cluster # 8263

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8263 cluster # 8263 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8263#0 length = 1295 sequences # 5

consensus_8263#1 length = 145 sequences # 1

consensusID : consensus_8263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1295
fasta sequence

                              [CGGATAGTACTGATAGTAGTAATTCAAGGATGGTATATCAACCGTCTATTTTCAGTTTAACAAATTGTCTACAGCTGTTTTCATCGTCCTGTTGGCGATGTCTCACAATCATTACGGACTGGCCATGTTTACCTTCCGAAAACATGTTTTTCCCAACACCATATACATTTATTCCTTCAAGACAACTTCACTCATCAACTGATCATCCATCATTTCAAACCATCTATTATACAAGTGACTTAGTTTCAAATAATTATTTAATGAATCATCAGTGTTTAGGTGCAACACCTGAACAAATACGTGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGTTCAGAATGAACACTTATATATTGATTATT-GGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTATTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATTTCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATATCATGGTCAGCGTCTACCATTTATCCATGTGGGGTTGTAGTCAAGCATATGCAAGGTTTATTTCGTTCTGTTGGAATTAATAACTGTGCTGAACCAGGCAATCGACTTCATTCACGATTTTATTTTATATTCGACAATCCAAAATACATAAGTAGTATGCTGTTGTGTCTTTCTTCATTTAGTGTATTGTATCAATGTTTTTGTTCATATTGGGTTTGTGAATGGTATAAATTAATCGGTTTAATAATTGATGCCTTATTTTGTTTTCTTAATTTATACTTACATTCTCGTAACTCAATCCTCGTACATTTTGTTTATTCTCAAGAGAAAGGGTGGAGTTTATCAAATTATTTAGGTATTTCTTCTTTACGGTTATTTTCTTCTAGTAGTTCATCTACAACTTCTATTTCCAATTAGATTCTATTTGTCTTTCATTCAATCGGTTTTGTTCATGATTATCACTTTTATGACAATCATGAATTGTTCATAATCTGAAACTATTTCTACTTAAGTCTATTCTCATTTCACTTTTAATTGTTTTTGTTTTACTTAATCCATTATATCTCTTATTGTTTACTCTCAAGGTACTTTTTGCTTGTATAATGATATGAGGAGTATGTTTTGTGAACATATGGTTACTACACTCCATACTTACGTTTTTTATTCTTTTCTTCAATAAAATAATAAATAAAATTT]

[+] EMBL CD081899             [CGGATAGTACTGATAGTAGTAATTCAAGGATGGTATATCAACCGTCTATTTTCAGTTTAACAAATTGTCTACAGCTGTTTTCATCGTCCTGTTGGCGATGTCTCACAATCATTACGGACTGGCCATGTTTACCTTCCGAAAACATGTTTTTCCCAACACCATATACATTTATTCCTTCAAGACAACTTCACTCATCAACTGATCATCCATCATTTCAAACCATCTATTATACAAGTGACTTAGTTTCAAATAATTATTTAATGAATCATCAGTGTTTAGGTGCAACACCTGAACAAATACGTGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGTTCAGAATGAACACTTATATATTGATTATTNGGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTATTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATTTCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATATCATGGTCAGCGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AI975658             [                                                                                                                                                                                                                                                                                                                                     TGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGTTCAGAATGAACACTTATATATTGATTATT GGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTATTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATTTCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATATCATGGTCAGCGTCTACCATTTATCCATGTGGGGTTGTAGTCAAGCATATGCAAGGTTTATTTCGTTCTGTTGGAATTAATAACTGTGCTGAACCAGGCAATCGACTTCATTCACGATTNTATTTTATATTCGACAATCCAAAATACATAAGTAGTATGCTGGTGTGTCTNTCTTCATTTAGTGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AW017267             [                                                                                                                                                                                                                                                                                                                                     TGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGTTCAGAATGAACACTTATATATTGATTATT GGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTATTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATTTCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATATCATGGTCAGCGTCTACCATTTATCCATGTGGGGTTGTAGTCAAGCATATGCAAGGTTTATTTCGTTCTGTTGGAATTAATAACTGTGCTGAACCAGGCAATCGACTTCATTCACGATTTTATTTTATATTCGACAATCCAAAATACATAAGTAGTATGCTGTTGTGTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD075601             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CTTCATTCACGATTTTATTTTATA TCGACAATCCAAAATACATAAGTAGTATGCTGTTGTGTCTTTCTTCATTTAGTGTATTGTATCAATGTTTTTGTTCATATTGGGTTTGTGAATGGTATAAATTAATCGGTTTAATAATTGATGCCTTATTTTGTTTTCTTAATTTATACTTACATTCTCGTAACTCAATCCTCGTACATTTTGTTTATTCTCAAGAGAAAGGGTGGAGTTTATCAAATTATTTAGGTATTTCTTCTTTACGGTTATTTTCTTCTAGTAGTTCATCTACAACTTCTATTTCCAATTAGATTCTATTTGTCTTTCATTCAATCGGTTTTGTTCATGATTATCACTTTTATGACAATCATGAATTGTTCATAATCTGAAACTATTTCTACTTAAGTCTATTCTCATTTCACTTTTAATTGTTTTTGTTTTACTTAATCCATTATATCTCTTATTGTTTACTCTCAAGGTACTTTTTGCTTGTATAATGATATGAGGAGTATGTTTTGTGAACATATGGTTACTACACTCCATACTTACGTTTTTTATTCTTTTCTTCAATAAAATAATAAATAAAATTT]
[-] EMBL CD066519             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AATCCAAAATACATAAGTAGTATGCTGTTGTGTCTTTCTTCATTTAGTGTATTGTATCAATGTTTTTGTTCATATTGGGTTTGTGAATGGTATAAATTAATCGGTTTAATAATTGATGCCTTATTTTGTTTTCTTAATTTATACTTACATTCTCGTAACTCAATCCTCGTACATTTTGTTTATTCTCAAGAGAAAGGGTGGAGTTTATCAAATTATTTAGGTATTTCTTCTCTACGGTTATTTTCTTCTAGTAGTTC                                                                                                                                                                                                                                                                                                                ]




>consensus_8263#0
CGGATAGTACTGATAGTAGTAATTCAAGGATGGTATATCAACCGTCTATTTTCAGTTTAA
CAAATTGTCTACAGCTGTTTTCATCGTCCTGTTGGCGATGTCTCACAATCATTACGGACT
GGCCATGTTTACCTTCCGAAAACATGTTTTTCCCAACACCATATACATTTATTCCTTCAA
GACAACTTCACTCATCAACTGATCATCCATCATTTCAAACCATCTATTATACAAGTGACT
TAGTTTCAAATAATTATTTAATGAATCATCAGTGTTTAGGTGCAACACCTGAACAAATAC
GTGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTG
GTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGTTCAGAATGAAC
ACTTATATATTGATTATTGGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTAT
TTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATTT
CTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATAT
CATGGTCAGCGTCTACCATTTATCCATGTGGGGTTGTAGTCAAGCATATGCAAGGTTTAT
TTCGTTCTGTTGGAATTAATAACTGTGCTGAACCAGGCAATCGACTTCATTCACGATTTT
ATTTTATATTCGACAATCCAAAATACATAAGTAGTATGCTGTTGTGTCTTTCTTCATTTA
GTGTATTGTATCAATGTTTTTGTTCATATTGGGTTTGTGAATGGTATAAATTAATCGGTT
TAATAATTGATGCCTTATTTTGTTTTCTTAATTTATACTTACATTCTCGTAACTCAATCC
TCGTACATTTTGTTTATTCTCAAGAGAAAGGGTGGAGTTTATCAAATTATTTAGGTATTT
CTTCTTTACGGTTATTTTCTTCTAGTAGTTCATCTACAACTTCTATTTCCAATTAGATTC
TATTTGTCTTTCATTCAATCGGTTTTGTTCATGATTATCACTTTTATGACAATCATGAAT
TGTTCATAATCTGAAACTATTTCTACTTAAGTCTATTCTCATTTCACTTTTAATTGTTTT
TGTTTTACTTAATCCATTATATCTCTTATTGTTTACTCTCAAGGTACTTTTTGCTTGTAT
AATGATATGAGGAGTATGTTTTGTGAACATATGGTTACTACACTCCATACTTACGTTTTT
TATTCTTTTCTTCAATAAAATAATAAATAAAATTT

consensusID : consensus_8263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence

                              [CTCGCGGCCAGAATTCGGCACGAGGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGGTTCAGAATGAACAC]

[+] EMBL CD078185             [CTCGCGGCCAGAATTCGGCACGAGGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGGTTCAGAATGAACAC]




>consensus_8263#1
CTCGCGGCCAGAATTCGGCACGAGGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCA
AGGCTAGTGGATATTTTAATTGGTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCA
ATTATTTTTGGTTCAGAATGAACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8263#0      CGGATAGTACTGATAGTAGTAATTCAAGGATGGTATATCAACCGTCTATTTTCAGTTTAA 60
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      CAAATTGTCTACAGCTGTTTTCATCGTCCTGTTGGCGATGTCTCACAATCATTACGGACT 120
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      GGCCATGTTTACCTTCCGAAAACATGTTTTTCCCAACACCATATACATTTATTCCTTCAA 180
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      GACAACTTCACTCATCAACTGATCATCCATCATTTCAAACCATCTATTATACAAGTGACT 240
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TAGTTTCAAATAATTATTTAATGAATCATCAGTGTTTAGGTGCAACACCTGAACAAATAC 300
consensus_8263#1      -----------------------------------CTCGCGGCCAGAATTCGGCACGAG- 24
                                                          * *  ** * *  *   **     

consensus_8263#0      GTGAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTG 360
consensus_8263#1      --GAGGAAGTTGAACTGTATAGACGTGATTTTAATGCAAGGCTAGTGGATATTTTAATTG 82
                        **********************************************************

consensus_8263#0      GTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTG-TTCAGAATGAA 419
consensus_8263#1      GTACCTTACATGCAGTTTATTATGGATGCTTTCTGCCAATTATTTTTGGTTCAGAATGAA 142
                      ************************************************ ***********

consensus_8263#0      CACTTATATATTGATTATTGGTGGTGTCTCCAGCATTGTTTCTTAACTGGTTTAGTAGTA 479
consensus_8263#1      CAC--------------------------------------------------------- 145
                      ***                                                         

consensus_8263#0      TTTCTGTTACGTTGGCATTATTTTCTACCATGTGATTACATCGACCTTCTGCATCGAATT 539
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TCTATGCATCTGGGTAGTTGGGAGAATTCGCTCACACGAAGTGGATATCTAAACGCTATA 599
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TCATGGTCAGCGTCTACCATTTATCCATGTGGGGTTGTAGTCAAGCATATGCAAGGTTTA 659
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TTTCGTTCTGTTGGAATTAATAACTGTGCTGAACCAGGCAATCGACTTCATTCACGATTT 719
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TATTTTATATTCGACAATCCAAAATACATAAGTAGTATGCTGTTGTGTCTTTCTTCATTT 779
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      AGTGTATTGTATCAATGTTTTTGTTCATATTGGGTTTGTGAATGGTATAAATTAATCGGT 839
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TTAATAATTGATGCCTTATTTTGTTTTCTTAATTTATACTTACATTCTCGTAACTCAATC 899
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      CTCGTACATTTTGTTTATTCTCAAGAGAAAGGGTGGAGTTTATCAAATTATTTAGGTATT 959
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TCTTCTTTACGGTTATTTTCTTCTAGTAGTTCATCTACAACTTCTATTTCCAATTAGATT 1019
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      CTATTTGTCTTTCATTCAATCGGTTTTGTTCATGATTATCACTTTTATGACAATCATGAA 1079
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TTGTTCATAATCTGAAACTATTTCTACTTAAGTCTATTCTCATTTCACTTTTAATTGTTT 1139
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TTGTTTTACTTAATCCATTATATCTCTTATTGTTTACTCTCAAGGTACTTTTTGCTTGTA 1199
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TAATGATATGAGGAGTATGTTTTGTGAACATATGGTTACTACACTCCATACTTACGTTTT 1259
consensus_8263#1      ------------------------------------------------------------
                                                                                  

consensus_8263#0      TTATTCTTTTCTTCAATAAAATAATAAATAAAATTT 1295
consensus_8263#1      ------------------------------------