These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 631 fasta sequence [TGCACTTCCCAATGCTTTTATTCATTA-ATT--AT-TA-TT-A-CTATCATGTT-AAAAAGATAATGATACAGCGTTTAATGCGTAAAATTCAGGAATGTCATTTCAATTTACTTATCCTTCCTAATCGACGTGTAATGTGTTCATCTACCTCTTTAGACTGTAATAGTCTAATTATCATTAATTGTAAGCACAAATATGCG-TATCTG-ATAAGGCATCTCCAGAGAT-TCATTTAAAGCTTCAAATATCCTCTCGATTTTTACTATTCATGCTGTTTACTTAAATCTGATCAAGTTCCCTTTTATTCTATCTCTTCTTACTCCGGTATTTCAATAATTACTTTTATTCACTTCAATGTTGATTTCTGTTCAGGTAAATCGCTTTATTTAAATTTTAAGAATTTTATCCACTTACGTATTTGTTTTCCTTATATCAGTTTGGCGAGTATATCCTACTTATCTTCGATGGTATGCTCAAGCAGCTACTTATTTTTTTTTCTGTTTAAGAGGAGATTCCCATCTATATATGCAGGAAAGTGTCCACTCAGGAATTTGGTCAAACATACCAGTTCGCTGATTATTGTCATTTATTTTTTATTCTTGTCATTTATTAATTTATCACTGACAAAAAAGTATTGTGT] [+] EMBL CD078501 [TGCACTTCCCAATGCTTTTATTCATTA ATT AT TA TT A CTATCATGTT AAAAAGATAATGATACAGCGTTTAATGCGTAAAATTCAGGAATGTCATTTCAATTTACTTATCCTTCCTAATCGACGTGTAATGTGTTCATCTACCTCTTTAGACTGTAATAGTCTAATTATCATTAATTGTAAGCACAAATATGCG TATCTG ATAAGGCATCTCCAGAGAT TCATTTAAAGCTTCAAATATCCTCTCGATTTTTACTATTCATGCTGTTTACTTAAATCTGATCAAGTTCCCTTTTATTCTATCTCTTCTTACTCCGGTATTTCAATAATTACTTTTATTCACTTCAATGTTGATTTCTGTTCAGGTAAATCGCTTTATTTAAATTTTAAGAATTTTATCCACTTACGTATTTGTTTTCCTTATATCAGTTTGGCGAGTATATCCTACTTATCTTCGATGGTATGCTCAAGCAGCTACTTATTTTTTTTTCTGTTTAAGAGGAGATTCCCATCTATATATGCAGGANAGTGTCCACTCAGGAATTTGGTCAAACATACCAGTTCGCTGATTATTGNCATTTA ] [+] EMBL AA917195 [ gtttacgATTATATTTCATGTAGTTGAGCTATCATGTTCAAAAAGATAATGATACAGCGTTTAATGCGTAAAATTCAGGAATGTCATTTCAATTTACTTATCCTTCCTAATCGACGTGTAATGTGTTCATCTACCTCTTTAGACTGTAATAGTCTAATTATCATTAATTGTAAGCACAAATATGCGTTATCTGTATAAGGCATCTCCTGAGATATC TATTAAGCTTCAAtac ] [-] EMBL CD072973 [ TG ATAAGGCATCTCCAGAGAT TCATTTAAAGCTTCAAATATCCTCTCGATTTTTACTATTCATGCTGTTTACTTAAATCTGATCAAGTTCCCTTTTATTCTATCTCTTCTTACTCCGGTATTTCAATAATTACTTTTATTCACTTCAATGTTGATTTCTGTTCAGGTAAATCGCTTTATTTAAATTTTAAGAATTTTATCCACTTACGTATTTGTTTTCCTTATATCAGTTTGGCGAGTATATCCTACTTATCTTCGATGGTATGCTCAAGCAGCTACTTATTTTTTTTTCTGTTTAAGAGGAGATTCCCATCTATATATGCAGGAAAGTGTCCACTCAGGAATTTGGTCAAACATACCAGTTCGCTGATTATTGTCATTTATTTTTTATTCTTGTCATTTATTAATTTATCACTGACAAAAAAGTATTGTGT] [-] EMBL AA999411 [ ACTCCGGTATTTCAATAATCACTCTTATTCACTTCAATGTTGATTTCTGTTCAGGTAAATCGCTTTATTTAAATTTTAAGAATTTTATCCACTTACGTATTTGTTTACCTTATATCAGTTTGGCGAGTATATCCTACTTATCTTCGATGGTATGCTCAAGCAGCTACTTATTTTTTTTTCTGTTTAAGAGGAGATTCCCATCTATATATGCAGGAAAGTGTCCACTCAGGAATTTGATCAAACATACCAGTTCGCTGATTATTGTCATTTATTTTTTATTCTTGTCATTTATTAATTTATCACTGACAAAAAAGTATTGTGT] consensusID : consensus_8256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [GTTACTTGTACCCGGATCTATTAATCAGGACCTTCAATGTGATGATGCTTTCTAAATTGTTTTTTGCGAGGTTTGTTGCATCTTGTTTTCATTGTTTTTTAGTTTAGTTAGTTTTATTCTGATTTCTTTGGAACTCCTGTTTTCGACTTATTTTTTCGATAATTTTCACTTGTTTAAGGTGTTTTTCTATTTAACTTTTATTCACTTCAATGTTGATTTCTGTTCAGGTAAATCGCTTTATTTAAATTTTAAGAATTTTATCCACTTACGTATTTGTTTTCCTTATATCAGTTTGGCGAGTATATCCTACTTATCTTCGATGGTATGCTCAAGCAGCTACTTATTTTTTTTTCTGTTTAAGAGGAGATTCCCATCTATATATGCAGGAAAGTGTCCACTCAGGAATTTGGTCAAACATACCAGTTCGCTGATTATTGTCATTTATTTTTTATTCTTGNCATTTATTAATTTATCACTGACAAAAAAGTATTGTG] [+] EMBL CD079170 [GTTACTTGTACCCGGATCTATTAATCAGGACCTTCAATGTGATGATGCTTTCTAAATTGTTTTTTGCGAGGTTTGTTGCATCTTGTTTTCATTGTTTTTTAGTTTAGTTAGTTTTATTCTGATTTCTTTGGAACTCCTGTTTTCGACTTATTTTTTCGATAATTTTCACTTGTTTAAGGTGTTTTTCTATTTAACTTTTATTCACTTCAATGTTGATTTCTGTTCAGGTAAATCGCTTTATTTAAATTTTAAGAATTTTATCCACTTACGTATTTGTTTTCCTTATATCAGTTTGGCGAGTATATCCTACTTATCTTCGATGGTATGCTCAAGCAGCTACTTATTTTTTTTTCTGTTTAAGAGGAGATTCCCATCTATATATGCAGGAAAGTGTCCACTCAGGAATTTGGTCAAACATACCAGTTCGCTGATTATTGTCATTTATTTTTTATTCTTGNCATTTATTAATTTATCACTGACAAAAAAGTATTGTG] consensusID : consensus_8256#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [ATGTGATGATGCTTTCTAAATTGTTTTTTGCGAAGGTTGTTGCATCTTGTTTTCATTGTTTTTTTGTTTAGTTAGGTTTATTCTGATTTCTTTGGAACTCCTGTTTTCGACTTATTTTTTCGATAATTTTCACTTGTTTAAGGTGTTTTTCTATTTAACTTTGTTTACTTATATCTGATTTGTTGGTTACTGTATATTGCTTCTATTTAAATTATTTTTAATTCCATCGAATGTATTCACTGCACTATTTCTT] [+] EMBL CD066451 [ATGTGATGATGCTTTCTAAATTGTTTTTTGCGAAGGTTGTTGCATCTTGTTTTCATTGTTTTTTTGTTTAGTTAGGTTTATTCTGATTTCTTTGGAACTCCTGTTTTCGACTTATTTTTTCGATAATTTTCACTTGTTTAAGGTGTTTTTCTATTTAACTTTGTTTACTTATATCTGATTTGTTGGTTACTGTATATTGCTTCTATTTAAATTATTTTTAATTCCATCGAATGTATTCACTGCACTATTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8256#1 ------------------------------------------------------------ consensus_8256#2 ------------------------------------------------------------ consensus_8256#0 TGCACTTCCCAATGCTTTTATTCATTAATTATTATTACTATCATGTTAAAAAGATAATGA 60 consensus_8256#1 ------------------------------------------------------------ consensus_8256#2 ------------------------------------------------------------ consensus_8256#0 TACAGCGTTTAATGCGTAAAATTCAGGAATGTCATTTCAATTTACTTATCCTTCCTAATC 120 consensus_8256#1 ---------------------------------------GTTACTTGTACCCGGATCTAT 21 consensus_8256#2 ------------------------------------------------------------ consensus_8256#0 GACGTGTAATGTGTTCATCTACCTCTTTAGACTGTAATAGTCTAATTATCATTAATTGTA 180 consensus_8256#1 TAATCAGGACCTTCAATGTGATGATGCTTTCTAAATTGTTTTTTGCGAGGTTTGTTGCAT 81 consensus_8256#2 ---------------ATGTGATGATGCTTTCTAAATTGTTTTTTGCGAAGGTTGTTGCAT 45 consensus_8256#0 AGCACAAATATGCGTATCTGATAAGGCATCTCCAGAGATTCATT-TAAAGCTTCAAATAT 239 ** **** * ** * * ** ** * * ** ** consensus_8256#1 CTT----GTTTTCATTGTTTTT-TAGTTTAGTTAGTTTTATTCTGATTTCTTTGGAACTC 136 consensus_8256#2 CTT----GTTTTCATTGTTTTT-TTGTTTAGTTAGGTTTATTCTGATTTCTTTGGAACTC 100 consensus_8256#0 CCTCTCGATTTTTACTATTCATGCTGTTTACTTAAATCTGATCAAGTTCCCTTTTATTCT 299 * * **** * * ** * ***** *** * * ** ** * ** * consensus_8256#1 --CTGTTTTCGACTTATTTTTTCGATAATT---TTCACTTGTTT-AAGGTGTTTTTCTAT 190 consensus_8256#2 --CTGTTTTCGACTTATTTTTTCGATAATT---TTCACTTGTTT-AAGGTGTTTTTCTAT 154 consensus_8256#0 ATCTCTTCTTACTCCGGTATTTCAATAATTACTTTTATTCACTTCAATGTTGATTTCTGT 359 ** ** * * **** ****** ** * * ** ** ** ***** * consensus_8256#1 TTAACT---TTTATTCACTTCAATGTTGAT--TTCTGTTCAG--GTAAATCGCTT-TATT 242 consensus_8256#2 TTAACT---TT-GTTTACTTATATCTGATT--TGTTGGTTACT-GTATATTGCTTCTATT 207 consensus_8256#0 TCAGGTAAATCGCTTTATTTAAATTTTAAGAATTTTATCCACTTACGTATTTGTTTTCCT 419 * * * * ** * ** ** * * * * ** ** * * consensus_8256#1 TAAATT-TTAA-------------GAATTTTATCCACTTACGTATTTG--TTTT-CCTTA 285 consensus_8256#2 TAAATTATTTT-------------TAATTCCATCGA---ATGTATTCA--CTGC-ACT-A 247 consensus_8256#0 TATATCAGTTTGGCGAGTATATCCTACTTATCTTCGATGGTATGCTCAAGCAGCTACTTA 479 ** ** * * ** * * * ** * consensus_8256#1 TATCAGTTTGGCGAGTATATCCTACTTATCTTCGATGGTATGCTCAAGCAGCTACTTATT 345 consensus_8256#2 TTTCTT------------------------------------------------------ 253 consensus_8256#0 TTTTTTTTTCTGTTTAAGAGGAGATTCCCATCTATATATGCAGGAAAGTGTCCACTCAGG 539 * * consensus_8256#1 TTTTTTTCTGTTTAAGAGGAGATTCCCATCTATATATGCAGGAAAGTGTCCACTCAGGAA 405 consensus_8256#2 ------------------------------------------------------------ consensus_8256#0 AATTTGGTCAAACATACCAGTTCGCTGATTATTGTCATTTATTTTTTATTCTTGTCATTT 599 consensus_8256#1 TTTGGTCAAACATACCAGTTCGCTGATTATTGTCATTTATTTTTTATTCTTGNCATTTAT 465 consensus_8256#2 ------------------------------------------------------------ consensus_8256#0 ATTAATTTATCACTGACAAAAAAGTATTGTGT---------------------------- 631 consensus_8256#1 TAATTTATCACTGACAAAAAAGTATTGTG 494 consensus_8256#2 ----------------------------- consensus_8256#0 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||