These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1295 fasta sequence [CGGATAGTACTGATAGTAGTAATTCAAGGATGGTATATCAACCGTCTATTTTCAGTTTAACAAATTGTCTACAGCTGTTTTCATCGTCCTGTTGGCGATGTCTCACAATCATTACGGACTGGCCATGTTTACCTTCCGAAAACATGTTTTTCCCAACACCATATACATTTATTCCTTCAAGACAACTTCACTCATCAACTGATCATCCATCATTTCAAACCATCTATTATACAAGTGACTTAGTTTCAAATAATTATTTAATGAATCATCAGTGTTTAGGTGCAACACCTGAACAAATACGTGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGTTCAGAATGAACACTTATATATTGATTATT-GGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTATTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATTTCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATATCATGGTCAGCGTCTACCATTTATCCATGTGGGGTTGTAGTCAAGCATATGCAAGGTTTATTTCGTTCTGTTGGAATTAATAACTGTGCTGAACCAGGCAATCGACTTCATTCACGATTTTATTTTATATTCGACAATCCAAAATACATAAGTAGTATGCTGTTGTGTCTTTCTTCATTTAGTGTATTGTATCAATGTTTTTGTTCATATTGGGTTTGTGAATGGTATAAATTAATCGGTTTAATAATTGATGCCTTATTTTGTTTTCTTAATTTATACTTACATTCTCGTAACTCAATCCTCGTACATTTTGTTTATTCTCAAGAGAAAGGGTGGAGTTTATCAAATTATTTAGGTATTTCTTCTTTACGGTTATTTTCTTCTAGTAGTTCATCTACAACTTCTATTTCCAATTAGATTCTATTTGTCTTTCATTCAATCGGTTTTGTTCATGATTATCACTTTTATGACAATCATGAATTGTTCATAATCTGAAACTATTTCTACTTAAGTCTATTCTCATTTCACTTTTAATTGTTTTTGTTTTACTTAATCCATTATATCTCTTATTGTTTACTCTCAAGGTACTTTTTGCTTGTATAATGATATGAGGAGTATGTTTTGTGAACATATGGTTACTACACTCCATACTTACGTTTTTTATTCTTTTCTTCAATAAAATAATAAATAAAATTT] [+] EMBL CD081899 [CGGATAGTACTGATAGTAGTAATTCAAGGATGGTATATCAACCGTCTATTTTCAGTTTAACAAATTGTCTACAGCTGTTTTCATCGTCCTGTTGGCGATGTCTCACAATCATTACGGACTGGCCATGTTTACCTTCCGAAAACATGTTTTTCCCAACACCATATACATTTATTCCTTCAAGACAACTTCACTCATCAACTGATCATCCATCATTTCAAACCATCTATTATACAAGTGACTTAGTTTCAAATAATTATTTAATGAATCATCAGTGTTTAGGTGCAACACCTGAACAAATACGTGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGTTCAGAATGAACACTTATATATTGATTATTNGGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTATTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATTTCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATATCATGGTCAGCGTC ] [+] EMBL AI975658 [ TGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGTTCAGAATGAACACTTATATATTGATTATT GGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTATTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATTTCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATATCATGGTCAGCGTCTACCATTTATCCATGTGGGGTTGTAGTCAAGCATATGCAAGGTTTATTTCGTTCTGTTGGAATTAATAACTGTGCTGAACCAGGCAATCGACTTCATTCACGATTNTATTTTATATTCGACAATCCAAAATACATAAGTAGTATGCTGGTGTGTCTNTCTTCATTTAGTGTAT ] [+] EMBL AW017267 [ TGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGTTCAGAATGAACACTTATATATTGATTATT GGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTATTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATTTCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATATCATGGTCAGCGTCTACCATTTATCCATGTGGGGTTGTAGTCAAGCATATGCAAGGTTTATTTCGTTCTGTTGGAATTAATAACTGTGCTGAACCAGGCAATCGACTTCATTCACGATTTTATTTTATATTCGACAATCCAAAATACATAAGTAGTATGCTGTTGTGTCT ] [-] EMBL CD075601 [ CTTCATTCACGATTTTATTTTATA TCGACAATCCAAAATACATAAGTAGTATGCTGTTGTGTCTTTCTTCATTTAGTGTATTGTATCAATGTTTTTGTTCATATTGGGTTTGTGAATGGTATAAATTAATCGGTTTAATAATTGATGCCTTATTTTGTTTTCTTAATTTATACTTACATTCTCGTAACTCAATCCTCGTACATTTTGTTTATTCTCAAGAGAAAGGGTGGAGTTTATCAAATTATTTAGGTATTTCTTCTTTACGGTTATTTTCTTCTAGTAGTTCATCTACAACTTCTATTTCCAATTAGATTCTATTTGTCTTTCATTCAATCGGTTTTGTTCATGATTATCACTTTTATGACAATCATGAATTGTTCATAATCTGAAACTATTTCTACTTAAGTCTATTCTCATTTCACTTTTAATTGTTTTTGTTTTACTTAATCCATTATATCTCTTATTGTTTACTCTCAAGGTACTTTTTGCTTGTATAATGATATGAGGAGTATGTTTTGTGAACATATGGTTACTACACTCCATACTTACGTTTTTTATTCTTTTCTTCAATAAAATAATAAATAAAATTT] [-] EMBL CD066519 [ AATCCAAAATACATAAGTAGTATGCTGTTGTGTCTTTCTTCATTTAGTGTATTGTATCAATGTTTTTGTTCATATTGGGTTTGTGAATGGTATAAATTAATCGGTTTAATAATTGATGCCTTATTTTGTTTTCTTAATTTATACTTACATTCTCGTAACTCAATCCTCGTACATTTTGTTTATTCTCAAGAGAAAGGGTGGAGTTTATCAAATTATTTAGGTATTTCTTCTCTACGGTTATTTTCTTCTAGTAGTTC ] consensusID : consensus_8263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [CTCGCGGCCAGAATTCGGCACGAGGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGGTTCAGAATGAACAC] [+] EMBL CD078185 [CTCGCGGCCAGAATTCGGCACGAGGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGGTTCAGAATGAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8263#0 CGGATAGTACTGATAGTAGTAATTCAAGGATGGTATATCAACCGTCTATTTTCAGTTTAA 60 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CAAATTGTCTACAGCTGTTTTCATCGTCCTGTTGGCGATGTCTCACAATCATTACGGACT 120 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 GGCCATGTTTACCTTCCGAAAACATGTTTTTCCCAACACCATATACATTTATTCCTTCAA 180 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 GACAACTTCACTCATCAACTGATCATCCATCATTTCAAACCATCTATTATACAAGTGACT 240 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TAGTTTCAAATAATTATTTAATGAATCATCAGTGTTTAGGTGCAACACCTGAACAAATAC 300 consensus_8263#1 -----------------------------------CTCGCGGCCAGAATTCGGCACGAG- 24 * * ** * * * ** consensus_8263#0 GTGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTG 360 consensus_8263#1 --GAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTG 82 ********************************************************** consensus_8263#0 GTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTG-TTCAGAATGAA 419 consensus_8263#1 GTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGGTTCAGAATGAA 142 ************************************************ *********** consensus_8263#0 CACTTATATATTGATTATTGGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTA 479 consensus_8263#1 CAC--------------------------------------------------------- 145 *** consensus_8263#0 TTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATT 539 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATA 599 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TCATGGTCAGCGTCTACCATTTATCCATGTGGGGTTGTAGTCAAGCATATGCAAGGTTTA 659 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TTTCGTTCTGTTGGAATTAATAACTGTGCTGAACCAGGCAATCGACTTCATTCACGATTT 719 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TATTTTATATTCGACAATCCAAAATACATAAGTAGTATGCTGTTGTGTCTTTCTTCATTT 779 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 AGTGTATTGTATCAATGTTTTTGTTCATATTGGGTTTGTGAATGGTATAAATTAATCGGT 839 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TTAATAATTGATGCCTTATTTTGTTTTCTTAATTTATACTTACATTCTCGTAACTCAATC 899 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CTCGTACATTTTGTTTATTCTCAAGAGAAAGGGTGGAGTTTATCAAATTATTTAGGTATT 959 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TCTTCTTTACGGTTATTTTCTTCTAGTAGTTCATCTACAACTTCTATTTCCAATTAGATT 1019 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 CTATTTGTCTTTCATTCAATCGGTTTTGTTCATGATTATCACTTTTATGACAATCATGAA 1079 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TTGTTCATAATCTGAAACTATTTCTACTTAAGTCTATTCTCATTTCACTTTTAATTGTTT 1139 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TTGTTTTACTTAATCCATTATATCTCTTATTGTTTACTCTCAAGGTACTTTTTGCTTGTA 1199 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TAATGATATGAGGAGTATGTTTTGTGAACATATGGTTACTACACTCCATACTTACGTTTT 1259 consensus_8263#1 ------------------------------------------------------------ consensus_8263#0 TTATTCTTTTCTTCAATAAAATAATAAATAAAATTT 1295 consensus_8263#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||