cluster # 8285

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Schistosoma mansoni
cluster # 8285 cluster # 8285 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8285#0 length = 991 sequences # 3

consensus_8285#1 length = 524 sequences # 2
consensus_8285#2 length = 177 sequences # 1

consensusID : consensus_8285#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 991
fasta sequence

                              [CCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCGTTTATTGCCGTCGATCGATTCATCATACGATTTTCATTATTATTATTATCATTATTAGCTACCGACTGCCAAATTATTAATCTTCCATCTTGACCACATGAAGCGATTAATTGTCGTGAAATATTCAAGCTTGGACACCAAGCAACATCACGTACCCAATCGGTATGACCATCTAGACGAGTTTCTTCGATCCATTCTGAATTTCCAGAAGAAGTATCTTCACGCCATATTTTAATCAAAGAATCACACCCACCAGAAACTAGTCTTTTGATAGGCGGAATCATAGTATTTGTTGATGTTGTTGTTGCCAACGTCGGATTGAATATAAATTCAGCATTTATGGAGGGTGCCCAAGACACGCTATTAACACCAACGGAGTGTGCCTCTGGGATTCGAAAGGCACGCCAAGAGTTTGTTTCGTCTGATATAAGGATGGAAATTGTCCCATCTGAACTTGCACATGCTAGCATTAGTCCATAAGAATGAGGAGCCCAACAAACGCAATTGACTGAACTAGCATGTTCAGAATATTCAAAGACTTTTCCCCATCGTCCATTGATTTCTTGCCAGATAATCACCTTACGATCATAACCGCAAGAGGCCAGTAAACTCCCATACATAGGATGTGACCAACTTAAACTCCAAACAGGTCCTTGATGATCTCGTAAATGAGCTATAAGAACTTGTTTCTTGTTACGGACATCAAATATTTTAACTGAATGGTCAGACGAAGCTGTTGCTAGAGTTGTTCCATAGTAGTCCAACTGAGCATCATGTATCATATCTTCATGGTTAGTATCGATAGTTTGAATGCCAGAAA]

[+] EMBL CD062217             [CCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCGTTTATTGCCGTCGATCGATTCATCATACGATTTTCATTATTATTATTATCATTATTAGCTACCGACTGCCAAATTATTAATCTTCCATCTTGACCACATGAAGCGATTAATTGTCGTGAAATATTCAAGCTTGGACACCAAGCAACATCACGTACCCAATCGGTATGACCATCTAGACGAGTTTCTTCGATCCATTCTGAATTTCCAGAAGAAGTATCTTCACGCCATATTTTAATCAAAGAATCACACCCACCAGAAACTAGTCTTTTGATAGGCGGAATCATAGTATTTGTTGATGTTGTTGTTGCCAACGTCGGATTGAATATAAATTCAGCATTTATGGAGGGTGCCCAAGACACGCTATTAACACCAACGGAGTGTGCCTCTGGGATTCGAAAGGCACGCCAAGAGTTTGTT                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AI068241             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGAGGTTGCCCAAGACACGCTATTAACACCAACGGAGTGTGCCTCTGGGATTCGAAAGGCACGCCAAGAGTTTGTTTCGTCTGATATAAGGATGGAAATTGTCCCATCTGAACTTGCACATGCTAGCATTAGTCCATAAGAATGAGGAGCCCAACAAACGCAATTGACTGAACTAGCATGTTCAGAATATTCAAAGACTTTTCCCCATCGTCCATTGATTTCTTGCCAGATAATCACCTTACGATCATAACCGCAAGAGGCCAGTAAACTCCCATACATAGGATGTGACCAACTTAAACTCCAAACAGGTCCTTGATGATCTCGTAAATGAGCTATAAGAACTTGTTTCTTGTTACGGACATCAAATATTTTAACTGAATGGTCAGACGAAGCTGTTGCTAGAGTTGTTCCATAGTAGTCCAACTGAGCATCATGTATCATATCTTCATGGTTAGTATCGATAGTTTGAATGCCAGAAA]
[-] EMBL AI068287             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACGCCAAGAGTTTGTTTCGTCTGATATAAGGAT GAAATTGTCCCATCTGAACTTGCACATGCTAGCATTAGTCCATAAGAATGAGGAGCCCAACANACGCAATTGACTGAACTAGCATGTTCAGAATATTCAAAGACTTTTCCCCATCGTCCATTGATTTCTTGCCAGATAATCACCTTACGATCATAACCGCAAGAGGCCAGTAAACTCCCATACATAGGATGTGACCAACTTAAACTCCAAACAGGTCCTTGATGATCTCGTAAATGAGCTATAAGAACTTGTTTCTTGTTACGGACATCAAATATTTTAACTGAATGGTCAGACGAAGCTGTTGCTAGAGTTGTTCCATAGTAGTCCAACTGAGCATCATGTATCATATCTTCATGGTTAGTATCGATAGTTTGAATGCCAGAAA]




>consensus_8285#0
CCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGA
TAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTC
GATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCGTTTATTGCC
GTCGATCGATTCATCATACGATTTTCATTATTATTATTATCATTATTAGCTACCGACTGC
CAAATTATTAATCTTCCATCTTGACCACATGAAGCGATTAATTGTCGTGAAATATTCAAG
CTTGGACACCAAGCAACATCACGTACCCAATCGGTATGACCATCTAGACGAGTTTCTTCG
ATCCATTCTGAATTTCCAGAAGAAGTATCTTCACGCCATATTTTAATCAAAGAATCACAC
CCACCAGAAACTAGTCTTTTGATAGGCGGAATCATAGTATTTGTTGATGTTGTTGTTGCC
AACGTCGGATTGAATATAAATTCAGCATTTATGGAGGGTGCCCAAGACACGCTATTAACA
CCAACGGAGTGTGCCTCTGGGATTCGAAAGGCACGCCAAGAGTTTGTTTCGTCTGATATA
AGGATGGAAATTGTCCCATCTGAACTTGCACATGCTAGCATTAGTCCATAAGAATGAGGA
GCCCAACAAACGCAATTGACTGAACTAGCATGTTCAGAATATTCAAAGACTTTTCCCCAT
CGTCCATTGATTTCTTGCCAGATAATCACCTTACGATCATAACCGCAAGAGGCCAGTAAA
CTCCCATACATAGGATGTGACCAACTTAAACTCCAAACAGGTCCTTGATGATCTCGTAAA
TGAGCTATAAGAACTTGTTTCTTGTTACGGACATCAAATATTTTAACTGAATGGTCAGAC
GAAGCTGTTGCTAGAGTTGTTCCATAGTAGTCCAACTGAGCATCATGTATCATATCTTCA
TGGTTAGTATCGATAGTTTGAATGCCAGAAA

consensusID : consensus_8285#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 524
fasta sequence

                              [CATTAACAGTGGAAGCAAAGAAAGGCAGAATGCATAGATTACAATTCGAAATAAAAAGCATTGATGACCTAGTTGTGTACAGGACAAAGAACCAAGAGAATCGACACACGAATACATATACATAAGTATATTCATGTATACACACACATCCTACTGGGTAACTGTTAAGCAGCAGCCAATTGTGTGGTAGGTTGATCTGACGTTTGACTATTCCCTTCAGTTCCAATTAAACCGGATGCCTCATGAGCACCACGTGCAATTTCACTCAAAGCAATCCAGGTTCCTTCTAAATTTTCCTTCCAAAGTGTAACCTTATTATCTCCTCCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCG-TTATTGCCGTCGATCGCCTCGTGCCGAAT]

[-] EMBL CD077373             [CATTAACAGTGGAAGCAAAGAAAGGCAGAATGCATAGATTACAATTCGAAATAAAAAGCATTGATGACCTAGTTGTGTACAGGACAAAGAACCAAGAGAATCGACACACGAATACATATACATAAGTATATTCATGTATACACACACATCCTACTGGGTAACTGTTAAGCAGCAGCCAATTGTGTGGTAGGTTGATCTGACGTTTGACTATTCCCTTCAGTTCCAATTAAACCGGATGCCTCATGAGCACCACGTGCAATTTCACTCAAAGCAATCCAGGTTCCTTCTAAATTTTCCTTCCAAAGTGTAACCTTATTATCTCCTCCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCG TTATTGCCGTCGATCGCCTCGTGCCG   ]
[-] EMBL CD077644             [                                                                                                                                                                                                   TCTGACGTTTGACTATCCNNTTCAGTTCCAATTAAACCGGATGCCTCATGAGCACCACGTGCAATTTCACTCAAAGCAATCCAGGTTCCTTCTAAATTTTCCTTCCAAAGTGTAACCTTATTATCTCCTCCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCGTTTATTGC       CGCCTCGTGCCGAAT]




>consensus_8285#1
CATTAACAGTGGAAGCAAAGAAAGGCAGAATGCATAGATTACAATTCGAAATAAAAAGCA
TTGATGACCTAGTTGTGTACAGGACAAAGAACCAAGAGAATCGACACACGAATACATATA
CATAAGTATATTCATGTATACACACACATCCTACTGGGTAACTGTTAAGCAGCAGCCAAT
TGTGTGGTAGGTTGATCTGACGTTTGACTATTCCCTTCAGTTCCAATTAAACCGGATGCC
TCATGAGCACCACGTGCAATTTCACTCAAAGCAATCCAGGTTCCTTCTAAATTTTCCTTC
CAAAGTGTAACCTTATTATCTCCTCCAGATACCGCTAAAATATTCCCAGTTACAGACCAT
GAAACATTCCAAACAACATCGGGATAAGTATATAAGATGGTTGGACGCCAAAATGTAGAA
TATTGTGTTGATTGAAAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTA
TTGTTATTATTATCGTTATTGCCGTCGATCGCCTCGTGCCGAAT

consensusID : consensus_8285#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [TCTGGAGGAGATAATAAGGTTACACTTGGGGAAGGAAAATTTAGAAGGAACCTGGATTGGTTNGAGTGAAATNGCACGTGGNGNTCATGANGCATCCGGTTTANTTGGAACTGAAGGGAATAGTCAAACGTCANANCACCCNACCACACAGTTGGGTGNTGCTNAACAGCCACCCAG]

[+] EMBL SM6891               [TCTGGAGGAGATAATAAGGTTACACTTGGGGAAGGAAAATTTAGAAGGAACCTGGATTGGTTNGAGTGAAATNGCACGTGGNGNTCATGANGCATCCGGTTTANTTGGAACTGAAGGGAATAGTCAAACGTCANANCACCCNACCACACAGTTGGGTGNTGCTNAACAGCCACCCAG]




>consensus_8285#2
TCTGGAGGAGATAATAAGGTTACACTTGGGGAAGGAAAATTTAGAAGGAACCTGGATTGG
TTNGAGTGAAATNGCACGTGGNGNTCATGANGCATCCGGTTTANTTGGAACTGAAGGGAA
TAGTCAAACGTCANANCACCCNACCACACAGTTGGGTGNTGCTNAACAGCCACCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8285#0      CCAGATACCGCTAAAATATTCCCAGTTACAGACCATGAAACATTCCAAACAACATCGGGA 60
consensus_8285#1      ------------------------------------------------------------
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      TAAGTATATAAGATGGTTGGACGCCAAAATGTAGAATATTGTGTTGATTGAAAATCTTTC 120
consensus_8285#1      ------------------------------------------------------------
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      GATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTATTATTATCGTTTATTGCC 180
consensus_8285#1      ------------------------------------------------------------
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      GTCGATCGATTCATCATACGATTTTCATTATTATTATTATCATTATTAGCTACCGACTGC 240
consensus_8285#1      ------------------------------------------------------------
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      CAAATTATTAATCTTCCATCTTGACCACATGAAGCGATTAATTGTCGTGAAATATTCAAG 300
consensus_8285#1      ------------------------------------------------------------
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      CTTGGACACCAAGCAACATCACGTACCCAATCGGTATGACCATCTAGACGAGTTTCTTCG 360
consensus_8285#1      ------------------------------------------------------------
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      ATCCATTCTGAATTTCCAGAAGAAGTATCTTCACGCCATATTTTAATCAAAGAATCACAC 420
consensus_8285#1      ------------------------------------------------------------
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      CCACCAGAAACTAGTCTTTTGATAGGCGGAAT-CATAG--TATTTGTTGATGTTGTTGTT 477
consensus_8285#1      -CATTAACAGTGGAAGCAAAGAAAGGCAGAATGCATAGATTACAATTCGAAATAAAAAGC 59
consensus_8285#2      -----------------TCTGGAGGAGATAAT-AAGGTTACACTTGGGGAAGGAAAATTT 42
                                          *   *    ***  *      *      **          

consensus_8285#0      GCCAACG-TCGGATTGAATATAAATTCAGCATTTATGGAGGGTGCCCAAGACACGCTATT 536
consensus_8285#1      ATTGATGACCTAGTTGTGTACAGGACAAAGA---ACCAAGAGAATC---GACACACGAAT 113
consensus_8285#2      AGAAGGAACCTGGATTGGTTNGAGTGAAATNGC-ACGTGGNGNTCATGANGCATCCGGTT 101
                               *    *   *        *      *    * *         **  *   *

consensus_8285#0      AACACC--AACGGAGTGTGCCTCTGGG-ATTCGAAAGGCACGCCAAGAGTTTGTTTCGTC 593
consensus_8285#1      ACATAT--ACATAAGTATATTCATGTATACACACACATCCTACTGGGTAACTGTTAAGCA 171
consensus_8285#2      TANTTGGAACTGAAGGGAATAGTCAAACGTCANANCACCCNACCACACAGTTGGGTGNTG 161
                              *    **                       *   *        **       

consensus_8285#0      TGATATAAGGATGGAAATTGTCCCATCTGAACTTGCACATGCTAGCATTAGT-CCATAAG 652
consensus_8285#1      GCAGCCAATTGTGTGG-TAGGTTGATCTGACGTTTGAC-TATTCCCTTCAGTTCCAATTA 229
consensus_8285#2      CTNAACAGCCACCCAG-------------------------------------------- 177
                            *                                                     

consensus_8285#0      AATGAGGAGCCCAACAAACGCAATTGACTGAACTAGCATGTTCAGAATATTCAAAGACTT 712
consensus_8285#1      AACCGGATGCCTCATGAGCACCAC-----GTGCAATTTCACTCAAAGCAATCCAGGTTCC 284
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      TTCCCCATCGTCCATTGATTTCTTGCCAGATAATCACCTTACGATCATAACCGCAAGAGG 772
consensus_8285#1      TTCTAAAT----------TTTCCTTCCAAAGTGTAACCTTATTATCTCCTCCAGATACCG 334
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      CCAGTAAACTCCCATACATAGGATGTGACCAACTTAAACTCCAAACAGGTCCTTGATGAT 832
consensus_8285#1      CTAAAATATTCCCAGTTACAGACCATGA--AAC----ATTCCAAACAACATCGGGATAA- 387
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      CTCGTAAATGAGCTATAAGAACTTGTTTCTTGTTACGGACATCAAATATTTTAACTGAAT 892
consensus_8285#1      ---GTA-------TATAAGA--TGGTTGGACGCCA-AAATGTAGAATATTGTG-TTGATT 433
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      GGTCAGACGAAGCTGTTGCTAGAGTTGTTCCATAGTAGTCCAACTGAGCATCATGTATCA 952
consensus_8285#1      GA------AAATCTTTCGATTCTACCAACTCATTAGAACTTGGATTTTTATTATTGTTAT 487
consensus_8285#2      ------------------------------------------------------------
                                                                                  

consensus_8285#0      TATCTTCATGGTTAGTATCGATAGTTTGAATGCCAGAAA 991
consensus_8285#1      TATTATCGTTATTGCCGTCGATCGCCTCG-TGCCGAAT- 524
consensus_8285#2      ---------------------------------------