These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8268#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 474 fasta sequence [TTTTTTTTTTTTTTTGGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCA-TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTGTCAGCTGAACTGACTACCAAGGTATCAGACTTGGTTGACTCAGTCTGATCGGTTTCGACGGATGTATTTAG] [+] EMBL AI395653 [TTTTTTTTTTTTTTTGGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCA TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGNTCGCGCTCGTTTAAATGCTTCCTGGGATGCANATAGATCTTGACTTGATGCAACTGGGCG ] [+] EMBL AI395668 [ TTTTTTTTTTTTTTGGCCAATAAAATAAAATATTTACTTGAGATTAATTGCACCA TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTGTCAGCTGAACTGACTACCAAGGTATCAGACTTGGTTGACTCAGTCTGA ] [+] EMBL AI395080 [ TTTTTTTTTTTTGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCA TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTAATTCCTGTTGTGAaa ] [+] EMBL AI395088 [ taTTTTTTTTTTTGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCA TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGATGCTGACTTAAGTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGAGCTCGCTTAATTGCTTCCTGGATTGCAAATAG ] [+] EMBL CD074603 [ ATAAAATATTTATTTGAGATTAATTGCACCACTACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTGTCAGCTGAACTGACTACCAAGGTATCAGACTTGGTTGACTCAGTCTGATCGGTTTCGACGGATGTATTTAG] consensusID : consensus_8268#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence [CAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTCAAGATCTATTTGCAATCCAGGTG] [-] EMBL CD181867 [CAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTCAAGATCTATTTGCAATCCAGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8268#0 TTTTTTTTTTTTTTTGGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCATACT 60 consensus_8268#1 ------------------------------------------------------------ consensus_8268#0 TACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCA 120 consensus_8268#1 ------------------------------------------------------------ consensus_8268#0 CTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGA 180 consensus_8268#1 ------------------------------------------------------------ consensus_8268#0 TTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAA 240 consensus_8268#1 ------------------------------------------------------------ consensus_8268#0 TCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCG 300 consensus_8268#1 ------------------------CAACTGATGAAGACGTTCCACTTCGTCCATAGTTCG 36 ************************************ consensus_8268#0 CGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTT 360 consensus_8268#1 CGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTT 96 ************************************************************ consensus_8268#0 ATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTGTCAGCTGAACTGACTAC 420 consensus_8268#1 ATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGT-CAAGATCTATTTGCAAT 155 ****************************************** ** * * * * * consensus_8268#0 CAAGGTATCAGACTTGGTTGACTCAGTCTGATCGGTTTCGACGGATGTATTTAG 474 consensus_8268#1 CCAGGTG----------------------------------------------- 162 * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||