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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1136 fasta sequence
[CTGGTCCACACAGAAGTCCGAAGTCTCAGATGAAAATGTTTCATATGTTGGTTGTGCTGGATACATCCCATCCCTTTGTGACCCACTTTTGGATGCATTGAACAAATTATCAATAAGCCCAGAGTCTCCAGATCGTCTCTCTGGTATCGGATATCATACTGGAGATAACATTACTCCTGTTGTTCGTAATCCAGATTCTCATACTAGATACCCCAAGGAAAGTAAATCAACACATCTCGATTTTGATGCTGTTAGATTAAATCCCTTTGGTGTTTCACCAAACTACATGGAGACTTTTGAGAACTTATGTGGATGTGGACACAATACTCAATCTGAAATCCGGTTACCGAGATCAGATAATATTTTCAGTCATAGTCCTGTCACCTGCGGTGATGTCAATAAGGCGCAATTCACCAATCAAACCAACCAGTTGGTTTCGATCAGAAAAAATAATTGCCCCCTTCCCTGTGACGAGTATCCCGCANATATAGTTATCGATGGAGGTGCCTGGAATGGCTTGCCACTGCGTGATGCCATTGNGGCCGCTCTTGTTATACTTACTAGTAAATCCAAAGCATCTGGATGCCGTCGAATGATATCCCGTTCTTCCCATAGAAATAAGAAGTGGGATCGTGAGACGTTAAAACTCCACTCTTGGTAAGTATGTTATTTACCGAAGCTTCATTCTCTACAGGTTCAACTCTTTTTGCCTGTTGGAAATGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAAAAAGTTGGAGGAAGATTATGTTCTATGTGCATTTTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGG-GTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTATGTTTATTATGTCCTCATAAACTGAGTTATATCCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD079123 [CTGGTCCACACAGAAGTCCGAAGTCTCAGATGAAAATGTTTCATATGTTGGTTGTGCTGGATACATCCCATCCCTTTGTGACCCACTTTTGGATGCATTGAACAAATTATCAATAAGCCCAGAGTCTCCAGATCGTCTCTCTGGTATCGGATATCATACTGGAGATAACATTACTCCTGTTGTTCGTAATCCAGATTCTCATACTAGATACCCCAAGGAAAGTAAATCAACACATCTCGATTTTGATGCTGTTAGATTAAATCCCTTTGGTGTTTCACCAAACTACATGGAGACTTTTGAGAACTTATGTGGATGTGGACACAATACTCAATCTGAAATCCGGTTACCGAGATCAGATAATATTTTCAGTCATAGTCCTGTCACCTGCGGTGATGTCAATAAGGCGCAATTCACCAATCAAACCAACCAGTTGGTTTCGATCAGAAAAAATAATTGCCCCCTTCCCTGTGACGAGTATCCCGCANATATAGTTATCGATGGAGGTGCCTGGAATGGCTTGCCACTGCGTGATGCCATTGNGGCCGCTCTTGTTATACTTACTAGTAAATCCAAAGCATCTGGATGCCGTCGAATGATAT ]
[+] EMBL CD158869 [ ACCAAACTACATGGAGACTTTTGAGAACTTATGTGGATGTGGACACAATACTCAATCTGAAATCCGGTTACCGAGATCAGATAATATTTTCAGTCAT ]
[+] EMBL CD149779 [ ATGGCTTGCCACTGCGTGATGCCATTGGGGCCGCTCTTGTTATACTTACTAGTAAATCCAAAGCATCTGGATGCCGTCGAATGATATCCCGTTCTTCCCATAGAAATAAGAAGTGGGATCGTGAGACGTTAAAACTCCACTCTTGGTAAGTATGTTATTTACCGAAGCTTCATTCTCTACAGGTTCAACTCTTTTTGCCTGTTGGAAATGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAAAAAGTTGGAGGAAGATTATGTTCTATGTGCATTTTGC ]
[-] EMBL AI395810 [ CCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAGAAAGTTGGAGGAAGATTATGTTCTATGTGCATTTTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGG GTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTATGTTTATTATGTCCTCATAAACTGAGTTATATCCAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI394939 [ AAGTTGGAGGAAGATTATGTTATATGTGCATTTTACCGGAACACTGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGGTGTGACATGTCCGGTTTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATAAGGATTTATGTTTATTATGTCCTCATAAACTGAGTTATATCCAAAAAAAAAAAAAAAA ]
consensusID : consensus_8297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[TGAGATCGTGAGACGTTAAAACACCACTCTTGGTTCAACTCTTTTTGCCTGTTGGAAATGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAGAAAGTTGGAGGAAGATTATGTTCTATGTGCATTGTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGGGTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTATGTCTAGTATGTCCTCATAAACTGAGTTATANCCAAAAAAACCTAAAAA]
[-] EMBL AI394835 [TGAGATCGTGAGACGTTAAAACACCACTCTTGGTTCAACTCTTTTTGCCTGTTGGAAATGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAGAAAGTTGGAGGAAGATTATGTTCTATGTGCATTGTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGGGTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTATGTCTAGTATGTCCTCATAAACTGAGTTATANCCAAAAAAACCTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8297#0 CTGGTCCACACAGAAGTCCGAAGTCTCAGATGAAAATGTTTCATATGTTGGTTGTGCTGG 60
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 ATACATCCCATCCCTTTGTGACCCACTTTTGGATGCATTGAACAAATTATCAATAAGCCC 120
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 AGAGTCTCCAGATCGTCTCTCTGGTATCGGATATCATACTGGAGATAACATTACTCCTGT 180
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 TGTTCGTAATCCAGATTCTCATACTAGATACCCCAAGGAAAGTAAATCAACACATCTCGA 240
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 TTTTGATGCTGTTAGATTAAATCCCTTTGGTGTTTCACCAAACTACATGGAGACTTTTGA 300
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 GAACTTATGTGGATGTGGACACAATACTCAATCTGAAATCCGGTTACCGAGATCAGATAA 360
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 TATTTTCAGTCATAGTCCTGTCACCTGCGGTGATGTCAATAAGGCGCAATTCACCAATCA 420
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 AACCAACCAGTTGGTTTCGATCAGAAAAAATAATTGCCCCCTTCCCTGTGACGAGTATCC 480
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 CGCANATATAGTTATCGATGGAGGTGCCTGGAATGGCTTGCCACTGCGTGATGCCATTGN 540
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 GGCCGCTCTTGTTATACTTACTAGTAAATCCAAAGCATCTGGATGCCGTCGAATGATATC 600
consensus_8297#1 ------------------------------------------------------------
consensus_8297#0 CCGTTCTTCCCATAGAAATAAGAAGTGGGATCGTGAGACGTTAAAACTCCACTCTTGGTA 660
consensus_8297#1 ----------------------------------------------------------TG 2
*
consensus_8297#0 AGTATGTTATTTACCGAAGCTTCATTCTCTACAGGTTCAACTCTTTTTGCCTGTTGGAAA 720
consensus_8297#1 AGATCGTGAGACGTTAAAACACCACTCTT----GGTTCAACTCTTTTTGCCTGTTGGAAA 58
** ** * ** * ** *** ***************************
consensus_8297#0 TGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAAAAAGTTGGAGGAAGATTATG 780
consensus_8297#1 TGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAGAAAGTTGGAGGAAGATTATG 118
*************************************** ********************
consensus_8297#0 TTCTATGTGCATTTTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAG 840
consensus_8297#1 TTCTATGTGCATTGTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAG 178
************* **********************************************
consensus_8297#0 TTAGAGATCAAGATGGGCGGGTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATT 900
consensus_8297#1 TTAGAGATCAAGATGGGCGGGTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATT 238
************************************************************
consensus_8297#0 GCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTT 960
consensus_8297#1 GCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTT 298
************************************************************
consensus_8297#0 AGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCA 1020
consensus_8297#1 AGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCA 358
************************************************************
consensus_8297#0 TTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTA 1080
consensus_8297#1 TTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTA 418
************************************************************
consensus_8297#0 TGTTTATTATGTCCTCATAAACTGAGTTATATCCAAAAAAAAAAAAAAAAAAAAAA 1136
consensus_8297#1 TGTCTAGTATGTCCTCATAAACTGAGTTATANCCAAAAAAACCTAAAAA------- 467
*** ** ************************ ********* *****
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||