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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1117 fasta sequence
[GCCAANAATTCGGCACGAGGCCNAAATCATGATATCCAATATGGAACAAAATGAAACGATGTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATAATAGTTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGAAGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATTAGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAATTGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATCTATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGTCAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGTCCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAACTATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCATTCGTATTATCAAGGAGGANAAACAAGCCAACAAACAAACATGTACAGTGTTCACATTTTATGTATTCAATAATCAATTTATTTTGCAAAAAATCTTTTTTTTTTGCTGCTCATTTTTCTTCTACCCTTTTTTTTGAACTGCCAAAAAATGTTCGTCTTTCATTACTAATTACTATCAGTAGTAAAGTGAATCTGTTTTTTTTTAAAATATTTCTATATTGAACTGTATCAATAAATCAAGGTTAAGAAACAATTGGGGGTTGGAGGGGAGGTGGAGTAGGGATTTCTCTATTTCTTTACATATAGTTTATAGAAATATATTTTATTACCCTATTACCATGATAGATTATATATGATGAGTGTATCCATCTCAAGGTTTATTTTTATTATTCTTATTATTGTAAATCTTATTTTGTTATAATTTTCATTAGAAATGAAGATTTTTATATTTTGTATTATATTGTATGTTCTAATATATTAGAACAAGACCTA-ATGTAATTTGAATTTGATACCCAATT]
[+] EMBL CD080773 [GCCAANAATTCGGCACGAGGCCNAAATCATGATATCCAATATGGAACAAAATGAAACGATGTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATAATAGTTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGAAGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATTAGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAATTGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATCTATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGTCAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGTCCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAACTATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCATTCGTATTATCAAGGAGGANAAACAAGCCAACAAACAAACATGTACAGTGTTCACATTTTATGTATTCAATAATCAATTTATTTTGC ANAAATCTTTT ]
[-] EMBL CD074698 [ CCTAATCATTCGTATTATCAAGGAGGAAAAACAAGCCAACAAACAAACATGTACAGTGTTCACATTTTATGTATTCAATAATCAATTTATTTTGCAAAAAATCTTTTTTTTTTGCTGCTCATTTTTCTTCTACCCTTTTTTTTGAACTGCCAAAAAATGTTCGTCTTTCATTACTAATTACTATCAGTAGTAAAGTGAATCTGTTTTTTTTTAAAATATTTCTATATTGAACTGTATCAATAAATCAAGGTTAAGAAACAATTGGGGGTTGGAGGGGAGGTGGAGTAGGGATTTCTCTATTTCTTTACATATAGTTTATAGAAATATATTTTATTACCCTATTACCATGATAGATTATATATGATGAGTGTATCCATCTCAAGGTTTATTTTTATTATTCTTATTATTGTAAATCTTATTTTGTTATAATTTTCATTAGAAATGAAGATTTTTATATTTTGTATTATATTGTATGTTCTAATATATTAGAACAAGACCTA ATGTAATTTGAATTTGATACCCAATT]
[-] EMBL CD076644 [ CATTTTATGTATTCAATAATCAATTTATTTTGCAAAAAATCTTTTTTTTTTGCTGCTCATTTTTTTTTTACCCTTTTTTTTGAACTGCCAAAAAATGTTCGTCTTTCATTACTAATTACTATCAGTAGTAAAGTGAATTTGTTTTTTTTTAAAATATTTTTATATTGAACTGTATCAATAAATCAAGGTTAAGAAACAATTGGGGGTTGGAGGGGAGGTG ]
[-] EMBL CD076643 [ TATAGAAATATATTTTATTACCCTATTACCATGATAGATTATATATGATGAGTGTATCCATTTCAAGGTTTATTTTTATTATTTTTATTATTGTAAATTTTATTTTGTTATAATTTTCATTAGAAATGAAGATTTTTATATTTTGTATTATATTGTATGTTTTAATATATTAGAACAAG GCTATATGTAATTTGAATTTGATACCCAATT]
consensusID : consensus_8243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[AGGGCTTCCAAGAGGATAAAGAAATCATGATATCCAATATGGAACAAAATGAAACGATGTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATCATAGTTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGAAGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATTAGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAATTGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATCTATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGTCAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGTCCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAACTATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCATTCGTATTATCAAG]
[+] EMBL CD083070 [AGGGCTTCCAAGAGGATAAAGAAATCATGATATCCAATATGGAACAAAATGAAACGATGTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATCATAGTTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGAAGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATTAGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAATTGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATCTATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGTCAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGTCCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAACTATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCATTCGTATTATCAAG]
consensusID : consensus_8243#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence
[GTTTCATTTTGTTCCATATTGGATATCATGATTTCTTTATCCTCTTGGTAACTACTATTATGATGATGATGTAATGAAGGGGTGGTAGTAGTAGTAGTAGTAGAAGAAGAAGTGGTAGTAGTAGTAGGATGTGAAGATATCATCATTTCATTATTTAAAAAAATACTATCATATGCTAATAATAATGAACTATCATAGAAATGATAATAATTNTGATTTTCAAACCATT]
[+] EMBL CD066324 [GTTTCATTTTGTTCCATATTGGATATCATGATTTCTTTATCCTCTTGGTAACTACTATTATGATGATGATGTAATGAAGGGGTGGTAGTAGTAGTAGTAGTAGAAGAAGAAGTGGTAGTAGTAGTAGGATGTGAAGATATCATCATTTCATTATTTAAAAAAATACTATCATATGCTAATAATAATGAACTATCATAGAAATGATAATAATTNTGATTTTCAAACCATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8243#0 GCCAANAATTCGGCACGAGGCCNAAATCATGATATCCAATATGGAACAAAATGAAACGAT 60
consensus_8243#1 --AGGGCTTCCAAGAGGATAAAGAAATCATGATATCCAATATGGAACAAAATGAAACGAT 58
consensus_8243#2 -----------------------------------------------------GTTTCAT 7
**
consensus_8243#0 GTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATAATAG 120
consensus_8243#1 GTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATCATAG 118
consensus_8243#2 TTTGT-TCCATATTGGATATCATGATTTCTTTATCCTCTTGGTAACTACTATTATGATGA 66
** * *** *** * * * * ** ** ** ** * * * * *** ** **
consensus_8243#0 TTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGA 180
consensus_8243#1 TTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGA 178
consensus_8243#2 TGAT-GTAATGAAGGGGTGGTAGTAGTAGTAGTAGTAGAAGAAGAAGTGGTAGTAGTAGT 125
* * ** * * * * * * ***** ** ** ** **
consensus_8243#0 AGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATT 240
consensus_8243#1 AGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATT 238
consensus_8243#2 AGGATGTGAAGAT-ATCATCATTTCATTATTTAAAAAAATACTATCATATGCTAA----T 180
** *** * * * ** * * **** ** * * * * * * * *
consensus_8243#0 AGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAAT 300
consensus_8243#1 AGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAAT 298
consensus_8243#2 AATAATGAACTATCAT------AGAAATGATAATAATTNTGATT-TTCAAACCATT---- 229
* *** ** * * ** * * **** *** ** ** ** *** ***
consensus_8243#0 TGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATC 360
consensus_8243#1 TGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATC 358
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 TATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGT 420
consensus_8243#1 TATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGT 418
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 CAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGT 480
consensus_8243#1 CAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGT 478
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 CCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAAC 540
consensus_8243#1 CCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAAC 538
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 TATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCAT 600
consensus_8243#1 TATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCAT 598
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 TCGTATTATCAAGGAGGANAAACAAGCCAACAAACAAACATGTACAGTGTTCACATTTTA 660
consensus_8243#1 TCGTATTATCAAG----------------------------------------------- 611
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 TGTATTCAATAATCAATTTATTTTGCAAAAAATCTTTTTTTTTTGCTGCTCATTTTTCTT 720
consensus_8243#1 ------------------------------------------------------------
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 CTACCCTTTTTTTTGAACTGCCAAAAAATGTTCGTCTTTCATTACTAATTACTATCAGTA 780
consensus_8243#1 ------------------------------------------------------------
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 GTAAAGTGAATCTGTTTTTTTTTAAAATATTTCTATATTGAACTGTATCAATAAATCAAG 840
consensus_8243#1 ------------------------------------------------------------
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 GTTAAGAAACAATTGGGGGTTGGAGGGGAGGTGGAGTAGGGATTTCTCTATTTCTTTACA 900
consensus_8243#1 ------------------------------------------------------------
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 TATAGTTTATAGAAATATATTTTATTACCCTATTACCATGATAGATTATATATGATGAGT 960
consensus_8243#1 ------------------------------------------------------------
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 GTATCCATCTCAAGGTTTATTTTTATTATTCTTATTATTGTAAATCTTATTTTGTTATAA 1020
consensus_8243#1 ------------------------------------------------------------
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 TTTTCATTAGAAATGAAGATTTTTATATTTTGTATTATATTGTATGTTCTAATATATTAG 1080
consensus_8243#1 ------------------------------------------------------------
consensus_8243#2 ------------------------------------------------------------
consensus_8243#0 AACAAGACCTAATGTAATTTGAATTTGATACCCAATT 1117
consensus_8243#1 -------------------------------------
consensus_8243#2 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||