These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 651 fasta sequence [CGATGGTGTATTTAAATTTACTGGAAAACAGAATTCTATAGGAAACTTTCAAAGTCCAACAGTGAAATTATTTCAGTTATCCTATAGACGTCGTTATGAATTATTTTCGAATAAACATAAAGAATTCAATTTCTATTATCAGGATTTAATTGGTATTGCAGAACGTTTATCTACAACTTTATCTGGTGATAAAATTGATGATAATAAACCTCAATAAACATCTAGATTACTTTCTGTTCAATCACTTCATGCACCGGGTGATTTCATTATGGATAATAATAATAATCATCATCCCAACCATACTACTAATAATACTACTATCATTAATCATTCTGTAGGAATGATACGTTTAATTGCTTTTATATGGAAATTTTCTGAATCTATTATTCGTATTGGTCTATTTGATTTGGATCGATGGTATCATGCCCAAATGCCAACTTATATCAGATCTGATGACACGTTTGTCTCTATTTTTGATGCATTAATTCCAAATCAAAAAGTACAGTTATTGCACACCTATTTAATTGAATCAAGTTTAATGTCATTTTGGAGTCGTATCGTTCAACGTGAATCAAATTTAATTAAATCATGTCAACTATATCCTATTCAATTCAAACCTAATCATATTAATCATTATCATTATAAAAGATC] [+] EMBL CD067301 [CGATGGTGTATTTAAATTTACTGGAAAACAGAATTCTATAGGAAACTTTCAAAGTCCAACAGTGAAATTATTTCAGTTATCCTATAGACGTCGTTATGAATTATTTTCGAATAAACATAAAGAATTCAATTTCTATTATCAGGATTTAATTGGTATTGCAGAACGTTTATCTACAACTTTATCTGGTGATAAAATTGATGATAATAAACCTCAATAAACATCTAGATTACTTTCTGTTCAATCACTTCATGCACCGGGTGATTTCATTATGGATAATAATAATAATCATCATCCCAACCATACTACTAATAATACTACTATCATTAATCATTCTGTAGGAATGATACGTTTAATTGCTTTTATATGGAAATTTTCTGAATCTATTATTCGTATTGGTCTATTTGATTTGGATCGATGGTATCATGCCCAAATGCCAACTTATATCAAATCTGATGACACGTTTGTCTCTATTTTTGA ] [+] EMBL CD066916 [CGATGGTGTATTTAAATTTACTGGAAAACAGAATTCTATAGGAAACTTTCAAAGTCCAACAGTGAAATTATTTCAGTTATCCTATAGACGTCGTTATGAATTATTTTCAAATAAACATAAAGAATTCAATTTCTATTATCAGGATTTAATTGGTATTGCAGAACGTTTATCTACAACTTTATCTGGTGATAAAATTGATGATAATAAACCTCAATAAACATCTAGATTACTTTCTGTTCAATCACTTCATGCACCGGGTGATTTCATTATGGATAATAATAATAATCATCATCCCAACCATACTACTAATAATACTACTATCATTAATCATTCTGTAGGAATGATACGTTTAATTGCTTTTATATGGAAATTTTCTGAATCTATTATTCGTATTGGTCTATTCGATTTGGATCGATGGTATCATGCCCAAATGCCAACTTATATCAGA ] [-] EMBL CD067409 [ TAATAATAATCATCATCCCAACCATACTACTAATAATACTACTATCATTAATCATTCTGTAGGAATGATACGTTTAATTGCTTTTATATGGAAATTTTCTGAATCTATTATTCGTATTGGTCTATTTGATTTGGATCGATGGTATCATGCCCAAATGCCAACTTATATCAGATTTGATGACACGTTTGTCTCTATTTTTGATGCATTAATTCCAAATCAAAAAGTACAGTTATTGCACACCTATTTAATTGAATCAAGTTTAATGTCATTTTGGAGTCGTATCGTTCAACGTGAATCAAATTTAATTAAATCATGTCAACTATATCCTATTCAATTCAAACCTAATCATATTAATCATTATCATTATAAAAGATC] [-] EMBL CD066846 [ CTGAATCTATTATTCGTATTGGTCTATTCGATTTGGATCGATGGTATCATGCCCAAATGCCAACTTATATCAGATCTGATGACACGTTTGTCTCTATTTTTGATGCATTAATTCCAAATCAAAAAGTACAGTTATTGCACACCTATTTAATTGAATCGAGTTTAATGTCATTTTGGAGTCGTATTGTTCAACGTGAATCAAATTTAATTAAATCATGTCAACTATATCCTATTCAATTCAAACCTAATCATATTAATCATTATCATTATAAAAGATC] consensusID : consensus_8292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [ATCTAGATAACTTTCTGTTCAATCACTTCATGCACCGGGTGATTTCATTATGGATAATAATAATAATCATCATCCCAACCATACTACTAATAATACTACTATCACTAATCATTCTGTAGGAATGATACGTTTAATTGCTTTTATATGGAAATTTTCTGAATCTATTATTCGTATTGGTCTATTTGATTTGGATCGATGGGTTCATGCCCAAATGAGTCCGACGCAGCAACCAATAAAAGAGGGGATCGCCCCCCTCGGTCCCGAGTTCATCACAAAAAGGGCAGTGCTTGCACCCCCTTTTAATTGAATCAAAGTTTAATGTCGGTTTGGAGTCGGATTGTTCAACGTGAATCAAATTTAATTAAATCATGTCAACTATATCCTAT] [-] EMBL CD116892 [ATCTAGATAACTTTCTGTTCAATCACTTCATGCACCGGGTGATTTCATTATGGATAATAATAATAATCATCATCCCAACCATACTACTAATAATACTACTATCACTAATCATTCTGTAGGAATGATACGTTTAATTGCTTTTATATGGAAATTTTCTGAATCTATTATTCGTATTGGTCTATTTGATTTGGATCGATGGGTTCATGCCCAAATGAGTCCGACGCAGCAACCAATAAAAGAGGGGATCGCCCCCCTCGGTCCCGAGTTCATCACAAAAAGGGCAGTGCTTGCACCCCCTTTTAATTGAATCAAAGTTTAATGTCGGTTTGGAGTCGGATTGTTCAACGTGAATCAAATTTAATTAAATCATGTCAACTATATCCTAT] consensusID : consensus_8292#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [TGATTGGCAATCATAACAAGAGACTGAAAGCGATGGTGTATTTAAATTTACTGGAAAACAGAATTCTATAGGAAACTTTCAAAGTCCAACAGTGAAATTATTTCAGTTATCCTATAGACGTCGTTATGAATTATTTTCAAATAAACATAAAGAATTCAATTTCTATTATCAGCCTCAGTTCTTCGATGGAATGATTTCACATATAAATCTGTCAGTGGTAAAACATTATCTTCAATCCCATCTGCTGGTGTCTACGTGTCAGCCTTAAGTTATATTCCACAACTTCAAGGTCTTGCTGTCGGCTTCAGTTTCGGTGGTTGGCAATTATGGTCATTGGATCGACTTAATAGTGGAATTTTGTTTGCGACAAGCTA] [-] EMBL CD196431 [TGATTGGCAATCATAACAAGAGACTGAAAGCGATGGTGTATTTAAATTTACTGGAAAACAGAATTCTATAGGAAACTTTCAAAGTCCAACAGTGAAATTATTTCAGTTATCCTATAGACGTCGTTATGAATTATTTTCAAATAAACATAAAGAATTCAATTTCTATTATCAGCCTCAGTTCTTCGATGGAATGATTTCACATATAAATCTGTCAGTGGTAAAACATTATCTTCAATCCCATCTGCTGGTGTCTACGTGTCAGCCTTAAGTTATATTCCACAACTTCAAGGTCTTGCTGTCGGCTTCAGTTTCGGTGGTTGGCAATTATGGTCATTGGATCGACTTAATAGTGGAATTTTGTTTGCGACAAGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8292#0 CGATGGTGTATTTAAATTTACTGGAAAACAGAATTCTATAGGAAACTTTCAAAGTCCAAC 60 consensus_8292#1 ------------------------------------------------------------ consensus_8292#2 ------------------------------------------------------------ consensus_8292#0 AGTGAAATTATTTCAGTTATCCTATAGACGTCGTTATGAATTATTTTCGAATAAACATAA 120 consensus_8292#1 ------------------------------------------------------------ consensus_8292#2 ------------------------------------------------------------ consensus_8292#0 AGAATTCAATTTCTATTATCAGGATTTAATTGGTATTGCAGAACGTTTATCTACAACTTT 180 consensus_8292#1 ------------------------------------------------------------ consensus_8292#2 ------------------------------------------------------------ consensus_8292#0 ATCTGGTGATAAAATTGATGATAATAAACCTCAATAAACATCTAGATTACTTTC-TGTTC 239 consensus_8292#1 ---------------------------------------ATCTAGATAACTTTC-TGTTC 20 consensus_8292#2 ------------------------------------------TGATTGGCAATCATAACA 18 * * * ** * consensus_8292#0 AATCACTTCATGCACCGGGTGATTTCATTATGGATAATAATAATAATCATCATCCCAACC 299 consensus_8292#1 AATCACTTCATGCACCGGGTGATTTCATTATGGATAATAATAATAATCATCATCCCAACC 80 consensus_8292#2 AGAGACTGAAAGCGATGGTGTATTTAAATTTACTGGAAAACAGAATTC--TATAGGAAAC 76 * *** * ** ** **** * * * * ** * * ** ** ** * consensus_8292#0 ATACTA---CTAATAATACTACTATCATTAATCATTCTGTAGGAATGATACGTTTAATTG 356 consensus_8292#1 ATACTA---CTAATAATACTACTATCACTAATCATTCTGTAGGAATGATACGTTTAATTG 137 consensus_8292#2 TTTCAAAGTCCAACAGTGAAATTATT-TCAGTTATCCTATAG--ACGTCGTTATGAATTA 133 * * * * ** * * * *** * * ** ** *** * * * **** consensus_8292#0 CTTTTATATGGAAATTTTCTGAATCTATTATTCGTATTGGTCTATTTGATTTGGATCGAT 416 consensus_8292#1 CTTTTATATGGAAATTTTCTGAATCTATTATTCGTATTGGTCTATTTGATTTGGATCGAT 197 consensus_8292#2 TTTTCAAATAAACATAAAG-AATTCAATTTCTATTATCAGCCTCAGTTCTTCGATGGAAT 192 *** * ** * ** * ** *** * *** * ** * ** * ** consensus_8292#0 GGTATCATGCCCAAATGCCAACTTATATCAGATCTGATGACACGTTTG-TCTCTATTTTT 475 consensus_8292#1 GGGTTCATGCCCAAATGA-GTCCGACGCAGCAACCAATAAAAGAGGGGATCGCCCCCCTC 256 consensus_8292#2 GATTTCACATATAAATCT-GTCAGTGGTAA-----AACATTATCTTCAATCCCATCTGCT 246 * *** **** * * * ** * consensus_8292#0 GAT-GCATTAATTCCAAATCAAA--AAGTACAGTTATTGCACACCTATTTAATTGAATCA 532 consensus_8292#1 GGT-CC--CGAGTTCATCACAAA--AAGGGCAGTGCTTGCACCCCCTTTTAATTGAATCA 311 consensus_8292#2 GGTGTCTACGTGTCAGCCTTAAGTTATATTCCACAACTTCAAGGTCTTGCTGTCGGCTTC 306 * * * * ** * * * ** * * * * consensus_8292#0 A-GTTTAATGTCATTTTGGAGTCGTATCGTTCAACGTGAATCAAATTTAATTAAATCATG 591 consensus_8292#1 AAGTTTAATGTCGGTTTGGAGTCGGATTGTTCAACGTGAATCAAATTTAATTAAATCATG 371 consensus_8292#2 A-GTTT--CGGTGGTTGGCAATTATGGTCATTGGATCGACTTAA---TAGTGGAATTTTG 360 * **** * ** * * * * ** * ** ** * *** ** consensus_8292#0 TCAACTATATCCTATTCAATTCAAACCTAATCATATTAATCATTATCATTATAAAAGATC 651 consensus_8292#1 TCAACTATATCCTAT--------------------------------------------- 386 consensus_8292#2 TTTGCGACAAGCTA---------------------------------------------- 374 * * * * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||