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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1098 fasta sequence
[CGNAGGCCATTAATTCGGCACGAGGGTCAACGATGGACTGCCGAACGTATTCATCAGAAAGACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATGCGTTTTCAACCAGGTATTTTTCTTACCGTCATAATCGCTCGCAAATTAAATGGTAAATTGGAGTATCGTTACGAAAGGGAATACATCACTGAATTCACAGAAACATTATCTGCCAGCAGTCCTCTTGACGCCATATCAGAACATCATATGGTTTTGCAAGCAGTTCTTACTTTTATCAATACACATTTGGAACAAGTTGGCTTTCATGTTAGTGATCTCTCCAAAGATTTTAGAGATGGTGTCTTACTTATTCTATTAATGGGTCTTATTGACGGTTATTTTGTACCATTTCATGCATATCATCCAACACCAACAACAGAAGAATTGTGTATATCAAATATTAAACTAGCCTTTGAACTTATTCAAGCAGCTGGTATGGTTGAACCTCCAGCAAAACCTGAAGAAATTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCA-AA-ATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATAT-AGTTTTGGAG-TATCATATTATTTTTCTGCGGT--ACTGTTTACTTGCTATGATACGTNCCTTGACTACTGANAGGAATGATATTTTTCTCCTACATGANNTTGTGGGATGATAATTTTTGCCTCGGGGTGTTCTCTGATGATTCTTTACAATAGAGGG]
[+] EMBL CD081623 [CGNAGGCCATTAATTCGGCACGAGGGTCAACGATGGACTGCCGAACGTATTCATCAGAAAGACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATGCGTTTTCAACCAGGTATTTTTCTTACCGTCATAATCGCTCGCAAATTAAATGGTAAATTGGAGTATCGTTACGAAAGGGAATACATCACTGAATTCACAGAAACATTATCTGCCAGCAGTCCTCTTGACGCCATATCAGAACATCATATGGTTTTGCAAGCAGTTCTTACTTTTATCAATACACATTTGGAACAAGTTGGCTTTCATGTTAGTGATCTCTCCAAAGATTTTAGAGATGGTGTCTTACTTATTCTATTAATGGGTCTTATTGACGGTTATTTTGTACCATTTCATGCATATCATCCAACACCAACAACAGAAGAATTGTGTATATCAAATATTAAACTAGCCTTTGAACTTATTCAAGCAGCTGGTATGGTTGAACCTCCAGCAAAACCTGAAGAAATTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAAATAGTGACAGCTAGTTACTTTCTTTTCAGAAACAAATAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCA AA ATATATGTTCTGTAGCCTGAAATG TTTACACCATT AACATTCTGATAT AGTTTTGGAG TATCATATTATTTTTCTGCGGT ACTGTTTACTTGCTATGATACGTNCCTTGACTACTGANAGGAATGATATTTTTCTCCTACATGANNTTGTGGGATGATAATTTTTGCCTCGGGGTGTTCTCTGATGATTCTTTACAATAGAGGG]
[+] EMBL CD078638 [ TGATCTCTCCAAAGATTTTAGAGATGGTGTCTTACTTATTCTATTAATGGGTCTTATTGACGGTTATTTTGTACCATTTCATGCATATCATCCAACACCAACAACAGAAGAATTGTGTATATCAAATATTAAACTAGCCTTTGAACTTATTCAAGCAGCTGGTATGGTTGAACCTCCAGCAAAACCTGAAGAAATTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCANAT ATATATGTTCTGTACCCTGAAATGTTTTACACCATTAAACATTCTGATAT ]
[+] EMBL CD084310 [ GCAAAACCTGAAGAAATTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATCTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCA AATATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATNAGTTTAGTAGTTATC TATTATTTTTCTGCGGTTAACTGT ]
consensusID : consensus_8266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence
[TTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAATATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATTAGTTTTGTAGTTATCTATATTATTTTTCTGCGGTTAACTGTTTTACTTTGCTTATGATCACGTTCCTTTTGACTTACTGGTAGTGTAATTGATTATTTTTTTCTTCCTACTATGTAGTTTTGTTGTGTATTGTATAAGTTTTCTGCGCTCGTGGGGTTGTATCTCACTGAATGTATTCATTACTACCAAATAGAATGGGGTTT]
[-] EMBL CD075445 [TTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAATATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATTAGTTTTGTAGTTATCTATATTATTTTTCTGCGGTTAACTGTTTTACTTTGCTTATGATCACGTTCCTTTTGACTTACTGGTAGTGTAATTGATTATTTTTTTCTTCCTACTATGTAGTTTTGTTGTGTATTGTATAAGTTTTCTGCGCTCGTGGGGTTGTATCTCACTGAATGTATTCATTACTACCAAATAGAATGGGGTTT]
[-] EMBL CD073102 [ ACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAATATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATTAGTTTTGTAGTTATCTATATTATTTTTCTGCGGTTAACTGTTTTACTTTGCTTATGATCACGTTCCTTTTGACTTACTGGTAGTGTAATTGATTATTTTTTTCTTCCTACTATGTAGTTTTGTTGTGTATTGTATAAGTTTTCTGCGCTCGTGGGGTTGTATCTCACTGAATGTATTCATTACTACCAAATAGAATGGGGTTT]
consensusID : consensus_8266#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence
[ACAAATTATNGGCATGGATTAACAACGAACTATCAGACNATCGAATTCTCGTGAGAGATATTCAAGAAGACTTATATGATGGTCAACTTCTGCAAAAGTTAGTTGAAAAACTAGCGAAGATAGAGCTAGATCATCCTGAGTTAACTCAGTCTGAAATCGGACAGCTTCAACGCTTGCGAGGTGTATTGCAAACTGTCAACGAAATACTTCATGTATCAGAAAGTTGGGCCAGTCAACGATGGACCGCCGAACGTATTCATCAGAAAGACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATGCGTTTTCAACCAGGTATT]
[-] EMBL CD138254 [ACAAATTATNGGCATGGATTAACAACGAACTATCAGACNATCGAATTCTCGTGAGAGATATTCAAGAAGACTTATATGATGGTCAACTTCTGCAAAAGTTAGTTGAAAAACTAGCGAAGATAGAGCTAGATCATCCTGAGTTAACTCAGTCTGAAATCGGACAGCTTCAACGCTTGCGAGGTGTATTGCAAACTGTCAACGAAATACTTCATGTATCAGAAAGTTGGGCCAGTCAACGATGGACCGCCGAACGTATTCATCAGAAAGACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATGCGTTTTCAACCAGGTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8266#0 CGNAGGCCATTAATTCGGCACGAGGGTCAACGATGGACTGCCGAACGTATTCATCAGAAA 60
consensus_8266#1 ------------------------------------------------------------
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 GACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATG 120
consensus_8266#1 ------------------------------------------------------------
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 CGTTTTCAACCAGGTATTTTTCTTACCGTCATAATCGCTCGCAAATTAAATGGTAAATTG 180
consensus_8266#1 ------------------------------------------------------------
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 GAGTATCGTTACGAAAGGGAATACATCACTGAATTCACAGAAACATTATCTGCCAGCAGT 240
consensus_8266#1 ------------------------------------------------------------
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 CCTCTTGACGCCATATCAGAACATCATATGGTTTTGCAAGCAGTTCTTACTTTTATCAAT 300
consensus_8266#1 ------------------------------------------------------------
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 ACACATTTGGAACAAGTTGGCTTTCATGTTAGTGATCTCTCCAAAGATTTTAGAGATGGT 360
consensus_8266#1 ------------------------------------------------------------
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 GTCTTACTTATTCTATTAATGGGTCTTATTGACGGTTATTTTGTACCATTTCATGCATAT 420
consensus_8266#1 ------------------------------------------------------------
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 CATCCAACACCAACAACAGAAGAATTGTGTATATCAAATATTAAACTAGCCTTTGAACTT 480
consensus_8266#1 ------------------------------------------------------------
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 ATTCAAGCAGCTGGTATGGTTGAACCTCCAGCAAAACCTGAAGAAATTGTTGCAGGCGAT 540
consensus_8266#1 ----------------------------------------------TTGTTGCAGGCGAT 14
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 AGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGAT 600
consensus_8266#1 AGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGAT 74
consensus_8266#2 ---------------------------ACAAATTATNGGCATGGATTAACAACGAACTAT 33
* *** ** * * * * * **
consensus_8266#0 GAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAA---T 657
consensus_8266#1 GAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAA---T 131
consensus_8266#2 CAG-ACNATCGAATTCTCGTGAGAGATATTCAAGAA---GACTTATATGATGGTCAACTT 89
* * *** * * * ****** *** ** **** ***** * *
consensus_8266#0 AACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGT 717
consensus_8266#1 AACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGT 191
consensus_8266#2 CTGCAAAAGTTAGTTGAAAAACTAGCGAAGATAGAGCTAG-ATCATCCTGAGTTAACTCA 148
***** *** * * * * *** * ** ** * * *****
consensus_8266#0 GATATTTGTCAGCTGTTTTCTGTGAT-GCTAACTTT-TTATAAATTACCATGGGGTTACC 775
consensus_8266#1 GATATTTGTCAGCTGTTTTCTGTGAT-GCTAACTTT-TTATAAATTACCATGGGGTTACC 249
consensus_8266#2 GTCTGAAATCGGACAGCTTCAACGCTTGCGAGGTGTATTGCAAACTGTCAACGAAATACT 208
* ** * *** * * ** * * * ** *** * ** * ***
consensus_8266#0 ATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTT 835
consensus_8266#1 ATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTT 309
consensus_8266#2 TCATG----TATCAGAAAGTTGGGCCAGTC--AACGATGGACCGCCGA--ACGTATTCAT 260
*** ** * ** * * ** * *** ** ** * * *
consensus_8266#0 CAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAA-AT 894
consensus_8266#1 CAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAATAT 369
consensus_8266#2 CAGAAAGACTTGGT-TGCTATTCTG-CGCCTACTAGTTGCTATTGCTCGTC----AATTT 314
****** * * ** * *** * * ** * ** * *** ** ** *
consensus_8266#0 ATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATAT-AGTTTTGGAGT 953
consensus_8266#1 ATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATTAGTTTTGTAGT 429
consensus_8266#2 A----------AACCAGAAATGCGTT-TTCAACCAGGTATT------------------- 344
* * ** ****** ** * * * ***
consensus_8266#0 -ATC-ATATTATTTTTCTGCGGT--ACTGTTT-ACTTG--CTATGAT-ACGTNCCTT--G 1003
consensus_8266#1 TATCTATATTATTTTTCTGCGGTTAACTGTTTTACTTTGCTTATGATCACGTTCCTTTTG 489
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 ACT-ACTGANAG---GAATGAT-ATTTTTCTC------CTACATGANNTTGTGGGATG-- 1050
consensus_8266#1 ACTTACTGGTAGTGTAATTGATTATTTTTTTCTTCCTACTATGTAGTTTTGTTGTGTATT 549
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 --ATAA--TTTTTGC-CTCGGGGTGTTCTCT-------GATG-ATTCTTTAC-----AAT 1092
consensus_8266#1 GTATAAGTTTTCTGCGCTCGTGGGGTTGTATCTCACTGAATGTATTCATTACTACCAAAT 609
consensus_8266#2 ------------------------------------------------------------
consensus_8266#0 AGAGGG------ 1098
consensus_8266#1 AGAATGGGGTTT 621
consensus_8266#2 ------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||