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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 717 fasta sequence
[GAGCCTATACAACCTTCATCGATTCAAAAGATGCTAGATGAGAACGTCCGACTTATACATAGTCTTATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGCATCCAGTACCTATGGCAGTCGGTCCTACAACAATATCTACTGTCGGGAATCCTATTATGTATCAGCAGTATCTTGTTTCTTCTGCTTCTCATGTTCCAAATAATTTACAAGTTACGCCACAAAATCATATGGCAATAGGTGGTTCTGGTCAGTTTCAACAACATGAACGTGTAGTGCAACATTCCGATGGACAAATTGCATCTGTCGATTCAAGTGGTACTGTTTCACCCAATGCAGTCGCAATGGTTTCCTCATAATTTACATGTATTAAAACAAGTTGAGGTGTTCGTACTGTTCAACTTTGTTGATTCGTTTAGACTAATTTAAACCCTGACATTCAAAAATGAATGACCCATAATTTTGAA]
[+] EMBL BG932630 [GAGCCTATACAACCTTCATCGATTCAAAAGATGCTAGATGAGAACGTCCGACTTATACATAGTCTTATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGCATCCAGTACCT ]
[+] EMBL CD138033 [ TTATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATC ]
[-] EMBL CD138057 [ TATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCTACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATCATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTT ]
[-] EMBL CD137935 [ TATGGCACATCAGAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTTTTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCAGTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCA ]
[+] EMBL CD083407 [ gCTAAACCTAATCAAATTCAAGACTCGGCAC AATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGCATCCAGTACCTATGGCAGTCGGTCCTACAACAATATCTACTGTCGGGAATCCTATTATGTATCAGCAGTATCTTGTTTCTTCTGCTTCTCATGTTCCAAATAATTTACAAGTTACGCCACAAAATCATATGGCAATAGGTGGTTCTGGTCAGTTTCAACAACATGAACGTGTAGTGCAACATTCCGATGGACAAATTGCATCTGTCGATTCAAGTGGTACTGTTTCACCCAATGCAGTCGCAATGGTTTCCTCATAATTTACATGTATTAAAACAAGTTGAGGTGTTCGTACTGTTCAACTTTGTTGATTCGTTTAGACTAATTTAAACCCTGACATTCAAAAATGAATGACCCATAATTTTGAA]
consensusID : consensus_8254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence
[ACTCTTTTTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGTCAAATATATTGATTACTTTGAACTTGGGTTTACAGATTGTTGATTGTCGATTATCAATCTCATTTTTAATATAGATCTCCATCTAAAATTCTCCCAACTATCTCCATGCA]
[+] EMBL CD166362 [ACTCTTTTTCCTTCCAGTTTGACTCAACCTAATCAAATTCAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAGTCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGTCAAATATATTGATTACTTTGAACTTGGGTTTACAGATTGTTGATTGTCGATTATCAATCTCATTTTTAATATAGATCTCCATCTAAAATTCTCCCAACTATCTCCATGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8254#0 GAGCCTATACAACCTTCATCGATTCAAAAGATGCTAGATGAGAACGTCCGACTTATACAT 60
consensus_8254#1 ------------------------------------------------------------
consensus_8254#0 AGTCTTATGGCACATCAAAGAGTTGGAGCCGTTAAAGAAGCAGTGGAATTAGAACGTGTT 120
consensus_8254#1 ------------------------------------------------------------
consensus_8254#0 TTACACCGTAATCTTATTTATTTAGCCACAATTGCTGACCGTACAGCGACCCAACATGCA 180
consensus_8254#1 ------------------------------------------------------------
consensus_8254#0 GTTGGACCAACAAGTTGTTCACACCCAATTCCTTCCAGTTTGACTCAACCTAATCAAATT 240
consensus_8254#1 --------------------ACTCTTT-TTCCTTCCAGTTTGACTCAACCTAATCAAATT 39
** * ********************************
consensus_8254#0 CAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAG 300
consensus_8254#1 CAAGACTCGGCACCAAATTATCCATTATCTGTAGTTAACGCATCATCGGATCTGTCCCAG 99
************************************************************
consensus_8254#0 TCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAGCATCCAGTA 360
consensus_8254#1 TCGTCCGTTCTTGGACAACCTCATCAAATTACAGTTAATTCGTCAGTTCAG--TCAAATA 157
*************************************************** ** * **
consensus_8254#0 CCTATGGCAGTCGGTCCTACAACAATATCTACTGTCGGGAATCCTATTATGTATCAGCAG 420
consensus_8254#1 TATTGATTACTTTGAACT-TGGGTTTACAGATTGTTG--------ATTGTCGATTATCA- 207
* * * * ** ** * *** * *** * ** * **
consensus_8254#0 TATCTTGTTTCTTCTGCTTCTCATGTTCCAAATAATTTACAAGTTACGCCACAAAATCAT 480
consensus_8254#1 -ATCTCATTTTTAATATAGATCTCCATCTAAAATTCTCCCAACTATCTCCATGCA----- 261
**** *** * * ** ** *** * *** * * *** *
consensus_8254#0 ATGGCAATAGGTGGTTCTGGTCAGTTTCAACAACATGAACGTGTAGTGCAACATTCCGAT 540
consensus_8254#1 ------------------------------------------------------------
consensus_8254#0 GGACAAATTGCATCTGTCGATTCAAGTGGTACTGTTTCACCCAATGCAGTCGCAATGGTT 600
consensus_8254#1 ------------------------------------------------------------
consensus_8254#0 TCCTCATAATTTACATGTATTAAAACAAGTTGAGGTGTTCGTACTGTTCAACTTTGTTGA 660
consensus_8254#1 ------------------------------------------------------------
consensus_8254#0 TTCGTTTAGACTAATTTAAACCCTGACATTCAAAAATGAATGACCCATAATTTTGAA 717
consensus_8254#1 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||