cluster # 8294

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Schistosoma mansoni
cluster # 8294 cluster # 8294 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8294#0 length = 626 sequences # 5

consensus_8294#1 length = 340 sequences # 1

consensusID : consensus_8294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 626
fasta sequence

                              [ACTGNTTTTTTTAACTTTTTTTTTACTTCGCAAAAGTCCTGTATATTTTTAAGTAAAGACACATTACGAGAGTTTAGAAGTGTTCAATCGTCCAATAAGTATATAAGTTCATTTATGTTTTTTTCAGTAACAATGCATTGAGCAAATTAACACTGATCGCAATGTTGGATATCAGTGAATAATCAAAATCCGATTTATAATTCGGCTTCATCTGGTATTTCGGAAGTAAAAGCTTCACGATTCTCATGGGCCCAAAAACCTTGGAGATCGATTAATATGTTTATTACCGTGTCACCCTTACCACAATTGATAAGGTCATCTAAGGT-GATGTAAT-GGGGATTCGCTGGTCGTACCATATCAAAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTGTCTTCTATT--CCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCAACATCAAGAATACGGAAAAGATAAGCAATTGCTTGCGGCTCATGTTTATTTTCCATAGCCCCACCCAGGTCTAAATAAGTTTTGTAGTCCATTTCACCTTCATAAGTTAGGCATTCTTGAAATACACGATCGAGAAATACGTCGGT]

[+] EMBL CD073774             [ACTGNTTTTTTTAACTTTTTTTTTACTTCGCAAAAGTCCTGTATATTTTTAAGTAAAGACACATTCCGAGAGTTTAGAAGTGTTCAATCGTCCAATAAGTATATAAGTTCATTTATGTTTTTTTCAGTAACAATGCATTGAGCAAATTAACACTGATCGCAATGTTGGATATCAGTGAATAATCAAAATCCGATTTATAATTCGGCTTCATCTGGTATTTCGGAAGTAAAAGCTTCACGATTCTCATGGGCCCAAAAACCTTGGAGATCGATTAATATGTTTATTACCGTGTCACCCTTACCACAATTGATAAGGTCATCTAAGGT GATGTAAT GGGGATTCGCTGGTCGTACCATATCAAAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTGTCTTCTATT  CCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCAACATCAAGAATACGGAAAAGATAAGCAATTGCTTGCGGCTCATGTTTATTTTCCATAGCC                                                                                      ]
[+] EMBL AI740270             [                                 AAGTCCTGTATATTTTTAAGTAAAGACACATTACGAGAGTTTAGAAGTGTTCAATCGTCCAATAAGTATATAAGTTCATTTATGTTTTTTTCAGTAACAATGCATTGAGCAAATTAACACTGATCGCAATGTTGGATATCAGTGAATAATCAAAATCCGATTTATAATTCGGCTTCATCTGGTATTTCGGAAGTAAAAGCTTCACGATTCTCATGGGCCCAAAAACCTTGGAGATCGATTAATATGTTTATTACCGTGTCACCCTTACCACAATTGATAAGGTCATCTAAGGTGGATGTAATGGGGGATTCGCTGGTCGTACCAT                                                                                                                                                                                                                                                                                ]
[-] EMBL CD079505             [                                  AGTCCTGTATATTTTTAAGTAAAGACACATTACGAGAGTTTAGAAGTGTTCAATCGTCCAATAAGTATATAAGTTCATTTATGTTTTTTTCAGTAACAATGCATTGAGCAAATTAACACTGATCGCAATGTTGGATATCAGTGAATAATCAAAATCCGATTTATAATTCGGCTTCATCTGGTATTTCGGAAGTAAAAGCTTCACGATTCTCATGGGCCCAAAAACCTTGGAGATCGATTAATATGTTTATTACCGTGTCACCCTTACCACAATTGATAAGGTCATCTAAGGT GATGTAAT GGGGATTCGCTGGTCGTACCATATCAAAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTGTCTTCTATT  CCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCAACATCAAGAATACGGAAAAGATAAGCAATTGCTTGCGGCTCATGTTTATTTTCCATAGCGCCAC                                                                                  ]
[+] EMBL CD187082             [                                                                                                                                                                                                                               AAGTAAAAGCTTCACGATTCTCATGGGCCCAAAAACCTTGGAGATCGATTAATATGTTTATTACCGTGTCACCCTTACCACAATTGATAAGGTCATCTAAGGT GATGTAAT GGGGATTCGCTGGTCGTACCATATCAAAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTGTCTTCTATT  CCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCAACATCAAGAATACGGAAAAGATAAGCAATTGCTTGCGGCTCATGTTTATTTTCCATAGCCAAAACCAGGTCTAAATAAGTTTTGTAGTCCATTTCACCTTCATAAGTTAGGCATTCTTGAAATACACGATCGAGAAATACGTCGGT]
[-] EMBL SM1247319            [                                                                                                                                                                                                                                AGTAAAAGCTTCACGATTCTCATGGGCCCAAAAACC TGGAGATCGATTAATATGTTTATTACCGTGTCACCCTTACCACAATTGATAAGGTCATCTAAGGT GATGTAAT GGGGATTCGCTGGTCGTACCATATCAAAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTGTCTTCWAATWWCCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCAACATCAAGAATACG   AAGATAAGCAATTGCTTGCGGCTCATGTTTATTTTCCAT                                                                                          ]




>consensus_8294#0
ACTGNTTTTTTTAACTTTTTTTTTACTTCGCAAAAGTCCTGTATATTTTTAAGTAAAGAC
ACATTACGAGAGTTTAGAAGTGTTCAATCGTCCAATAAGTATATAAGTTCATTTATGTTT
TTTTCAGTAACAATGCATTGAGCAAATTAACACTGATCGCAATGTTGGATATCAGTGAAT
AATCAAAATCCGATTTATAATTCGGCTTCATCTGGTATTTCGGAAGTAAAAGCTTCACGA
TTCTCATGGGCCCAAAAACCTTGGAGATCGATTAATATGTTTATTACCGTGTCACCCTTA
CCACAATTGATAAGGTCATCTAAGGTGATGTAATGGGGATTCGCTGGTCGTACCATATCA
AAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTG
TCTTCTATTCCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCA
ACATCAAGAATACGGAAAAGATAAGCAATTGCTTGCGGCTCATGTTTATTTTCCATAGCC
CCACCCAGGTCTAAATAAGTTTTGTAGTCCATTTCACCTTCATAAGTTAGGCATTCTTGA
AATACACGATCGAGAAATACGTCGGT

consensusID : consensus_8294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [GTCACCCTTACCACAATTGATAAGGTCATCTAAGGTGATGTAATGGGGATTCGCTGGTCGTACCATATCAAAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTGTCTTCTATTCCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCAACATCAAGAATACGAAAAAGATAAGCAATTGCTTGCGGTTCATGTTTATTTTCCATAGCCAAAACCAGGTCTAAATAAGTTTTGTAGTCCATTTCACCTTCATAAGTTAGACATTCTTGAAATACACGATCGAGACCCCATCAGAATTCC]

[+] EMBL BG931705             [GTCACCCTTACCACAATTGATAAGGTCATCTAAGGTGATGTAATGGGGATTCGCTGGTCGTACCATATCAAAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTGTCTTCTATTCCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCAACATCAAGAATACGAAAAAGATAAGCAATTGCTTGCGGTTCATGTTTATTTTCCATAGCCAAAACCAGGTCTAAATAAGTTTTGTAGTCCATTTCACCTTCATAAGTTAGACATTCTTGAAATACACGATCGAGACCCCATCAGAATTCC]




>consensus_8294#1
GTCACCCTTACCACAATTGATAAGGTCATCTAAGGTGATGTAATGGGGATTCGCTGGTCG
TACCATATCAAAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGC
ACGTAGTTTGTCTTCTATTCCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACC
TTGACCACCAACATCAAGAATACGAAAAAGATAAGCAATTGCTTGCGGTTCATGTTTATT
TTCCATAGCCAAAACCAGGTCTAAATAAGTTTTGTAGTCCATTTCACCTTCATAAGTTAG
ACATTCTTGAAATACACGATCGAGACCCCATCAGAATTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8294#0      ACTGNTTTTTTTAACTTTTTTTTTACTTCGCAAAAGTCCTGTATATTTTTAAGTAAAGAC 60
consensus_8294#1      ------------------------------------------------------------
                                                                                  

consensus_8294#0      ACATTACGAGAGTTTAGAAGTGTTCAATCGTCCAATAAGTATATAAGTTCATTTATGTTT 120
consensus_8294#1      ------------------------------------------------------------
                                                                                  

consensus_8294#0      TTTTCAGTAACAATGCATTGAGCAAATTAACACTGATCGCAATGTTGGATATCAGTGAAT 180
consensus_8294#1      ------------------------------------------------------------
                                                                                  

consensus_8294#0      AATCAAAATCCGATTTATAATTCGGCTTCATCTGGTATTTCGGAAGTAAAAGCTTCACGA 240
consensus_8294#1      ------------------------------------------------------------
                                                                                  

consensus_8294#0      TTCTCATGGGCCCAAAAACCTTGGAGATCGATTAATATGTTTATTACCGTGTCACCCTTA 300
consensus_8294#1      --------------------------------------------------GTCACCCTTA 10
                                                                        **********

consensus_8294#0      CCACAATTGATAAGGTCATCTAAGGTGATGTAATGGGGATTCGCTGGTCGTACCATATCA 360
consensus_8294#1      CCACAATTGATAAGGTCATCTAAGGTGATGTAATGGGGATTCGCTGGTCGTACCATATCA 70
                      ************************************************************

consensus_8294#0      AAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTG 420
consensus_8294#1      AAGATTTCATTTAATACATTGTCAAAACTTGGTGTATCATTATCTGAAGCACGTAGTTTG 130
                      ************************************************************

consensus_8294#0      TCTTCTATTCCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCA 480
consensus_8294#1      TCTTCTATTCCGTCGTAGAAATACCGCAATGTTAGTGAAGTCAGTTTACCTTGACCACCA 190
                      ************************************************************

consensus_8294#0      ACATCAAGAATACGGAAAAGATAAGCAATTGCTTGCGGCTCATGTTTATTTTCCATAGCC 540
consensus_8294#1      ACATCAAGAATACGAAAAAGATAAGCAATTGCTTGCGGTTCATGTTTATTTTCCATAGCC 250
                      ************** *********************** *********************

consensus_8294#0      CCACCCAGGTCTAAATAAGTTTTGTAGTCCATTTCACCTTCATAAGTTAGGCATTCTTGA 600
consensus_8294#1      AAAACCAGGTCTAAATAAGTTTTGTAGTCCATTTCACCTTCATAAGTTAGACATTCTTGA 310
                        * ********************************************** *********

consensus_8294#0      AATACACGATCGAGAAATACGTCGGT----- 626
consensus_8294#1      AATACACGATCGAGACCC-CATCAGAATTCC 340
                      ***************    * ** *