These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 597 fasta sequence [CTTTTATAATAATAATAATAATAATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATC-TTACTG-ATCCTTATACATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGATCGGCGACGATGGATTGCTGCTGATTTAGATGAAGATGATAGTTTATATAAGACTGAGTTCACTGATTNTGTACATCCTGAAGACAGGCCAA] [+] EMBL AI977203 [CTTTTATAATAATAATAATAATAATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATC TTACTG ATCCTTATACATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAAATAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGATCGGCGACGATGGATTGCTGCTGATTTAGATGAAGATGATAGTTTATATA ] [+] EMBL AI975599 [ ATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATC TTACTG ATCCTTATACATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAATGAATAACTGAAATAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATC ] [+] EMBL BF936106 [ TTCAATAGATATATCATC TTACTG ATCCTTATACATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGATCGGCGACAATGGATTGCTGCTGATTTAGATGAAGATGA ] [+] EMBL SM768 [ GATATATCATCTTTACTGNATCCTTATACATTATNCTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATGNTGNTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGANGAGACTGCTAAAGAATNNNCACAACTCACACCAAATGAAAGTGAAGAACAATTAANGATTATTATACGAAANATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAnn ] [+] EMBL AI977461 [ AACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGATCGGCGACGATGGATTGCTGCTGATTTAGATGAAGATGATAGTTTAAATAAGACTGAGTTCACTGATTNTGTACATCCTGAAGACAGGCCAA] consensusID : consensus_8273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CCCTCAGGCCAGAATTCGGCACGAGGATTGCTTGTATACACTTTTTAACCCTTTTATAATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATCTTACTGATCCTTATCATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTGGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCTAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCA] [+] EMBL CD083309 [CCCTCAGGCCAGAATTCGGCACGAGGATTGCTTGTATACACTTTTTAACCCTTTTATAATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATCTTACTGATCCTTATCATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTGGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCTAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8273#0 ------------------------------CTTTTATAATAATAATAA-----TAATAAT 25 consensus_8273#1 CCCTCAGGCCAGAATTCGGCACGAGGATTGCTTGTATACACTTTTTAACCCTTTTATAAT 60 *** **** * *** * ***** consensus_8273#0 AATAATAATAATGATAACAATATCCTTCAATAGATATATCATCTTACTGATCCTTATACA 85 consensus_8273#1 AATAATAATAATGATAACAATATCCTTCAATAGATATATCATCTTACTGATCCTTAT-CA 119 ********************************************************* ** consensus_8273#0 TTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGC 145 consensus_8273#1 TTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGC 179 ************************************************************ consensus_8273#0 TGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGAC 205 consensus_8273#1 TGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGAC 239 ************************************************************ consensus_8273#0 TGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTAT 265 consensus_8273#1 TGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTAT 299 ************************************************************ consensus_8273#0 ACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAAAATCTTGGAT 325 consensus_8273#1 ACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTGGAATTAAAATCTTGGAT 359 ****************************************** ***************** consensus_8273#0 TGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAA 385 consensus_8273#1 TGAATATGTAGCTAAAAAATCTAAACAAAATAGTACTGATCGTCAATGGAATGATATAAA 419 ********************* ************************************** consensus_8273#0 TCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGA 445 consensus_8273#1 TCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGA 479 ************************************************************ consensus_8273#0 AGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGA 505 consensus_8273#1 AGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCA------ 533 ****************************************************** consensus_8273#0 TCGGCGACGATGGATTGCTGCTGATTTAGATGAAGATGATAGTTTATATAAGACTGAGTT 565 consensus_8273#1 ------------------------------------------------------------ consensus_8273#0 CACTGATTNTGTACATCCTGAAGACAGGCCAA 597 consensus_8273#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||