cluster # 8268

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Schistosoma mansoni
cluster # 8268 cluster # 8268 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8268#0 length = 474 sequences # 5

consensus_8268#1 length = 162 sequences # 1

consensusID : consensus_8268#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 474
fasta sequence

                              [TTTTTTTTTTTTTTTGGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCA-TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTGTCAGCTGAACTGACTACCAAGGTATCAGACTTGGTTGACTCAGTCTGATCGGTTTCGACGGATGTATTTAG]

[+] EMBL AI395653             [TTTTTTTTTTTTTTTGGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCA TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGNTCGCGCTCGTTTAAATGCTTCCTGGGATGCANATAGATCTTGACTTGATGCAACTGGGCG                                                                                                                     ]
[+] EMBL AI395668             [ TTTTTTTTTTTTTTGGCCAATAAAATAAAATATTTACTTGAGATTAATTGCACCA TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTGTCAGCTGAACTGACTACCAAGGTATCAGACTTGGTTGACTCAGTCTGA                       ]
[+] EMBL AI395080             [    TTTTTTTTTTTTGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCA TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTAATTCCTGTTGTGAaa                                                                                                  ]
[+] EMBL AI395088             [   taTTTTTTTTTTTGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCA TACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGATGCTGACTTAAGTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGAGCTCGCTTAATTGCTTCCTGGATTGCAAATAG                                                                                                                                             ]
[+] EMBL CD074603             [                         ATAAAATATTTATTTGAGATTAATTGCACCACTACTTACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCACTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGATTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAATCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTGTCAGCTGAACTGACTACCAAGGTATCAGACTTGGTTGACTCAGTCTGATCGGTTTCGACGGATGTATTTAG]




>consensus_8268#0
TTTTTTTTTTTTTTTGGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCATACT
TACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCA
CTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGA
TTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAA
TCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCG
CGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTT
ATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTGTCAGCTGAACTGACTAC
CAAGGTATCAGACTTGGTTGACTCAGTCTGATCGGTTTCGACGGATGTATTTAG

consensusID : consensus_8268#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence

                              [CAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTCAAGATCTATTTGCAATCCAGGTG]

[-] EMBL CD181867             [CAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTCAAGATCTATTTGCAATCCAGGTG]




>consensus_8268#1
CAACTGATGAAGACGTTCCACTTCGTCCATAGTTCGCGCTCGTTTAATTGCTTCCTGGAT
TGCAAATAGATCTTGACTTGATGCAACTGGGCGTTTATTTCCTGTTGTGACAGGAGTTGA
CGGTGGAGGCATAGGAGTCAAGATCTATTTGCAATCCAGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8268#0      TTTTTTTTTTTTTTTGGCTAGTAAAATAAAATATTTACTTGAGATTAATTGCACCATACT 60
consensus_8268#1      ------------------------------------------------------------
                                                                                  

consensus_8268#0      TACATAACAGTTAAAAGTATGCATACAAACATATTATAGTACAGTCTTTACACAGAGTCA 120
consensus_8268#1      ------------------------------------------------------------
                                                                                  

consensus_8268#0      CTGAAAATTTTGTCGATAGATGGCTTTTCTGTCCCCCATATAAATATTTATATATGGTGA 180
consensus_8268#1      ------------------------------------------------------------
                                                                                  

consensus_8268#0      TTACTGAGAGGACTTCTGTTGTTGTTGCTGCCTTAATTGTTTCTGCCACTGAGCTGCGAA 240
consensus_8268#1      ------------------------------------------------------------
                                                                                  

consensus_8268#0      TCCTGCAAACTGACCACTACTTAGCAACTGATGAAGACGTTCCACTTCGTCCATAGTTCG 300
consensus_8268#1      ------------------------CAACTGATGAAGACGTTCCACTTCGTCCATAGTTCG 36
                                              ************************************

consensus_8268#0      CGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTT 360
consensus_8268#1      CGCTCGTTTAATTGCTTCCTGGATTGCAAATAGATCTTGACTTGATGCAACTGGGCGTTT 96
                      ************************************************************

consensus_8268#0      ATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGTGTCAGCTGAACTGACTAC 420
consensus_8268#1      ATTTCCTGTTGTGACAGGAGTTGACGGTGGAGGCATAGGAGT-CAAGATCTATTTGCAAT 155
                      ******************************************   ** *  * *  * * 

consensus_8268#0      CAAGGTATCAGACTTGGTTGACTCAGTCTGATCGGTTTCGACGGATGTATTTAG 474
consensus_8268#1      CCAGGTG----------------------------------------------- 162
                      * ****