cluster # 8245

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Schistosoma mansoni
cluster # 8245 cluster # 8245 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8245#0 length = 852 sequences # 2
consensus_8245#1 length = 488 sequences # 2

consensus_8245#2 length = 449 sequences # 1
consensus_8245#3 length = 389 sequences # 1

consensusID : consensus_8245#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 852
fasta sequence

                              [CAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAATGGTCTGGAAATGTTTTAGTTGAAATATCACAAGCTTGAGTCATATTGGTAGAACTTTGTCGTAGCATCTGTTCACTGGCTAGAACAGCCGACCAAAATATGGCATTAGTACCAATAGTTTTAAAATACTCCGCCCATAAAGCTCTTTGTTTATTTGTGAGAAAGTCAGACTTATTAACAAGAACCACACATGTCTTGTTCGAATCAACTTCATGGATGTATCTATCTAAATCACTCGAATAATATAAAAGAGGCTGACGAGCATCGACCACCTGGACGACAACGTCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTACAGGAAAGCCAACGATCGTCTCCATTTCAAGAATTCTTCTTTTTCAAGATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTGAGTAAGTCTTCGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGTATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAAGAATTCATCTAAACCTGTTTATTCTGTGACTGAATGAACAGGTAAACGAGACCAATCCCCAGCAGTGTTTGTTCGAACTACATGACGCCCTGATCTTTCAGAAGGTTCTGATCCAATATGTTTAACAAGAGAGCGTCCGAGACCATGTTTTCTGCCCATGTAACGCACC]

[+] EMBL CD163224             [CAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAATGGTCTGGAAATGTTTTAGTTGAAATATCACAAGCTTGAGTCATATTGGTAGAACTTTGTCGTAGCATCTGTTCACTGGCTAGAACAGCCGACCAAAATATGGCATTAGTACCAATAGTTTTAAAATACTCCGCCCATAAAGCTCTTTGTTTATTTGTGAGAAAGTCAGACTTATTAACAAGAACCACACATGTCTTGTTCGAATCAACTTCATGGATGTATCTATCTAAATCACTCGAATAATATAAAAGAGGCTGACGAGCATCGACCACCTGGACGACAACGTCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTACAGG                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD162881             [                                                                                                                                                                                                                                                                                                                                                        GTCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTCCAGCAAAGCCAACGATCGTCTCCATTTCAAGAATTCTTCTTTTTCAAGATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTGAGTAAGTCTTCGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGTATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAAGAATTCATCTAAACCTGTTTATTCTGTGACTGAATGAACAGGTAAACGAGACCAATCCCCAGCAGTGTTTGTTCGAACTACATGACGCCCTGATCTTTCAGAAGGTTCTGATCCAATATGTTTAACAAGAGAGCGTCCGAGACCATGTTTTCTGCCCATGTAACGCACC]




>consensus_8245#0
CAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAA
TGGTCTGGAAATGTTTTAGTTGAAATATCACAAGCTTGAGTCATATTGGTAGAACTTTGT
CGTAGCATCTGTTCACTGGCTAGAACAGCCGACCAAAATATGGCATTAGTACCAATAGTT
TTAAAATACTCCGCCCATAAAGCTCTTTGTTTATTTGTGAGAAAGTCAGACTTATTAACA
AGAACCACACATGTCTTGTTCGAATCAACTTCATGGATGTATCTATCTAAATCACTCGAA
TAATATAAAAGAGGCTGACGAGCATCGACCACCTGGACGACAACGTCGCTACGTTCCACG
ACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCA
TCTTTTTCTTACAGGAAAGCCAACGATCGTCTCCATTTCAAGAATTCTTCTTTTTCAAGA
TTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTGAGT
AAGTCTTCGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGTATG
CCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTGAGCCTTGAATTCATGA
TTGGCAAGGTTGGCAATATTAAAGAATTCATCTAAACCTGTTTATTCTGTGACTGAATGA
ACAGGTAAACGAGACCAATCCCCAGCAGTGTTTGTTCGAACTACATGACGCCCTGATCTT
TCAGAAGGTTCTGATCCAATATGTTTAACAAGAGAGCGTCCGAGACCATGTTTTCTGCCC
ATGTAACGCACC

consensusID : consensus_8245#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 488
fasta sequence

                              [TTAAACCATCTTTTACTTGTGTATTTTGGGATTTAGGAAGGTTGATTCCATACATTGTCTCCAAAATATGACGTGGGATTCTTTCCCAAACTAAACCAACAGGAGCTAAATAATCACGCATCCCATCGATTGATAATATACCAGCTACAACTAAGTCTGCTCTACAGTAGGCAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAATGGTCTGGAAATGTTTGGTTTTCCCAGGTGTAACTGACACTGGAACCTTTTTATGACCTAGTATCGCATTGAGTGTACTAGATTTCCCGACGTTTGGGTAACCAATGAAGCCGACAGTCAAAGGATCTTTTGATTGACGACTGGATGGACTGTATTTTTCAGTTAATAAATTTATCAGCTCCTCAACTCCAACAAGCTTAGCCTCCGCCTCACCATTTTGTTTGGATTGAATAGATGTTTCAGCATCAATAACATCG]

[+] EMBL CD066361             [TTAAACCATCTTTTACTTGTGTATTTTGGGATTTAGGAAGGTTGATTCCATACATTGTCTCCAAAATATGACGTGGGATTCTTTCCCAAACTAAACCAACAGGA                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD160289             [                                                    CATTGTCTCCAAAATATGACGTGGAATTCTTTCACAAACTAAACCAACAGGAGCTAAATAATCACGCATCCCATCGATTGATAATATACCAGCTACAACTAAGTCTGCTCTACAGTAGGCAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAATGGTCTGGAAATGTTTGGTTTTCCCAGGTGTAACTGACACTGGAACCTTTTTATGACCTAGTATCGCATTGAGTGTACTAGATTTCCCGACGTTTGGGTAACCAATGAAGCCGACAGTCAAAGGATCTTTTGATTGACGACTGGATGGACTGTATTTTTCAGTTAATAAATTTATCAGCTCCTCAACTCCAACAAGCTTAGCCTCCGCCTCACCATTTTGTTTGGATTGAATAGATGTTTCAGCATCAATAACATCG]




>consensus_8245#1
TTAAACCATCTTTTACTTGTGTATTTTGGGATTTAGGAAGGTTGATTCCATACATTGTCT
CCAAAATATGACGTGGGATTCTTTCCCAAACTAAACCAACAGGAGCTAAATAATCACGCA
TCCCATCGATTGATAATATACCAGCTACAACTAAGTCTGCTCTACAGTAGGCAAAAGATG
GCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAATGGTCTGGA
AATGTTTGGTTTTCCCAGGTGTAACTGACACTGGAACCTTTTTATGACCTAGTATCGCAT
TGAGTGTACTAGATTTCCCGACGTTTGGGTAACCAATGAAGCCGACAGTCAAAGGATCTT
TTGATTGACGACTGGATGGACTGTATTTTTCAGTTAATAAATTTATCAGCTCCTCAACTC
CAACAAGCTTAGCCTCCGCCTCACCATTTTGTTTGGATTGAATAGATGTTTCAGCATCAA
TAACATCG

consensusID : consensus_8245#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [CGATTTCAGAGTTCTCCTCCAATTCTGTTGGGCGCGATGTTATTGATGCTGAAACATCTATTCAATCCAAACAAAATGGTGGGGNCGGAGGCTAAGCTTGTTGGAGTTGAGGAGCTGATAAATTTATTAACTGAAAAATACAGTCCATCCAGTCGTCAATCAAAAGATCCTTTGACTGNTCGGCTTCATTGGTTACCCAAACGTCGGGAAATCTAGTACACTCAACGCGATACTAGGTCATAAAAAGGTTCCAGTGTCAGTTACACCTGGGAAAACCAAACATTTCCAGGTAGATGTTTTATGCTCATTTTTGTCCGCAGTGACTAAAAAATTTCTTGTTCTTNTTGATGTTATTAATGAATTATTNTATTTTCTGGGCTTTTAGACCATTTATGTCCGATCAGACTTGATACTNTGTGATTGCCCGGGATTTGTAATGCCATCTTTTG]

[+] EMBL CD181173             [CGATTTCAGAGTTCTCCTCCAATTCTGTTGGGCGCGATGTTATTGATGCTGAAACATCTATTCAATCCAAACAAAATGGTGGGGNCGGAGGCTAAGCTTGTTGGAGTTGAGGAGCTGATAAATTTATTAACTGAAAAATACAGTCCATCCAGTCGTCAATCAAAAGATCCTTTGACTGNTCGGCTTCATTGGTTACCCAAACGTCGGGAAATCTAGTACACTCAACGCGATACTAGGTCATAAAAAGGTTCCAGTGTCAGTTACACCTGGGAAAACCAAACATTTCCAGGTAGATGTTTTATGCTCATTTTTGTCCGCAGTGACTAAAAAATTTCTTGTTCTTNTTGATGTTATTAATGAATTATTNTATTTTCTGGGCTTTTAGACCATTTATGTCCGATCAGACTTGATACTNTGTGATTGCCCGGGATTTGTAATGCCATCTTTTG]




>consensus_8245#2
CGATTTCAGAGTTCTCCTCCAATTCTGTTGGGCGCGATGTTATTGATGCTGAAACATCTA
TTCAATCCAAACAAAATGGTGGGGNCGGAGGCTAAGCTTGTTGGAGTTGAGGAGCTGATA
AATTTATTAACTGAAAAATACAGTCCATCCAGTCGTCAATCAAAAGATCCTTTGACTGNT
CGGCTTCATTGGTTACCCAAACGTCGGGAAATCTAGTACACTCAACGCGATACTAGGTCA
TAAAAAGGTTCCAGTGTCAGTTACACCTGGGAAAACCAAACATTTCCAGGTAGATGTTTT
ATGCTCATTTTTGTCCGCAGTGACTAAAAAATTTCTTGTTCTTNTTGATGTTATTAATGA
ATTATTNTATTTTCTGGGCTTTTAGACCATTTATGTCCGATCAGACTTGATACTNTGTGA
TTGCCCGGGATTTGTAATGCCATCTTTTG

consensusID : consensus_8245#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [TCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTCCAGCAAAGCCAACGATCGTCTCCATTTCAAGAATTCTTCTTTTTCAAGATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTGAGTAAGTCTTTGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGTATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTCTGAAAATGATATGATGGGGATTAAAAGCCTTACGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAAGAATTCATCTAAACCTG]

[-] EMBL CD180714             [TCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTCCAGCAAAGCCAACGATCGTCTCCATTTCAAGAATTCTTCTTTTTCAAGATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTGAGTAAGTCTTTGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGTATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTCTGAAAATGATATGATGGGGATTAAAAGCCTTACGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAAGAATTCATCTAAACCTG]




>consensus_8245#3
TCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGA
GTAAGAACGATGCCATCTTTTTCTTCCAGCAAAGCCAACGATCGTCTCCATTTCAAGAAT
TCTTCTTTTTCAAGATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTT
CTGGGTATTTTGAGTAAGTCTTTGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCG
GAGGAAGATGGTATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTCT
GAAAATGATATGATGGGGATTAAAAGCCTTACGAGCCTTGAATTCATGATTGGCAAGGTT
GGCAATATTAAAGAATTCATCTAAACCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8245#0      CAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAA 60
consensus_8245#3      ------------------------------------------------------------
consensus_8245#1      ------------------------------------------------------------
consensus_8245#2      ------------------------------------------------------------
                                                                                  

consensus_8245#0      TGGTCTGGAAATGTTTTAGTTGAAATATCACAAGCTTGAGTCATATTGGTAGAACTTTGT 120
consensus_8245#3      ------------------------------------------------------------
consensus_8245#1      ------------------------------------------------------------
consensus_8245#2      ------------------------------------------------------------
                                                                                  

consensus_8245#0      CGTAGCATCTGTTCACTGGCTAGAACAGCCGACCAAAATATGGCATTAGTACCAATAGTT 180
consensus_8245#3      ------------------------------------------------------------
consensus_8245#1      ------------------------------------------------------------
consensus_8245#2      ------------------------------------------------------------
                                                                                  

consensus_8245#0      TTAAAATACTCCGCCCATAAAGCTCTTTGTTTATTTGTGAGAAAGTCAGACTTATTAACA 240
consensus_8245#3      ------------------------------------------------------------
consensus_8245#1      ----------------------------------------------------TTAAACCA 8
consensus_8245#2      ------------------------------------------------------------
                                                                                  

consensus_8245#0      AGAACCACACATGTCTTGTTCGAATCAACTTCATGGATGTATCTATCTAAATCACTCGAA 300
consensus_8245#3      ------------------------------------------------------------
consensus_8245#1      TCTTTTACTTGTGTATTTTGGGATTTAGGAAGGTTGATTCCATACATTGTCTCCAAAATA 68
consensus_8245#2      ------------------------------------------------------------
                                                                                  

consensus_8245#0      TAATATAAAAGAGGCTGACGAGCATCGACCACCTGGACGACAACGTCGCTACGTTCCA-C 359
consensus_8245#3      ---------------------------------------------TCGCTACGTTCCA-C 14
consensus_8245#1      TGACGTGGGATTCTTTCCCAAACTAAACCAACAGGAGCTAAATAATCAC-GCATCCCATC 127
consensus_8245#2      CGATTTCAGAGTTCTCCTCCAATTCTGTTGGGCGCGATGTTATTGATGCTGAAACATCTA 60
                                                                      *           

consensus_8245#0      GACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCC 419
consensus_8245#3      GACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCC 74
consensus_8245#1      GATTGATAATATACCA-GCTACAACT---AAGTCTGCTCTACAGTAGGCAAAA-GATGGC 182
consensus_8245#2      TTCAATCCAAACAAAATGGTGGGGNCGGAGGCTAAGCT-TGTTGGAGTTGAGGAGCTGAT 119
                              * *    * *              *  ***     * **       * **  

consensus_8245#0      ATCTTTTTCTTACAGGAAAGCCAACG-ATCGTCTCCATTTCAAGAATTCTTCTTTTTCAA 478
consensus_8245#3      ATCTTTTTCTTCCAGCAAAGCCAACG-ATCGTCTCCATTTCAAGAATTCTTCTTTTTCAA 133
consensus_8245#1      ATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATC---GGACATAAATGGTCTGG 239
consensus_8245#2      AAATTTATTAACTGAAAAATACAGTCCATCCAGTCGTCAATCAAAAGATCCTTTGACTGN 179
                      *               **   **    ***   **          *      *       

consensus_8245#0      GATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTG- 537
consensus_8245#3      GATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTG- 192
consensus_8245#1      AAATGTTTG--GTTTTCCCAGGTGTAACTGA----CACTGGAACCTTTTTATGACCT--- 290
consensus_8245#2      TCGGCTTCATTGGTTACCCAAACGTCGG-GAAATCTAGTACACTCAACGCGATACTAGGT 238
                           *     *  *   *     *    **     * *     *        *      

consensus_8245#0      AGTAAGTCTTCGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGT 597
consensus_8245#3      AGTAAGTCTTTGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGT 252
consensus_8245#1      AGTATCGCATTGAGTGTACTA-GATTTCCCGACGTTT--GGGTAACCA-ATGAAGCCGAC 346
consensus_8245#2      CATAAAAAGGTTCCAGTGTCAGTTACACCTGGGAAAACCAAACATTTCCAGGTAGATGTT 298
                        **            *   *       * *            *     * * **  *  

consensus_8245#0      ATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCT-------------- 643
consensus_8245#3      ATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTCTGAAAATGATATG 312
consensus_8245#1      AGTCAAAGGATCTTTTGATTGACGACTGGATGGACTGTATTTTTCAGTTAA--TAAATTT 404
consensus_8245#2      TTATGCTCATTTTTGTCCGCAGTGACTAAAAAATTTCTTGTTCTTNTTGA---TGTTATT 355
                                * *           *            *  ** *                

consensus_8245#0      --------------------GAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAA 683
consensus_8245#3      ATGGGGATTAAAAGCCTTACGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAA 372
consensus_8245#1      ATCAGCTCCTCAACTCCAACAAGCTT--AGCCTCCGCCTCACCATTTTGTTTGGATTGAA 462
consensus_8245#2      AATGAATTATTNTATTTTCTGGGCTTTTAGACCATTTATGTCCGATCAGACTTGATACTN 415
                                            ** *  *         *  *      *     **    

consensus_8245#0      GA-ATTCATCTAAACCTGTTTATTCTGTGACTGAATGAACAGGTAAACGAGACCAATCCC 742
consensus_8245#3      GA-ATTCATCTAAACCTG------------------------------------------ 389
consensus_8245#1      TA-GATGTTTCAGCATCAATAACATCG--------------------------------- 488
consensus_8245#2      TGTGATTGCCCGGGATTTGTAATGCCATCTTTTG-------------------------- 449
                           *                                                      

consensus_8245#0      CAGCAGTGTTTGTTCGAACTACATGACGCCCTGATCTTTCAGAAGGTTCTGATCCAATAT 802
consensus_8245#3      ------------------------------------------------------------
consensus_8245#1      ------------------------------------------------------------
consensus_8245#2      ------------------------------------------------------------
                                                                                  

consensus_8245#0      GTTTAACAAGAGAGCGTCCGAGACCATGTTTTCTGCCCATGTAACGCACC 852
consensus_8245#3      --------------------------------------------------
consensus_8245#1      --------------------------------------------------
consensus_8245#2      --------------------------------------------------