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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 734 fasta sequence
[TGAAAAATATGCCAGTTTATTAAAAGCTTACTTTACTCATCGTCTACAATTTACACCAGCTTTTCATCATAATCCCATACATAGAGAACTTGAAGAACATTACAAGGAAAGACTCGGTTGTTTAAGTGAAGATGCTGGTTATTTTAATGTTATCGGAAATCGTCTCATTCAAGTGATTAATAAAGCTTTATCATCTGGTAGACCGTATACTCTTAATCCAATTACTTTCACTTCTTCTATCAGTGATTTAAGTATGAGAGAACAATGTTTACATGCTTTACTACCTGGCAATGAAGTGAAGAATACTAAAATCCAGAAGAGGAAAACTACTAACGAACTTTGTAGAGTGGATGTTCTTTCCAATACTGATAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATAAGCAAAGAGATAATGAAAAATAAAGGCATTGTAAAATATCGACATAAACGTG-AACGT-ATCCTAGAGTGCATTTACGATATAAATACCGCAAGGCAA-CAATTCGTTACAGATCACGTGTTGCG-CCAG-TCGTAAAGAAGACAAA-CATATGCTGGTGAAGTAAAAGG-ATACGTGTAAATTTGATTAAATCGCACAATTTCAAAAATATTAA]
[+] EMBL CD145587 [TGAAAAATATGCCAGTTTATTAAAAGCTTACTTTACTCATCGTCTACAATTTACACCAGCTTTTCATCATAATCCCATACATAGAGAACTTGAAGAACATTACAAGGAAAGACTCGGTTGTTTAAGTGAAGATGCTGGTTATTTTAATGTTATCGGAAATCGTCTCATTCAAGTGATTAATAAAGCTTTATCATCTGGTAGACCGTATACTCTTAATCCAATTACTTTCACTTCTTCTATCAGTGATTTAAGTATGAGAGAACAATGTTTACATGCTTTACTACCTGGCAATGAAGTGAAGAATACTAAAATCCAGAAGAGGAAAACTACTAACGAACTTTGTAGAGTGGATGTTCTTTCCAATACTGATAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATAAGCAAAGAGATAATGAAAAAT AAGGCATTGTAAAATATCGACATAAACGTGAAACGT ATCCTAGAGTGCATTTACGATATAAATATTGCAGGGCAANCATTTCGNTACAGATCACGTGTTGCGCCCAG TCGTAAAGAAGACAAA CATATGCTGGTGAAGTAAAAGG ATACGTGTAAATTTGATTAAATCGCACAATTTCAAAAATATTAA]
[+] EMBL CD154199 [ ACACCAGCTTTTCATCATAATCCCATACATAGAGAACTTGAAGAACATTACAAGGAAAGACTCGGTTGTTTAAGTGAAGATGCTGGTTATTTTAATGTTATCGGAAATCGTCTCATTCAAGTGATTAATAAAGCTTTATCATCTGGTAGACCGTATACTCTTAATCCAATTACTTTTACTTCTTCTATCAGTGATTTAAGTATGAGAGAACAATGTTTACATGCTTTACTACCTGGCAATGAAGTGAAGAATACTAAAATCCAGAAGAGGAAAACTACTAACGAACTTTGTAGAGTGGATGTTCTTTCCAATACTGATAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCACGATCTACCAAATCGACCAATAAGCAAAGAGATAATGAAAAATAAAGGCACTGTAAAA ]
[+] EMBL CD180860 [ GATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATAAGCAAAGAGATAATGAAAAATAAAGGCATCGTAAAATATCGACATAAACGTG AACGTAATCCTAGAGTGCATTTACGATATAAATACCGCAAGGCAA CAATTCGTTACAGATCACGTGTTGCG CCAGTTCGTAAAGAAGAC ]
[+] EMBL CD138015 [ AAATCGACCAATAAGCAAAGAGATAATGAAAAATAAAGGCATTGTAAAATATCGACATAAACGTG AACGTAATCCTAGAGTGCATTTACGATATAAATACCGCAAGGCAA CAATTCGTTACAGATCACGTGTTGCG CCAGTTCGTAAAGAAGACAAACCATATGCTGGTGAAGTTAAAGGAATACGTG ]
consensusID : consensus_8252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence
[CTACGAGACCAAGTGGCTAAATGTCAAACATCTTAACCACTAAGCCACCGATCCACTACATGAAATAAGAGTAGATGGAACTGCGGTACTGCAACAATTTTTCCGCAGCCGTAAATTGCAATCATTGCTCTGCTTTTTTTCAGTAAATCCCCACTTTGTGAGATCCCTGTCAAGACAGTCAATTACTTCATGGAATAGTGCCATGTGTTGGTTTACCTTCCTTTAACCTTTAGAAACCAGTCACTACTAAGATTATTCGACCTGAAGAATGTAGAAAAAAGTGTCCAGTGTTGATTCAAATAAGTTTCTATACTACTTTTGACAGTTTTTTTGTTTGAACAATCGTATACATCGTTATAAAATATCATGATTACAATATTTCTTAATTTTGAGTTTCCTTACGTTTCAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCAGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATANGCAAAGAGGGTAGCCAGAATCATCTGTAA-TTAGNTTTTTTTTC]
[+] EMBL CD093643 [CTACGAGACCAAGTGGCTAAATGTCAAACATCTTAACCACTAAGCCACCGATCCACTACATGAAATAAGAGTAGATGGAACTGCGGTACTGCAACAATTTTTCCGCAGCCGTAAATTGCAATCATTGCTCTGCTTTTTTTCAGTAAATCCCCACTTTGTGAGATCCCTGTCAAGACAGTCAATTACTTCATGGAATAGTGCCATGTGTTGGTTTACCTTCCTTTAACCTTTAGAAACCAGTCACTACTAAGATTATTCGACCTGAAGAATGTAGAAAAAAGTGTCCAGTGTTGATTCAAATAAGTTTCTATACTACTTTTGACAGTTTTTTTGTTTGAACAATCGTATACATCGTTATAAAATATCATGATTACAATATTTCTTAATTTTGAGTTTCCTTACGTTTCAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCAGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATANGCAAAGAGGGTAGCCAGAATCATCTGTAA TTAGNTTTTTTT ]
[+] EMBL CD093610 [ AAATGTCAAACATCTTAACCACTAAGCCACCGATCCACTACATGAAATAAGAGTAGATGGAACTGCGGTACTGCAACAATTTTTCCGCAGCCGTAAATTGCAATCATTGCTCTGCTTTTTTTCAGTAAATCCCCACTTTGTGAGATCCCTGTCAAGACAGTCAATTACTTCATGGAATAGTGCCATGTGTTGGTTTACCTTCCTTTAACCTTTAGAAACCAGTCACTACTAAGATTATTCGACCTGAAGAATGTAGAAAAAAGTGTCCAGTGTTGATTCAAATAAGTTTCTATACTACTTTTGACAGTTTTTTTGTTTGAACAATCGTATACATCGTTATAAAATATCATGATTACAATATTTCTTAATTTTGAGTTTCCTTACGTTTCAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATAAGCAAAGAGGTTAGCCAGGATCATCTGTAATTTAGTTTTTTTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8252#0 -----TGAAAAATATGCCAGTTTATTAAAAGCTTACT---TTACTCATCG-TCTACAATT 51
consensus_8252#1 CTACGAGACCAAGTGGCTAAATGTCAAACATCTTAACCACTAAGCCACCGATCCACTACA 60
** ** ** * * ** * **** * * ** ** ** ** *
consensus_8252#0 TACACCAGCTTTTCATCATAATCCCATACATAGAGAACTT-------GAAGAACATTACA 104
consensus_8252#1 TGAAATAAGAGTAGATGGAACTGCGGTACTGCAACAATTTTTCCGCAGCCGTAAATTGCA 120
* * * * ** * * * *** * ** ** * * * *** **
consensus_8252#0 AGGAAAGACTCGGTTGTTTAAGTGAAGATGCTGGTTATTTTAATGTTATCGGAAATCGTC 164
consensus_8252#1 ATCATTGCTCTGCTTTTTTTCAGTAAATCCCCACTTTGTGAGATCCCTGTCAAGACAGTC 180
* * * * ** *** ** * ** * ** * * ***
consensus_8252#0 --TCATTCAAGTGATTAATAAAGCTTTATCATCTGGTAGACCGTATACTCTT-AATCCAA 221
consensus_8252#1 AATTACTTCATGGAATAGTGCCATGTGTTGGTTTACCTTCCTTTAACCTTTAGAAACCAG 240
* * * * ** ** * * * * * * ** ** * ** ***
consensus_8252#0 TTACTTTCAC--TTCTTCTATC--AGTGATTTAAGTATGAGAGAACAATGTTTACATG-- 275
consensus_8252#1 TCACTACTAAGATTATTCGACCTGAAGAATGTAGAAAAAAGTGTCCAGTGTTGATTCAAA 300
* *** * ** *** * * * ** ** * ** * ** **** *
consensus_8252#0 -------CTTTACTACCT--GGCAATG-----AAGTGAAGAATACTAAAATCCAGAAGAG 321
consensus_8252#1 TAAGTTTCTATACTACTTTTGACAGTTTTTTTGTTTGAACAATCGTATACATCGTTATAA 360
** ****** * * ** * **** *** ** * * * *
consensus_8252#0 GAAA--ACTACTAACGAACTTTGTAGAGTGGATGTTCTTTCCAATACTGATAGTCAGTTT 379
consensus_8252#1 AATATCATGATTACAATATTTCTTAATTTTGAGTTTCCTTACGTTTC----AGTCAGTTT 416
* * * * ** * ** ** * ** *** ** * * * *********
consensus_8252#0 ATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGT 439
consensus_8252#1 ATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGT 476
************************************************************
consensus_8252#0 GATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCC 499
consensus_8252#1 GATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCAGACAGCAGCTGACCAGTCC 536
**************************************** *******************
consensus_8252#0 ACTCATGATCTACCAAATCGACCAATAAGCAAAGAGA-TAATGAAAAATAAAGGCATTGT 558
consensus_8252#1 ACTCATGATCTACCAAATCGACCAATANGCAAAGAGGGTAGCCAGAATCATCTGTAATTA 596
*************************** ******** ** * ** * * * *
consensus_8252#0 AAAATATCGACATAAACGTGAACGTATCCTAGAGTGCATTTACGATATAAATACCGCAAG 618
consensus_8252#1 GNTTTTTTTTC------------------------------------------------- 607
* * *
consensus_8252#0 GCAACAATTCGTTACAGATCACGTGTTGCGCCAGTCGTAAAGAAGACAAACATATGCTGG 678
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 TGAAGTAAAAGGATACGTGTAAATTTGATTAAATCGCACAATTTCAAAAATATTAA 734
consensus_8252#1 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||