These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 731 fasta sequence [AGATGAAGACGATGAGGAAGACACAAGTGAACGTCATAAGGGTGTTAGTCATTTAATTGAAGTATGCAATCCTAATCGTATAAAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAGAAAAACAAGCCCGTGAAGCACAACGTGCAGCAACAGCAGCCGCAAAACGTACATCTCAAACAAAACCACAACAGAAAAGTGGTCGTAGTGGTTTGCAGACA-ACGGGCAGTAACAAAGAGCATCAAACAGTAAATCAAAGAAACAATATAAATTCATCAGAAATAACCGATGATAATTGACCAATTAATTGGTTGATCAGTGATCATTATCCTTAAGCCCTATGCTTTTCTGATATGATTCACGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAGTCAAATCCAACTTTCCTTATTCGTTTCCCTATATTTTTTTTCGATACATGCCATAAAACTGATTTAGATTACATTCTAAATATGTTTTATAGCATTTTCGTAGTTGGAAAATCTCTATTACCTAACTCTCTCTGTATGAATAACTTAAAAAAGTTTTTAAATTGTATCCTTCTCAGTTAAAAGTGCCCTCTTTT] [+] EMBL CD132190 [AGATGAAGACGATGAGGAAGACACAAGTGAACGTCATAAGGGTGTTAGTCATTTAATTGAAGTATGCAATCCTAATCGTATAAAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAGAAAAACAAGCCCGTGAAGCACAA ] [-] EMBL CD086159 [ GAAGACGATGAGGAAGACACAAGTGAACGTCATAAGGGTGTTAGTCATTTAATTGAAGTATGCAATCCTAATCGTATAAAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTATTATCAGAAACTGAATTAGCAGCTAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAATAACTTGAACAAGAAAAACAAGCCCGTGAAGCACAACGTGCAGCAACAGCAGCCGCAAAACGTACATCTCAAACAAAACCACAACAGAAAAGTGGTCGTAGTGGTTTGCAGACA ACGGGCAG ] [+] EMBL CD083304 [ cgaggAGTATGCAATCCTAATCGTAT AAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAGAAAAACAAGCCCGTGAAGCACAACGTGCAGCAACAGCAGCCGCAAAACGTACATCTCAAACAAAACCACAACAGAAAAGTGGTCGTAGTGGTAAACAG CATACGAACAGTAACAAAGAGCATCAAACAGTAAATCAAAGAAACAATATAAATTCATCAGAAATAACCGATGATAATTGACCAATTAATTGGTTGATCAGTGATCATTATCCTTAAGCCCTATGCTTTTCTGATATGATTCACGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAGTCAAATCCAACTTTCCTTATTCGTTTCCCTATATNTTTTTTCGATACATGCCATAAAACTGATTTAGATTACAT ] [-] EMBL CD139806 [ AAATCAAAGAAACAATATAAATTCATCAGAAATAACCGATGATAATTGACCAATTAATTGGTTGATCAGTGATCATTATCCTTAAGCCCTATGCTTTTCTGATATGATTCACGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAGTCAAATCCAACTTTCCTTATTCGTTTCCCTATATTTTTTTTCGATACATGCCATAAAACTGATTTAGATTACATTCTAAATATGTTTTATAGC ] [-] EMBL AI067458 [ CGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAGTCAAATCCAACTTTCCTTATTCGTTTCCCTATATTTTTTTTGGATACATGCCATAAAACTGATTTAGATTACATTCTAAATATGTTTTATAGCATTTTCGTAGTTGGAAAATCTCTATTACCTAACTCTCTCTGTATGAATAACTTAAAAAAGTTTTTAAATTGTATCCTTCTCAGTTAAAAGTGCCCTCTTTT] consensusID : consensus_8276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [ACTGACTGCTCTATTTAGTGTAGTTTGGATCGCCGATTTGTATCACTAGCTCTCACAAACAATATGCCTTAGAGCTGTACTAAGTAAATGCATTATTTTAATAGACGGTAATGAAAATAATCCACCGATTACATATATGTTGCATTTCATCAATATTATATGTAAACTGCATGCAAATTAGCTATTAAACTAAGTTTTTTTCTAAGGAAAAGTAGTAATGTTTTCTGTATTTCAGTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCATGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAG] [+] EMBL CD186829 [ACTGACTGCTCTATTTAGTGTAGTTTGGATCGCCGATTTGTATCACTAGCTCTCACAAACAATATGCCTTAGAGCTGTACTAAGTAAATGCATTATTTTAATAGACGGTAATGAAAATAATCCACCGATTACATATATGTTGCATTTCATCAATATTATATGTAAACTGCATGCAAATTAGCTATTAAACTAAGTTTTTTTCTAAGGAAAAGTAGTAATGTTTTCTGTATTTCAGTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCATGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8276#0 AGATGAAGACGATGAGGAAGACACAAGTGAACGTCATAAGGGTGTTAGTCATTTAATTGA 60 consensus_8276#1 -------------------------------------------ACTGACTGCTCTATTTA 17 * * *** * consensus_8276#0 AGTATGCAATCCTAATCGTATAAAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGC 120 consensus_8276#1 G---TGTAGTTTGGATCGC---CGATTTGTATCACTAGCTC--TCACAAACAATATGCCT 69 ** * * **** ** * * ** * **** **** ** * * * consensus_8276#0 CGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGC 180 consensus_8276#1 TAGAGCTGTACTAAGTA-AATGCATTATTTTAATAGACGGTAATGAAAATAATCCACCGA 128 * ** * * ** ** ** * ** ** * * ** *** * * consensus_8276#0 TAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGA 240 consensus_8276#1 TTACATA-TATGT-TGCATTTCATCAATATTATATGTAAACT----GCATGCAAATT--A 180 * ***** * ** * ** ** * * * * ** ** * ** *** * * consensus_8276#0 ACAAGAAAAACAAGCCCGTGAAGCACAACGTGCAGCAACAGCAGCCGCAAAAC-GTACAT 299 consensus_8276#1 GCTATTAAACTAAGTTTTTTTCTAAGGAAAAGTAGTAATGTTTTCTGTATTTCAGTCCTT 240 * * *** *** * * * * ** ** * * * * ** * * consensus_8276#0 CTCAAACA-AAACCACAACAGAAAA-GTGGTCGTAGTGGTTTGCAGACAACGGGCAGTAA 357 consensus_8276#1 CACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATC-CAATAAAATTACTATCA 299 * * ** * *** * * ** * * * * * ** ** * * * consensus_8276#0 CAAAGAGCATCAAACAGTAAATCAAAGAAACAATATAAATTCATCAGAAATAACCGATGA 417 consensus_8276#1 GAAACTGAATTAG-CAGCTAAC--ATAGCATGTCTTCAATTGGTTAGAAAAGA---ACGT 353 *** * ** * *** ** * * * **** * ***** * * * consensus_8276#0 TAATTGACCAATTAATTGGTTGATCAGTGATCATTATCCTTAAGCCCTATGCTTTTCTGA 477 consensus_8276#1 GAATTAGCAGCTCAAAAACTTGAACAAG-------------------------------- 381 **** * * ** **** ** consensus_8276#0 TATGATTCACGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAG 537 consensus_8276#1 ------------------------------------------------------------ consensus_8276#0 TCAAATCCAACTTTCCTTATTCGTTTCCCTATATTTTTTTTCGATACATGCCATAAAACT 597 consensus_8276#1 ------------------------------------------------------------ consensus_8276#0 GATTTAGATTACATTCTAAATATGTTTTATAGCATTTTCGTAGTTGGAAAATCTCTATTA 657 consensus_8276#1 ------------------------------------------------------------ consensus_8276#0 CCTAACTCTCTCTGTATGAATAACTTAAAAAAGTTTTTAAATTGTATCCTTCTCAGTTAA 717 consensus_8276#1 ------------------------------------------------------------ consensus_8276#0 AAGTGCCCTCTTTT 731 consensus_8276#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||