCATGGGCACTTTTGGCTTCGGTGTAGTTGATGTGGGCGGTTCACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAGGTAATAATGTTCATATTCTATGAGTATGTACGTGTGTGTGTGT]




>consensus_8241#1
AGGGCTGGCACACTGCCCAAATTAACAAACCGAAGCAGGTGGTTTTCTGCATTGCCTAGT
GCATCAGAGAATCGGAGTAGGAGGTCTATGCTCCTCCATGGGCACTTTTGGCTTCGGTGT
AGTTGATGTGGGCGGTTCACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAAT
ATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAGGTAATAATGTT
CATATTCTATGAGTATGTACGTGTGTGTGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8241#0      TCAAATATTTATTATTATTATAATCATTATTGTCAAATCAAAACATATTTCGGTAATTAC 60
consensus_8241#1      ------------------------------------------------------------
                                                                                  

consensus_8241#0      AAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGTCTTCTCAGTT 120
consensus_8241#1      ------------------------------------------------------------
                                                                                  

consensus_8241#0      ATATTGAATACCGGCATACTGCAGTTGCAATCAGAACAGAACCTATTACGGTGTAATATG 180
consensus_8241#1      ------AGGGCTGGCACACTGCCCAAATTAACAAACCGAAGCAGGTGGTTTTCTGCATTG 54
                            *   * **** *****       * ** * *  * *   *     * *    **

consensus_8241#0      CTCCTGTCATCGTAGCACCAGATACCGATGCCTTAGGT-----GTAGGCGGTTTTGGCTT 235
consensus_8241#1      CCTAGTGCATCAGAGAATCGGAGTAGGAGGTCTATGCTCCTCCATGGGCACTTTTGGCTT 114
                      *      ****  ** * * **    ** * **  * *      * ***  *********

consensus_8241#0      CGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATA 295
consensus_8241#1      CGGTGTAGTTGATGTGGGCGGTTCACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATA 174
                      *********************** ************************************

consensus_8241#0      TTGAATATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAAGTAAT 355
consensus_8241#1      TTGAATATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAGGTAAT 234
                      ****************************************************** *****

consensus_8241#0      AATGTTCATATTCTATGAGTATGTACGTGTGT------ 387
consensus_8241#1      AATGTTCATATTCTATGAGTATGTACGTGTGTGTGTGT 272
                      ********************************