These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 759 fasta sequence [CCGAACTCATGACTCAAGGATGAAGTTTTATCTGCAACTGTTTAAGGGTGTAACAGCCAGTATTTATAGCGATACTAACTTTCCACAGAGAAAGCAAGTAATTGAAGAAAGTTAATGCTGAAATTATCACACCTCAACTTGTTCCATGGATTTCTGTTGCCAGTGGTAAGGGCTTAAAATTACCGAGCTTATTTATCAAAAACTACTCTCACAAATCCTTTGTGTGTTACTTAGTTCAAGCTGTTTTCCATTGGGCAGTGTAGCAAGCTTCCAAGTCATCAAGACCATCAATAACCCAGTTTTCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGACAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATTATTTAGATACCATTGTAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATTACAGAGTTTTTTCGTAAGATGTGAAAACCATACATTAAATACTTCATTTGCAAATCCTCCATTAATTGTCTCAAACTTCATCGTCTTTCATAGCTATTACGATTACTCTCTGTTTACATTTTCGTTCTCTTCGATTCGACCTCAACCTTCTGCTGCCAGGCATTCCACTTCTAACTGATGTTACATTAGTTTTGTCGACATGAGCAGTATATACCACATTATAATAAAGAATCTAAGCGTGATTTATCTGAGGTATCATTTTACTGACTAGCTAACAGT] [+] EMBL CD095684 [CCGAACTCATGACTCAAGGATGAAGTTTTATCTGCAACTGTTTAAGGGTGTAACAGCCAGTATTTATAGCGATACTAACTTTCCACAGAGAAAGCAAGTAATTGAAGAAAGTTAATGCTGAAATTATCACACCTCAACTTGTTCCATGGATTTCTGTTGCCAGTGGTAAGGGCTTAAAATTACCGAGCTTATTTATCAAAAACTACTCTCACAAATCCTTTGTGTGTTACTTAGTTCAAGCTGTTTTCCATTGGGCAGTGTAGCAAGCTTCCAAGTCATCAAGACCATCAATAACCCAGTTTTCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGACAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATTATTTAGATACCATTGCAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATTACAGAGTTTTTTCGTAAGATGTGAAAACCATACATTACATACTT ] [-] EMBL CD063829 [ AGTTTTCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGACAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATGATTTAGATACCATTGTAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATTACAGAGTTTTTTCGTAAGATGTGAAAGCCATACATTAAATACTTCATTTGCAAATCCTCCATTAATTGTCTCAAACTTCATCGTCTTTCATAGCTATTACGATTACTCTCTGTTTACATTTTCGTTCTCTTCGATTCGACCTCAACCTTCTGCTGCCAGGCATTCCACTTCTAACTGATGTTACATTAGTTTTGTCGACATGAGCAGTATATACCACATTATAATAAAGAATCTAAGCGTGATTTATCTGAGGTATCATTTTACTGACTAGCTAACAGT] [+] EMBL CD063811 [ TCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGACAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATTATTTAGATACCATTGTAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATTACAGAGTTTTTTCGTAAGATGTGAAAACCATACATTAAATACTTCATTTGCAAATCCTCCATTAATTGTCTCAAACTCCATCGTCTTTCATAGCTATTACGATTACTCTCTGTTTACATTTTCGTTCTCTTCGATTCGACCTCAACCTTCTGCTGCCAGGCATTCCACTTCTAACTGATGTTACATTAGTTTTGTCGACATGAGCAGTATATACCACATTATAATAAAGAATCTAAGCGTGATTTATCTGAGGTATCATTTTACTGACTA ] consensusID : consensus_8277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 258 fasta sequence [CAATTTATTATCTAATGCAAAATTAGAGTTCTTTGGTAAAATATGAAAACCATACATTAAATACTTCATTTGCAAATCTTCCATTAATTGTCCTTTACATGCTTTGTGGTTCTTCCACTTCTCAATTCCTTTCTGTTTTTTCTTCAGTTCAATCTTCTCAACCTTCTTCTGACAGGCCTTCCACCTCCAATCGGTGTTACATACTACTTATATCTGTCAGTGTAAGTAGCATACACAACGCTGGCATCACATCGTCAG] [+] EMBL CD075076 [CAATTTATTATCTAATGCAAAATTAGAGTTCTTTGGTAAAATATGAAAACCATACATTAAATACTTCATTTGCAAATCTTCCATTAATTGTCCTTTACATGCTTTGTGGTTCTTCCACTTCTCAATTCCTTTCTGTTTTTTCTTCAGTTCAATCTTCTCAACCTTCTTCTGACAGGCCTTCCACCTCCAATCGGTGTTACATACTACTTATATCTGTCAGTGTAAGTAGCATACACAACGCTGGCATCACATCGTCA ] [-] EMBL CD081246 [ AATTTATTATTTAATGCAAAATTAGAGTTCTTTGGTAAAATATGAAAACCATCCATTAAATACTTCATTTGCAAATCTTCCATTAATTGCCCTCCACATGCTTTGTGGTTCTTCCACTTCTCAATTCCTTTTTGTTTTTTGTTCAGTTCAATCTTCTCAACCTTCTTATGACAGGCCTTCCACCTCCAATCGGTGTTACATACTACTTATATCTGTCAGTGTAAGTAGCATACACAACGCTGGCATCACATCGTCAG] consensusID : consensus_8277#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence [ACAATTGAAGGAAGATTTGTAAATGAAGTATTTAATGTATGGTTTTCACATTTTACGAAAGAACTCTGTAAATTGGTTATCTCCATTTGAGTTCTTGTTCACTATGGCATTATTAACAATGAATGTAGTATAAAAGACGTTCAAAAGCCTGCATTTGTTTACTGAACTACATA] [+] EMBL CD179162 [ACAATTGAAGGAAGATTTGTAAATGAAGTATTTAATGTATGGTTTTCACATTTTACGAAAGAACTCTGTAAATTGGTTATCTCCATTTGAGTTCTTGTTCACTATGGCATTATTAACAATGAATGTAGTATAAAAGACGTTCAAAAGCCTGCATTTGTTTACTGAACTACATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8277#0 CCGAACTCATGACTCAAGGATGAAGTTTTATCTGCAACTGTTTAAGGGTGTAACAGCCAG 60 consensus_8277#1 ------------------------------------------------------------ consensus_8277#2 ------------------------------------------------------------ consensus_8277#0 TATTTATAGCGATACTAACTTTCCACAGAGAAAGCAAGTAATTGAAGAAAGTTAATGCTG 120 consensus_8277#1 ------------------------------------------------------------ consensus_8277#2 ------------------------------------------------------------ consensus_8277#0 AAATTATCACACCTCAACTTGTTCCATGGATTTCTGTTGCCAGTGGTAAGGGCTTAAAAT 180 consensus_8277#1 ------------------------------------------------------------ consensus_8277#2 ------------------------------------------------------------ consensus_8277#0 TACCGAGCTTATTTATCAAAAACTACTCTCACAAATCCTTTGTGTGTTACTTAGTTCAAG 240 consensus_8277#1 ------------------------------------------------------------ consensus_8277#2 ------------------------------------------------------------ consensus_8277#0 CTGTTTTCCATTGGGCAGTGTAGCAAGCTTCCAAGTCATCAAGACCATCAATAACCCAGT 300 consensus_8277#1 ------------------------------------------------------------ consensus_8277#2 ------------------------------------------------------------ consensus_8277#0 TTTCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGA 360 consensus_8277#1 ------------------------------------------------------------ consensus_8277#2 ------------------------------------------------------------ consensus_8277#0 CAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATTATTTAGAT 420 consensus_8277#1 ------------------------------------------------------------ consensus_8277#2 ------------------------------------------------------------ consensus_8277#0 ACCATTGTAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATT 480 consensus_8277#1 ------------------------------------CAATTTATTATCTAATGCAAAATT 24 consensus_8277#2 ------------------------------------------------------------ consensus_8277#0 ACAGAGTTTTTTCGTAAGATGTGAAAACCATACATTAAATACTTCATTTGCAAATCCTCC 540 consensus_8277#1 --AGAGTTCTTTGGTAAAATATGAAAACCATACATTAAATACTTCATTTGCAAATCTTCC 82 consensus_8277#2 ----ACAATTGAAGGAAGATTTGTAAATGAAGTATTTAATGTATGGTTTTCACATTTTAC 56 * * * ** ** ** *** * *** *** * *** ** ** * * consensus_8277#0 ATTAATTGTCTCAAACTT-CATCGTCTTTCATAGCTATTACGATTACTCTCTGTTTACAT 599 consensus_8277#1 ATTAATTGTCCTTTACATGCTTTGTGGTTCTTCCACTTCTCAATTCCTTTCTGT-----T 137 consensus_8277#2 GAAAGAACTCTGTAAATT--------GGTTATCTCCATTTGAGTTCTTGTTCACTATGGC 108 * ** * * * * * ** * * consensus_8277#0 TTTCGTTCTCTTCGATTCGACCTCAACCTTCTGCTGCCAGGCATTCCACTTCTAACTGAT 659 consensus_8277#1 TTTTCTTCAGTTCAATCT--TCTCAACCTTCTTCTGACAGGCCTTCCACCTCCAATCGGT 195 consensus_8277#2 ATTATTAACAATGAATGTAGTATAAAAGACGTTC--AAAAGCCTGCATTTGTTTACTGA- 165 ** * * ** * ** * * * ** * * * * consensus_8277#0 GTTACAT------TAGTTTTGTCGACATGAGCAGTATATACCACATTATAATAAAGAATC 713 consensus_8277#1 GTTACATACTACTTATATCTGTCAGTGTAAGTAGCATACACAACGCTGGCATCACATCGT 255 consensus_8277#2 ACTACATA---------------------------------------------------- 173 ***** consensus_8277#0 TAAGCGTGATTTATCTGAGGTATCATTTTACTGACTAGCTAACAGT 759 consensus_8277#1 CAG------------------------------------------- 258 consensus_8277#2 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||