cluster # 8283

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Schistosoma mansoni
cluster # 8283 cluster # 8283 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8283#0 length = 775 sequences # 4

consensus_8283#1 length = 467 sequences # 1
consensus_8283#2 length = 271 sequences # 1

consensusID : consensus_8283#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 775
fasta sequence

                              [ATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAGGAACGACCAGTTACGAATAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGCTCGCGCGGAAGCTATTCGTCAGGCACAGAAATCTCTATGGGAAGACGATTAACATGTCAATTACAATTATATTTTAGAATTATTCCTGTAAAAAGTGA-TTTTTTGCCTTTGGAATCCTTTTTATTTATAGTGAGAAAAAAATATCTTTGCATTTGACTAAAAATTCATATCATAATCATCAGGTAGTATCATGAGTAATATCTAACTTGTTTTTTTCCAACACTGACTTGTTAATTTTTTCATCTTTCTACTCTGTCTATCTGTGTACATGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCTCTTGGTCTATATGNGGGTCTATGGTAATTTGTTATTTTCTGGTGTTAAGCATGCTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTTTACTGANCTTA-NAACATANAANAAT]

[-] EMBL CD126022             [ATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAGGAACGACCAGTTACGAATAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD078646             [                                                                                                                                                                            ATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGCTCGCGCGGAAGCTATTCGTCAGGCACAGAAATCTCTATGGGAAGACGATTAACATGTCAATTACAATTATATTTTAGAATTATTCCTGTAAAAAGTGA TTTTTTGCCTTTGGAATCCTTTTTATTTATAGTGAGAAAAAAATATCTTTGCATTTGACTAAAAATTCATATCATAATCATCAGGTAGTATCATGAGTAATATCTAACTTGTTTTTTTCCAACACTGACTTGTTAATTTTTTCATCTTTCTACTCTGTCTATCTGTGTACATGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCTCTTGGTCTATATGNGGGTCTATGGTAATTTGTTATTTTCTGGTGTTAAGCATGCTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTTTACTGANCTTA NAACATANAANA  ]
[-] EMBL CD137294             [                                                                                                                                                                                                                                                                                  TGGGAAGACGATTAACATGTCAAATACAATTATATTTTAGAATCATTCCTGTAAAAAGTGATTTTTTTGCCTTTGGAATCCTTTTTATTTATAGTGAGAAAAAAATATCTTTGCATTTGACTAAAAATTCATATCATAATCATCAGGTAGTATCATGAGTAATATCTAACTTGTTCTTTTCCAACACTGACTTGTTAATTTTTTCATCTTTCTACTCTGTCTATCTGTGTACATGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCT                                                                                                                        ]
[-] EMBL CD073110             [                                                                                                                                                                                                                                                                                                                                                                                       AAAATATCTTGGCATTTGACTAAAAATTCATATCATAATCATCAGGTAGTATCATGAGTAATATCTAACTTGTTTTTTTCCAACACTGACTTGTTAATTTTTTCATCTTTCTACTCTGTCTATCTGTGTACATGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTTAAATGAATATGGCATTAATAAATCATGGGACTTTTTTCATCAAGGGGATCTATTTGACAAGTTTTTTGTTAATTTTGCAAATCATCCAAATGTATTTTGAAAAAGGTTTTCTCTCCTGTTCCAAAAGTGGGTCTATGGTAATTTGTTATTTTCTGGTGTTAAGCATGCTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTTTACTGAACTTAGAAACATAAAAAAAT]




>consensus_8283#0
ATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAA
GATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAGGAACGACCAGTTACGAATAG
TTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATC
TCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGCTCG
CGCGGAAGCTATTCGTCAGGCACAGAAATCTCTATGGGAAGACGATTAACATGTCAATTA
CAATTATATTTTAGAATTATTCCTGTAAAAAGTGATTTTTTGCCTTTGGAATCCTTTTTA
TTTATAGTGAGAAAAAAATATCTTTGCATTTGACTAAAAATTCATATCATAATCATCAGG
TAGTATCATGAGTAATATCTAACTTGTTTTTTTCCAACACTGACTTGTTAATTTTTTCAT
CTTTCTACTCTGTCTATCTGTGTACATGCGAACACTTTATGCCTTTTCGCTTGTTTAGTG
TAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGAC
ATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCTCTTG
GTCTATATGNGGGTCTATGGTAATTTGTTATTTTCTGGTGTTAAGCATGCTTTTTTATTT
CACTAGGCGTCGGATTATTTTTTTGGTTTTTACTGANCTTANAACATANAANAAT

consensusID : consensus_8283#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [ATTTTCACTTGGAAGCGGAACTCACAGGATTTGAAGATAGCGGATTTTACCTTAAGTGGGTCGATGATACTCATTGTTTAGCTGTATTTTCTTCAAATGATGAAGCGAATCGTGCATTGGCTCAAATATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAAAAACGACCAGTTACGACTAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGGTAAATTATACATGTGTTTTCCGCATTATTTTTTATGTTTAATTTTCGTGATACCATTGGTTTTTAGAACATTATCCAACGATAAGCAGAGATGGATAGTGGCT]

[-] EMBL CD093335             [ATTTTCACTTGGAAGCGGAACTCACAGGATTTGAAGATAGCGGATTTTACCTTAAGTGGGTCGATGATACTCATTGTTTAGCTGTATTTTCTTCAAATGATGAAGCGAATCGTGCATTGGCTCAAATATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAAAAACGACCAGTTACGACTAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGGTAAATTATACATGTGTTTTCCGCATTATTTTTTATGTTTAATTTTCGTGATACCATTGGTTTTTAGAACATTATCCAACGATAAGCAGAGATGGATAGTGGCT]




>consensus_8283#1
ATTTTCACTTGGAAGCGGAACTCACAGGATTTGAAGATAGCGGATTTTACCTTAAGTGGG
TCGATGATACTCATTGTTTAGCTGTATTTTCTTCAAATGATGAAGCGAATCGTGCATTGG
CTCAAATATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTA
AGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAAAAACGACCAGTTA
CGACTAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAA
TTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCAC
GTGGTAAATTATACATGTGTTTTCCGCATTATTTTTTATGTTTAATTTTCGTGATACCAT
TGGTTTTTAGAACATTATCCAACGATAAGCAGAGATGGATAGTGGCT

consensusID : consensus_8283#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [TGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCTCTTGTTCGATATGAGGGTCTATGGTAATTTGAAATTTTTAGGTGTTAAGCATGCTTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTATCCTGTCAGTAGTAACTTAAAAAAAT]

[-] EMBL CD076877             [TGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATCATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCATCTAATTGTATTTTGAATATGTTTCTCTCTCTTGTTCGATATGAGGGTCTATGGTAATTTGAAATTTTTAGGTGTTAAGCATGCTTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTGGTTTATCCTGTCAGTAGTAACTTAAAAAAAT]




>consensus_8283#2
TGCGAACACTTTATGCCTTTTCGCTTGTTTAGTGTAAATTGAATATGGCATTAATAAATC
ATGGTACTTTCTTCATCATGTGTATCTATTTGACATGTTTCTTGTTATTTTTGCAAATCA
TCTAATTGTATTTTGAATATGTTTCTCTCTCTTGTTCGATATGAGGGTCTATGGTAATTT
GAAATTTTTAGGTGTTAAGCATGCTTTTTTTATTTCACTAGGCGTCGGATTATTTTTTTG
GTTTATCCTGTCAGTAGTAACTTAAAAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8283#0      ATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTGGCTAGTAAGTTGAA 60
consensus_8283#2      ------------------------------------------------------------
consensus_8283#1      ------------------------------------------------------------
                                                                                  

consensus_8283#0      GATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAGGAACGACCAGTTACGAATAG 120
consensus_8283#2      ------------------------------------------------------------
consensus_8283#1      ------------------------------------------------------------
                                                                                  

consensus_8283#0      TTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCTACTAAAATTAAATC 180
consensus_8283#2      ------------------------------------------------------------
consensus_8283#1      ------------------------------------------------------------
                                                                                  

consensus_8283#0      TCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGAGAAGCACGTGCTCG 240
consensus_8283#2      ------------------------------------------------------------
consensus_8283#1      ------------------------------------------------------------
                                                                                  

consensus_8283#0      CGCGGAAGCTATTCGTCAGGCACAGAAATCTCTATGGGAAGACGATTAACATGTCAATTA 300
consensus_8283#2      ------------------------------------------------------------
consensus_8283#1      ------------------------------------------------------------
                                                                                  

consensus_8283#0      CAATTATATTTTAGAATTATTCCTGTAAAAAGTGATTTTTTGCCTTTGGAATCCTTTTTA 360
consensus_8283#2      ------------------------------------------------------------
consensus_8283#1      ------------------------------------------------------------
                                                                                  

consensus_8283#0      TTTATAGTGAGAAAAAAATATCTTTGCATTTGACTAAAAATTCATATCATAATCATCAGG 420
consensus_8283#2      ------------------------------------------------------------
consensus_8283#1      -------ATTTTCACTTGGAAGCGGAACTCACAGGATTTGAAGATAGCGGATTTTACCTT 53
                                                                                  

consensus_8283#0      TAGTATCATGAGTAATATCTAACTTGTTTTTTTCCAACACTGACTTGTTAATTTTTTCAT 480
consensus_8283#2      ------------------------------------------------------------
consensus_8283#1      AAGTGGGTCGATGATACTCATTGTTTAGCTGTATTTTCTTCAAATGATGAAGCGAATCGT 113
                                                                                  

consensus_8283#0      CTTTCTACTCTGTCTATCTGTGTACATGCGAACACTT-TATGCCTTTT--CGCTTGTTTA 537
consensus_8283#2      --------------------------TGCGAACACTT-TATGCCTTTT--CGCTTGTTTA 31
consensus_8283#1      GCATTGGCTCAAATATCAGGACTTTTCATGAAGGCTCGTAAAATTAACGACGCCTCTTTG 173
                                                   ***  **  **    *     *** * *** 

consensus_8283#0      GT--GTAAATTGAATATGGCA---TTAATAAATCATGGTACTTT-CTTCATCATGTGTAT 591
consensus_8283#2      GT--GTAAATTGAATATGGCA---TTAATAAATCATGGTACTTT-CTTCATCATGTGTAT 85
consensus_8283#1      GCTAGTAAGTTGAAGATTGCTCGTTCACCTGGTGACTGGACTATGCCGTATAAAAAACGA 233
                      *   **** ***** ** **    * *     * *  * *** * *   ** *       

consensus_8283#0      CTATTT--GACATGTTT-----CTTGTTATTT--TTGCAAATCATCTAATTGT-ATTTTG 641
consensus_8283#2      CTATTT--GACATGTTT-----CTTGTTATTT--TTGCAAATCATCTAATTGT-ATTTTG 135
consensus_8283#1      CCAGTTACGACTAGTTCAACAGCTCGAAGACTAATTTCCAATCATTTGGGTATTGTTCCT 293
                      * * **  ***  ***      ** *     *  ** * ****** *   * *  **   

consensus_8283#0      AATATGTTTCTCTCTCTTGGTCTATATGNGGGTCTATGGTAATTTGTTATTTTCTGGTGT 701
consensus_8283#2      AATATGTTTCTCTCTCTTGTTCGATATGAGGGTCTATGGTAATTTGAAATTTTTAGGTGT 195
consensus_8283#1      ACTAAAATTAAATCTCCTGAGGAAACTATGAAAGAGGAACAAGATAAAGCTCTCTTACGA 353
                      * **   **   **** **    *  *  *          **  *     * *     * 

consensus_8283#0      TAAGCATGCTTTTTT-ATTTCACTAGGCGTCGG-ATTATTTTTTTGGTTTT----TACTG 755
consensus_8283#2      TAAGCATGCTTTTTTTATTTCACTAGGCGTCGG-ATTATTTTTTTGGTTTA----TCCTG 250
consensus_8283#1      GAAGCACGTGGTAAATTATACATGTGTTTTCCGCATTATTTTTTATGTTTAATTTTCGTG 413
                       ***** *   *      * **   *   ** * **********  ****     *  **

consensus_8283#0      ANCTTAN-AACATANAANA-AT-------------------------------- 775
consensus_8283#2      TCAGTAGTAACTTAAAAAA-AT-------------------------------- 271
consensus_8283#1      ATACCATTGGTTTTTAGAACATTATCCAACGATAAGCAGAGATGGATAGTGGCT 467
                           *      *  *  * **