These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 387 fasta sequence [TCAAATATTTATTATTATTATAATCATTATTGTCAAATCAAAACATATTTCGGTAATTACAAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGT-C-TTCT-CAGTTATATTGAATACC--GGCAT-ACTG-CAGTTG-CAA-TCAG-AACAGAA-CCTATTACGGTGTAATATGCTCCTG-TCATCGTAGCACCAGATACCGATGCCTTAGGTGTAGGCGGTTTTGGC-TTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAG-CAAAGAT-ACAAATGA-ATCTCGAAGTAATAATGTT-CATATT-CTATGAGTATGTACGTGTGT] [+] EMBL AA999532 [TCAAATATTTATTATTATTATAATCATTATTGTCAAATCAAAACATATTTCGGTAATTACAAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGT C TTCT CAGTTATATTGAATACC GGCAT ACTG CAGTTG CAA TCAG AACAGAA CCTATTACGGTGTAATATGCTCCTG TCATCGTAGCACCAGATACCGATGCCTTAGGTGTAGGCGGTTTTGGC TTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAG CAAAGAT ACAAATGA ATC ] [-] EMBL SMAA43889 [ AAATATTTATTATTATTATAATCATTATTGTCAAATCAAAACATATTTCGGTAATTACAAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGT C TTCT CAGTTATATTGAATACC GGCAT ACTG CAGTTG CAA TCAG AACAGAA CCTATTACGGTGTAATATGCTCCTG ] [+] EMBL AA999261 [ ATTTATTATTATTATAATCATTATTTTCAAATCAAAACATATTTCGGTAATTACAAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGT C TTCT CAGTTATATTGAATACC GGCAT ACTG CAGTTG CAA TCAG AACAGAA CCTATTACGGTGTAATATGCTCCTG TCATCGTAGCACCAGATACCGATGCCTTAGGTGTAGGCGGTTTTGGC TTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAG CAAAGAT ACAAATGATCTCTCGAA ] [-] EMBL AA559755 [ TACTCGTNCTTTCTCCAGTTATATTGAATACCCGGGCATAACTGCCAGTTGCCAATTCAGAAACAGAACCCTATTACGGTGTAATATGCTCCTGTTCATCGTAGCACCAGATACCGATGCCTTAGGTGTAGGCGGTTTTGGCTTTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAGCCAAAGATAACAAATGA ATCTCGAAGTAATAATGTTNCATATTNCTATGAGTATGTACG ] [-] EMBL AA559410 [ TACTNGT C TTCT CAGTTATATTGAATACC GGCAT ACTG CAGTTG CAA TCAG AACAGAA CCNATTACGGTGTAATATGCTCCNG TCATCGTAGCACCAGATACCGATGCCCTAGGTGTAGGCGGTTTTGGC TTCGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCNAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAG CAAAGAT ACAAATGA ATCTCGAAGTAATAATGTT CATATT CTATGAGTATGTACGTGTGT] consensusID : consensus_8241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [AGGGCTGGCACACTGCCCAAATTAACAAACCGAAGCAGGTGGTTTTCTGCATTGCCTAGTGCATCAGAGAATCGGAGTAGGAGGTCTATGCTCCTCCATGGGCACTTTTGGCTTCGGTGTAGTTGATGTGGGCGGTTCACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAGGTAATAATGTTCATATTCTATGAGTATGTACGTGTGTGTGTGT] [+] EMBL CD134997 [AGGGCTGGCACACTGCCCAAATTAACAAACCGAAGCAGGTGGTTTTCTGCATTGCCTAGTGCATCAGAGAATCGGAGTAGGAGGTCTATGCTCCTCCATGGGCACTTTTGGCTTCGGTGTAGTTGATGTGGGCGGTTCACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATATTGAATATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAGGTAATAATGTTCATATTCTATGAGTATGTACGTGTGTGTGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8241#0 TCAAATATTTATTATTATTATAATCATTATTGTCAAATCAAAACATATTTCGGTAATTAC 60 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 AAACGAAAAGAAAATGTTCTAAAGAATACTGTTTTCAAATGGTTACTCGTCTTCTCAGTT 120 consensus_8241#1 ------------------------------------------------------------ consensus_8241#0 ATATTGAATACCGGCATACTGCAGTTGCAATCAGAACAGAACCTATTACGGTGTAATATG 180 consensus_8241#1 ------AGGGCTGGCACACTGCCCAAATTAACAAACCGAAGCAGGTGGTTTTCTGCATTG 54 * * **** ***** * ** * * * * * * * ** consensus_8241#0 CTCCTGTCATCGTAGCACCAGATACCGATGCCTTAGGT-----GTAGGCGGTTTTGGCTT 235 consensus_8241#1 CCTAGTGCATCAGAGAATCGGAGTAGGAGGTCTATGCTCCTCCATGGGCACTTTTGGCTT 114 * **** ** * * ** ** * ** * * * *** ********* consensus_8241#0 CGGTGTAGTTGATGTGGGCGGTTTACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATA 295 consensus_8241#1 CGGTGTAGTTGATGTGGGCGGTTCACTTTCCTCACCAAATAAGCTTGAAGCTTTTGTATA 174 *********************** ************************************ consensus_8241#0 TTGAATATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAAGTAAT 355 consensus_8241#1 TTGAATATGATGACTAAATGATAAGATGATAGCAAAGATACAAATGAATCTCGAGGTAAT 234 ****************************************************** ***** consensus_8241#0 AATGTTCATATTCTATGAGTATGTACGTGTGT------ 387 consensus_8241#1 AATGTTCATATTCTATGAGTATGTACGTGTGTGTGTGT 272 ******************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||