cluster # 8258

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Schistosoma mansoni
cluster # 8258 cluster # 8258 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8258#0 length = 879 sequences # 5

consensus_8258#1 length = 335 sequences # 1

consensusID : consensus_8258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 879
fasta sequence

                              [CAGTTACTAGAAAAATTAGAACTTCGTGATAATTGTCTCAAGTCAATACCAGATTCTTTCGCTGATCTTATTCATTTGGAGTTTCTTGATCTTGGAGCCAATGAGTTTCAAGAGTTGTCTCCCGTGATTGGTCAGCTCTCCCAATTGAGCGAATTATGGATAGATGATAATGAATTGAGATCATTACCTAAAGAGTTGGGAAATCTTGGGAATTTACAGCAGTTGGATTTATCAGAAAACCTTATTTCTACTCTGCCTGAAAGCATCTCGGGATTAGTTTCATTATCGGACTTAGATTTATCACAAAATAGCATAACACATTTACCAAATGGCTTAGGTGATTTAGACAAGTTGATCATTTTAAAACTCAACCAAAATCGACTGCTAACAGTAACACCAACTATAGGAAACTGTTCCAGTTTACAAGAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGCAATTTAGTCTCCATGTTTCATCTGAATGTTGATCAAAATCAACTGACTGAGTTACCCTCTGAGATTGGTCAATGTACATCACTCAATATTTTGTCTCTTCGAGAAAATAATTTGCATAGATTACCCGATGAAATTGGTAATTGTACACGTTTACGAGTTTTGGATGTTTCTGGGAATAGACTTGATCGTTTACCATTCAGTTTATCAAGATGCTCATTGACAGCTTTATGGCTTTCACAGAATCAATCTCAACCAGTTATTACGTTGCAAAGAGATGTAGATCCTGTTACACAAGAACAGTATCT-CACATGTTATTTACTACCACAGGATCAACTAGACTCACGTGTTGAAACTGATCCAACTATGTCACCATCTGAATTAGATAGTTTTTCTGCTTCATTA]

[+] EMBL CD169347             [CAGTTACTAGAAAAATTAGAACTTCGTGATAATTGTCTCAAGTCAATACCAGATTCTTTCGCTGATCTTATTCATTTGGAGTTTCTTGATCTTGGAGCCAATGAGTTTCAAGAGTTGTCTCCCGTGATTGGTCAGCTCTCCCAATTGAGCGAATTATGGATAGATGATAATGAATTGAGATCATTACCTAAAGAGTTGGGAAATCTTGGGAATTTACAGCAGTTGGATTTATCAGAAAACCTTATTTCTACTCTGCCTGAAAGCATCTCGGGATTAGTTTCATTATCGGACTTAGATTTATCACAAAATAGCATAACACATTTACCAAATGGCTTAGGTGATTTAGACAAGTTGATCATTTTAAAACTCAACCAAAATCGACTGCTAACAGTAACACCAACTATAGGAAACTGTTCCAGTTTACAAGAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGC                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD169346             [CAGTTACTAGAAAAATTAGAACTTCGTGATAATTGTCTCAAGTCAATACCAGATTCTTTCGCTGATCTTATTCATTTGGAGTTTCTTGATCTTGGAGCCAATGAGTTTCAAGAGTTGTCTCCCGTGATTGGTCAGCTCTCCCAATTGAGCGAATTATGGATAGATGATAATGAATTGAGATCATTACCTAAAGAGTTGGGAAATCTTGGGAATTTACAGCAGTTGGATTTATCAGAAAACCTTATTTCTACTCTGCCTGAAAGCATCTCGGGATTAGTTTCATTATCGGACTTAGATTTATCACAAAATAGCATAACACATTTACCAAATGGCTTAGGTGATTTAGACAAGTTGATCATTTTAAAACTCAACCAAAATCGACTGCTAACAGTAACACCAACTATAGGAAACTGTTCCAGTTTACAAGAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGC                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD170687             [                                                                                                                                           CCCAATTGAGCGAATTATGGATAGATGATAATGAATTGAGATCATTACCTAAAGAGTTGGGAAATCTTGGGAATTTACAGCAGTTGGATTTATCAGAAAACCTTATTTCTACTCTGCCTGAAAGCATCTCGGGATTAGTTTCATTATCGGACTTAAATTTATCACAAAATAGCATAACACATTTACCAAATGGCTTAGGTGATTTAGACAAGTTGATCATTTTAAAACTCAACCAAAATCGACTGCTAACAGTAACACCAACTATAGGAAACTGTTCCAGTTTACAAGAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGCAATTTAGTCTCCATGTTTCATCTGAATGTTGATCAAAATCAACTGACTGAGTTACCCTCTGAGATTGGTCAATGTACATCACTCAA                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD170332             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATCAAAATCAACTGACTGAGTTACCCTCTGAGATTGGTCAATGTACATCACTCAATATTTTGTCTCTTCGAGAAAATAATTTGCATAGATTACCCGATGAAATTGGTAATTGTACACGTTTACGAGTTTTGGATGTTTCTGGGAATAGACTTGATCGTTTACCATTCAGTTTATCAAGATGCTCATTGACAGCTTTATGGCTTTCACAGAATCAATCTCAACCAGTTATTACGTTGCAAAGAGATGTAGATCCTGTTACACAAGAACAGTATCT CACATGTTATTTACTACCACAGGATCAACTAGACTCACGTGTTGAAACTGATCCAACTATGTCACCATCTGAATTAGATAGTTTTTCTGCTTCATTA]
[-] EMBL CD169996             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTACGAGTTTTGGATGTTTCTGGGAATAGACTTGATCGTTTACCATTCGGTTTATCAAGATGCTCATTGACAGCTTTATGGCTTTCACAGAATCAATCTCAACCAGTTATTACGTTGCAAAGAGATGTAGATCCTGTTACACAAGAGGTGTATCTACACc                                                                                             ]




>consensus_8258#0
CAGTTACTAGAAAAATTAGAACTTCGTGATAATTGTCTCAAGTCAATACCAGATTCTTTC
GCTGATCTTATTCATTTGGAGTTTCTTGATCTTGGAGCCAATGAGTTTCAAGAGTTGTCT
CCCGTGATTGGTCAGCTCTCCCAATTGAGCGAATTATGGATAGATGATAATGAATTGAGA
TCATTACCTAAAGAGTTGGGAAATCTTGGGAATTTACAGCAGTTGGATTTATCAGAAAAC
CTTATTTCTACTCTGCCTGAAAGCATCTCGGGATTAGTTTCATTATCGGACTTAGATTTA
TCACAAAATAGCATAACACATTTACCAAATGGCTTAGGTGATTTAGACAAGTTGATCATT
TTAAAACTCAACCAAAATCGACTGCTAACAGTAACACCAACTATAGGAAACTGTTCCAGT
TTACAAGAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGCAAT
TTAGTCTCCATGTTTCATCTGAATGTTGATCAAAATCAACTGACTGAGTTACCCTCTGAG
ATTGGTCAATGTACATCACTCAATATTTTGTCTCTTCGAGAAAATAATTTGCATAGATTA
CCCGATGAAATTGGTAATTGTACACGTTTACGAGTTTTGGATGTTTCTGGGAATAGACTT
GATCGTTTACCATTCAGTTTATCAAGATGCTCATTGACAGCTTTATGGCTTTCACAGAAT
CAATCTCAACCAGTTATTACGTTGCAAAGAGATGTAGATCCTGTTACACAAGAACAGTAT
CTCACATGTTATTTACTACCACAGGATCAACTAGACTCACGTGTTGAAACTGATCCAACT
ATGTCACCATCTGAATTAGATAGTTTTTCTGCTTCATTA

consensusID : consensus_8258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 335
fasta sequence

                              [ACCACTAAACGATGTGTAAAAGTGATATTTCTAAATTGCTCACTGCGAGATAGATATTACTTTTATTGTCGTAATGCAGATCTTTCTATTTAACAAATTAAATGCTGTTCCAGTTTACAAGAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGCAATTTAGTCTCCATGTTTCATCTGAATGTTGATCAAAATCAACTGACTGAGTTACCCTCTGAGATTGGTCAATGTACATCACTCAATATTTTGTCTCTTCGAGAAAATAATTTGCATAGATTACCCGATGAAATTGGTAATTGTACACGTTTACGAGTTTTGGA]

[+] EMBL CD197424             [ACCACTAAACGATGTGTAAAAGTGATATTTCTAAATTGCTCACTGCGAGATAGATATTACTTTTATTGTCGTAATGCAGATCTTTCTATTTAACAAATTAAATGCTGTTCCAGTTTACAAGAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGCAATTTAGTCTCCATGTTTCATCTGAATGTTGATCAAAATCAACTGACTGAGTTACCCTCTGAGATTGGTCAATGTACATCACTCAATATTTTGTCTCTTCGAGAAAATAATTTGCATAGATTACCCGATGAAATTGGTAATTGTACACGTTTACGAGTTTTGGA]




>consensus_8258#1
ACCACTAAACGATGTGTAAAAGTGATATTTCTAAATTGCTCACTGCGAGATAGATATTAC
TTTTATTGTCGTAATGCAGATCTTTCTATTTAACAAATTAAATGCTGTTCCAGTTTACAA
GAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGCAATTTAGTC
TCCATGTTTCATCTGAATGTTGATCAAAATCAACTGACTGAGTTACCCTCTGAGATTGGT
CAATGTACATCACTCAATATTTTGTCTCTTCGAGAAAATAATTTGCATAGATTACCCGAT
GAAATTGGTAATTGTACACGTTTACGAGTTTTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8258#0      CAGTTACTAGAAAAATTAGAACTTCGTGATAATTGTCTCAAGTCAATACCAGATTCTTTC 60
consensus_8258#1      ------------------------------------------------------------
                                                                                  

consensus_8258#0      GCTGATCTTATTCATTTGGAGTTTCTTGATCTTGGAGCCAATGAGTTTCAAGAGTTGTCT 120
consensus_8258#1      ------------------------------------------------------------
                                                                                  

consensus_8258#0      CCCGTGATTGGTCAGCTCTCCCAATTGAGCGAATTATGGATAGATGATAATGAATTGAGA 180
consensus_8258#1      ------------------------------------------------------------
                                                                                  

consensus_8258#0      TCATTACCTAAAGAGTTGGGAAATCTTGGGAATTTACAGCAGTTGGATTTATCAGAAAAC 240
consensus_8258#1      ------------------------------------------------------------
                                                                                  

consensus_8258#0      CTTATTTCTACTCTGCCTGAAAGCATCTCGGGATTAGTTTCATTATCGGACTTAGATTTA 300
consensus_8258#1      -----------------------------------------------------------A 1
                                                                                 *

consensus_8258#0      TCACAAAATAGCATAACACATTTACCAAATGGCTTAGGTGATTTAGACAAGTTGATCATT 360
consensus_8258#1      CCACTAAACGATGTGTAAAAGTGAT---ATTTCTAAATTGCTCACTGCGAGATAGATATT 58
                       *** ***     *   * * * *    **  ** *  ** *     * ** *    ***

consensus_8258#0      TTAAAACTCAACCAAAATCGACTGCTAACAGTAACACCAACTATAGGAAACTGTTCCAGT 420
consensus_8258#1      ACTTTTATTGTCGTAATGCAGATCTTTCTATTTA-ACAAATTAAATG---CTGTTCCAGT 114
                             *   *  **  *   *  *   * * * ** ** ** * *   **********

consensus_8258#0      TTACAAGAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGCAAT 480
consensus_8258#1      TTACAAGAATTATATTTAACTGAAAATTTTCTTTCTAAACTCCCGTCTTCTATTGGCAAT 174
                      ************************************************************

consensus_8258#0      TTAGTCTCCATGTTTCATCTGAATGTTGATCAAAATCAACTGACTGAGTTACCCTCTGAG 540
consensus_8258#1      TTAGTCTCCATGTTTCATCTGAATGTTGATCAAAATCAACTGACTGAGTTACCCTCTGAG 234
                      ************************************************************

consensus_8258#0      ATTGGTCAATGTACATCACTCAATATTTTGTCTCTTCGAGAAAATAATTTGCATAGATTA 600
consensus_8258#1      ATTGGTCAATGTACATCACTCAATATTTTGTCTCTTCGAGAAAATAATTTGCATAGATTA 294
                      ************************************************************

consensus_8258#0      CCCGATGAAATTGGTAATTGTACACGTTTACGAGTTTTGGATGTTTCTGGGAATAGACTT 660
consensus_8258#1      CCCGATGAAATTGGTAATTGTACACGTTTACGAGTTTTGGA------------------- 335
                      *****************************************                   

consensus_8258#0      GATCGTTTACCATTCAGTTTATCAAGATGCTCATTGACAGCTTTATGGCTTTCACAGAAT 720
consensus_8258#1      ------------------------------------------------------------
                                                                                  

consensus_8258#0      CAATCTCAACCAGTTATTACGTTGCAAAGAGATGTAGATCCTGTTACACAAGAACAGTAT 780
consensus_8258#1      ------------------------------------------------------------
                                                                                  

consensus_8258#0      CTCACATGTTATTTACTACCACAGGATCAACTAGACTCACGTGTTGAAACTGATCCAACT 840
consensus_8258#1      ------------------------------------------------------------
                                                                                  

consensus_8258#0      ATGTCACCATCTGAATTAGATAGTTTTTCTGCTTCATTA 879
consensus_8258#1      ---------------------------------------