cluster # 8284

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Schistosoma mansoni
cluster # 8284 cluster # 8284 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8284#0 length = 701 sequences # 5

consensus_8284#1 length = 316 sequences # 1

consensusID : consensus_8284#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 701
fasta sequence

                              [AAAAAGATAGAACTGGTATATATGAAGCTGTAGCAACAAATCCATTAGGTAGTTGTTCTACCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAATTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACATTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACACCAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCACCACAATCATTGGCTACAGTTCAATTATCTTTATCACCAGTACGATTTCAAAGAGAAACATCGGCTCCACCATCACAATATTACTTGACAAGACATCATTTACAAATAAGACCAAGACAGCCGACACCACCAATT]

[-] EMBL CD178568             [AAAAAGATAGAACTGGTATATATGAAGCTGTAGCAACAAATCCATTAGGTAGTTGTTCTACCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAATTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACATTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACACCAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATA                                                                                                                                                                                                                                                         ]
[+] EMBL CD121914             [                            TGTAGCAACAAATCCATTAGGTAGTTGTTCTACCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAATTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACATTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACACCAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACA                                                                                                                                                                                                                                                            ]
[+] EMBL CD121977             [                            TGTAGCAACAAATCCATTAGGTAGTTGTTCTACCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAATTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACATTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACACCAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTT                                                                                                                                                                                                                                                                       ]
[+] EMBL CD166416             [                                                                                                                                                                                                                                                      TATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGCTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCACCACAATCATTGGCTACAGTTCAATTATCTTTATCACCAGTACGATTTCAAAGAGAAACATCGGCTCCACCATCACAATATTACTTGACAAGACATCATTTACAAATAAGACCAAGACAGCCGACACCACCAATT]
[+] EMBL CD189590             [                                                                                                                                                                                                                                                                                                                                     TCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCACCACAATCATTGGCTACAGTTCAATTATCTTTATCACCAGTACGATTTCAAAGAGAAACATCGGCTCCACCATCACAATATTACTTGACAAGACATCATTT                                  ]




>consensus_8284#0
AAAAAGATAGAACTGGTATATATGAAGCTGTAGCAACAAATCCATTAGGTAGTTGTTCTA
CCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAA
TTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACA
TTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACAC
CAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTA
TTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAAT
CATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCAC
TTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTT
TAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCAC
CGGCAAGTACAGCTCCAATCATTTCACCACAATCATTGGCTACAGTTCAATTATCTTTAT
CACCAGTACGATTTCAAAGAGAAACATCGGCTCCACCATCACAATATTACTTGACAAGAC
ATCATTTACAAATAAGACCAAGACAGCCGACACCACCAATT

consensusID : consensus_8284#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [GAATAATTATCAGACCGGATGATCAACGTTATGCTATTGTGCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCTTCAGCACAGGTGAC]

[-] EMBL CD121800             [GAATAATTATCAGACCGGATGATCAACGTTATGCTATTGTGCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCTTCAGCACAGGTGAC]




>consensus_8284#1
GAATAATTATCAGACCGGATGATCAACGTTATGCTATTGTGCAAGGACCTGGACCTAATG
ATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAG
CTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTC
AAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGAC
AAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTT
CTTCAGCACAGGTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8284#0      AAAAAGATAGAACTGGTATATATGAAGCTGTAGCAACAAATCCATTAGGTAGTTGTTCTA 60
consensus_8284#1      ------------------------------------------------------------
                                                                                  

consensus_8284#0      CCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAA 120
consensus_8284#1      ------------------------------------------------------------
                                                                                  

consensus_8284#0      TTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACA 180
consensus_8284#1      ------------------------------------------------------------
                                                                                  

consensus_8284#0      TTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACAC 240
consensus_8284#1      ------------------------------------------------------------
                                                                                  

consensus_8284#0      CAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTA 300
consensus_8284#1      ------------------------GAATAATTATCAGACCGGATGATCAACGTTATGCTA 36
                                              ************************************

consensus_8284#0      TTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAAT 360
consensus_8284#1      TTGTGCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAAT 96
                      ***  *******************************************************

consensus_8284#0      CATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCAC 420
consensus_8284#1      CATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCAC 156
                      ************************************************************

consensus_8284#0      TTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTT 480
consensus_8284#1      TTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTT 216
                      ************************************************************

consensus_8284#0      TAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCAC 540
consensus_8284#1      TAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCAC 276
                      ************************************************************

consensus_8284#0      CGGCAAGTACAGCTCCAATCATTTCACCACAATCATTGGCTACAGTTCAATTATCTTTAT 600
consensus_8284#1      CGGCAAGTACAGCTCCAATCATTTCTTCAGCACAGGTGAC-------------------- 316
                      *************************  **  *    ** *                    

consensus_8284#0      CACCAGTACGATTTCAAAGAGAAACATCGGCTCCACCATCACAATATTACTTGACAAGAC 660
consensus_8284#1      ------------------------------------------------------------
                                                                                  

consensus_8284#0      ATCATTTACAAATAAGACCAAGACAGCCGACACCACCAATT 701
consensus_8284#1      -----------------------------------------