These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 775 fasta sequence [ATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAGGAACGACCAGTTACGAATAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGCTCGCGCGGAAGCTATTCGTCAGGCACAGAAATCTCTATGGGAAGACGATTAACATGTCAATTACAATTATATTTTAGAATTATTCCTGTAAAAAGTGA-TTTTTTGCCTTTGGAATCCTTTTTATTTATAGTGAGAAAAAAATATCTTTGCATTTGACTAAAAATTCATATCATAATCATCAGGTAGTATCATGAGTAATATCTAACTTGTTTTTTTCCAACACTGACTTGTTAATTTTTTCATCTTTCTACTCTGTCTATCTGTGTACATGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCTCTTGGTCTATATGNGGGTCTATGGTAATTTGTTATTTTCTGGTGTTAAGCATGCTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTTTACTGANCTTA-NAACATANAANAAT] [-] EMBL CD126022 [ATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAGGAACGACCAGTTACGAATAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTAC ] [+] EMBL CD078646 [ ATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGCTCGCGCGGAAGCTATTCGTCAGGCACAGAAATCTCTATGGGAAGACGATTAACATGTCAATTACAATTATATTTTAGAATTATTCCTGTAAAAAGTGA TTTTTTGCCTTTGGAATCCTTTTTATTTATAGTGAGAAAAAAATATCTTTGCATTTGACTAAAAATTCATATCATAATCATCAGGTAGTATCATGAGTAATATCTAACTTGTTTTTTTCCAACACTGACTTGTTAATTTTTTCATCTTTCTACTCTGTCTATCTGTGTACATGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCTCTTGGTCTATATGNGGGTCTATGGTAATTTGTTATTTTCTGGTGTTAAGCATGCTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTTTACTGANCTTA NAACATANAANA ] [-] EMBL CD137294 [ TGGGAAGACGATTAACATGTCAAATACAATTATATTTTAGAATCATTCCTGTAAAAAGTGATTTTTTTGCCTTTGGAATCCTTTTTATTTATAGTGAGAAAAAAATATCTTTGCATTTGACTAAAAATTCATATCATAATCATCAGGTAGTATCATGAGTAATATCTAACTTGTTCTTTTCCAACACTGACTTGTTAATTTTTTCATCTTTCTACTCTGTCTATCTGTGTACATGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCT ] [-] EMBL CD073110 [ AAAATATCTTGGCATTTGACTAAAAATTCATATCATAATCATCAGGTAGTATCATGAGTAATATCTAACTTGTTTTTTTCCAACACTGACTTGTTAATTTTTTCATCTTTCTACTCTGTCTATCTGTGTACATGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTTAAATGAATATGGCATTAATAAATCATGGGACTTTTTTCATCAAGGGGATCTATTTGACAAGTTTTTTGTTAATTTTGCAAATCATCCAAATGTATTTTGAAAAAGGTTTTCTCTCCTGTTCCAAAAGTGGGTCTATGGTAATTTGTTATTTTCTGGTGTTAAGCATGCTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTTTACTGAACTTAGAAACATAAAAAAAT] consensusID : consensus_8283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [ATTTTCACTTGGAAGCGGAACTCACAGGATTTGAAGATAGCGGATTTTACCTTAAGTGGGTCGATGATACTCATTGTTTAGCTGTATTTTCTTCAAATGATGAAGCGAATCGTGCATTGGCTCAAATATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAAAAACGACCAGTTACGACTAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGGTAAATTATACATGTGTTTTCCGCATTATTTTTTATGTTTAATTTTCGTGATACCATTGGTTTTTAGAACATTATCCAACGATAAGCAGAGATGGATAGTGGCT] [-] EMBL CD093335 [ATTTTCACTTGGAAGCGGAACTCACAGGATTTGAAGATAGCGGATTTTACCTTAAGTGGGTCGATGATACTCATTGTTTAGCTGTATTTTCTTCAAATGATGAAGCGAATCGTGCATTGGCTCAAATATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAAAAACGACCAGTTACGACTAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGGTAAATTATACATGTGTTTTCCGCATTATTTTTTATGTTTAATTTTCGTGATACCATTGGTTTTTAGAACATTATCCAACGATAAGCAGAGATGGATAGTGGCT] consensusID : consensus_8283#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [TGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCTCTTGTTCGATATGAGGGTCTATGGTAATTTGAAATTTTTAGGTGTTAAGCATGCTTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTATCCTGTCAGTAGTAACTTAAAAAAAT] [-] EMBL CD076877 [TGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCTCTTGTTCGATATGAGGGTCTATGGTAATTTGAAATTTTTAGGTGTTAAGCATGCTTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTATCCTGTCAGTAGTAACTTAAAAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8283#0 ATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAA 60 consensus_8283#2 ------------------------------------------------------------ consensus_8283#1 ------------------------------------------------------------ consensus_8283#0 GATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAGGAACGACCAGTTACGAATAG 120 consensus_8283#2 ------------------------------------------------------------ consensus_8283#1 ------------------------------------------------------------ consensus_8283#0 TTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATC 180 consensus_8283#2 ------------------------------------------------------------ consensus_8283#1 ------------------------------------------------------------ consensus_8283#0 TCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGCTCG 240 consensus_8283#2 ------------------------------------------------------------ consensus_8283#1 ------------------------------------------------------------ consensus_8283#0 CGCGGAAGCTATTCGTCAGGCACAGAAATCTCTATGGGAAGACGATTAACATGTCAATTA 300 consensus_8283#2 ------------------------------------------------------------ consensus_8283#1 ------------------------------------------------------------ consensus_8283#0 CAATTATATTTTAGAATTATTCCTGTAAAAAGTGATTTTTTGCCTTTGGAATCCTTTTTA 360 consensus_8283#2 ------------------------------------------------------------ consensus_8283#1 ------------------------------------------------------------ consensus_8283#0 TTTATAGTGAGAAAAAAATATCTTTGCATTTGACTAAAAATTCATATCATAATCATCAGG 420 consensus_8283#2 ------------------------------------------------------------ consensus_8283#1 -------ATTTTCACTTGGAAGCGGAACTCACAGGATTTGAAGATAGCGGATTTTACCTT 53 consensus_8283#0 TAGTATCATGAGTAATATCTAACTTGTTTTTTTCCAACACTGACTTGTTAATTTTTTCAT 480 consensus_8283#2 ------------------------------------------------------------ consensus_8283#1 AAGTGGGTCGATGATACTCATTGTTTAGCTGTATTTTCTTCAAATGATGAAGCGAATCGT 113 consensus_8283#0 CTTTCTACTCTGTCTATCTGTGTACATGCGAACACTT-TATGCCTTTT--CGCTTGTTTA 537 consensus_8283#2 --------------------------TGCGAACACTT-TATGCCTTTT--CGCTTGTTTA 31 consensus_8283#1 GCATTGGCTCAAATATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTG 173 *** ** ** * *** * *** consensus_8283#0 GT--GTAAATTGAATATGGCA---TTAATAAATCATGGTACTTT-CTTCATCATGTGTAT 591 consensus_8283#2 GT--GTAAATTGAATATGGCA---TTAATAAATCATGGTACTTT-CTTCATCATGTGTAT 85 consensus_8283#1 GCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAAAAACGA 233 * **** ***** ** ** * * * * * *** * * ** * consensus_8283#0 CTATTT--GACATGTTT-----CTTGTTATTT--TTGCAAATCATCTAATTGT-ATTTTG 641 consensus_8283#2 CTATTT--GACATGTTT-----CTTGTTATTT--TTGCAAATCATCTAATTGT-ATTTTG 135 consensus_8283#1 CCAGTTACGACTAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCT 293 * * ** *** *** ** * * ** * ****** * * * ** consensus_8283#0 AATATGTTTCTCTCTCTTGGTCTATATGNGGGTCTATGGTAATTTGTTATTTTCTGGTGT 701 consensus_8283#2 AATATGTTTCTCTCTCTTGTTCGATATGAGGGTCTATGGTAATTTGAAATTTTTAGGTGT 195 consensus_8283#1 ACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGA 353 * ** ** **** ** * * * ** * * * * consensus_8283#0 TAAGCATGCTTTTTT-ATTTCACTAGGCGTCGG-ATTATTTTTTTGGTTTT----TACTG 755 consensus_8283#2 TAAGCATGCTTTTTTTATTTCACTAGGCGTCGG-ATTATTTTTTTGGTTTA----TCCTG 250 consensus_8283#1 GAAGCACGTGGTAAATTATACATGTGTTTTCCGCATTATTTTTTATGTTTAATTTTCGTG 413 ***** * * * ** * ** * ********** **** * ** consensus_8283#0 ANCTTAN-AACATANAANA-AT-------------------------------- 775 consensus_8283#2 TCAGTAGTAACTTAAAAAA-AT-------------------------------- 271 consensus_8283#1 ATACCATTGGTTTTTAGAACATTATCCAACGATAAGCAGAGATGGATAGTGGCT 467 * * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||