These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1339 fasta sequence [CTGTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGGACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTGATAGCTTTTAAAATTCTATAATCGAATATAGGATCTGGAACAATTATGCTTTCTAAATCTCTTGAATTATCTGTATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTACTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATTGATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTAGATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTAGGAAAAATGATAAGTGAGATACGAATGGTTGAAT-AAAATATTTCGCTTAACTTTCTAAGAAGACAAGAATACACTATTGGTTGAAAACGCGGCTTAATTATTCGAACGATATAGATATTTACGAATTGATCGTGCATGTATTTTCGACTCGGTTAGTCAATAATAAAGTTTCCTGCTCACTTTTAGTTTTCTCGTCCATGTGTCTAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCAAATGTCATCATTGAATTGAACATAAGACTACGAAGTAATTCTGGTTTATCTTCTCGGACTAGTTCAACGCATAGAGAAATGTAGTTCTCCATAAAATCTTTAACATACTCCGGTCCTAAGAGTATCGCACTTAGTTCCTCATTTACATTTGATGATCTACACTTGTGAACGCCACTCAGTAAACAATCTAATGTTTGAATAGCGTTGGCAACTCGGATGCGATGTCCATCATACTGAGCTGTTTGAAGGCATTGTATAAACAATCTGTTGAGCTGAGGCTTGAGTGATATCTTGTCCTTGAAACAGCTTATCATATACTTGAAGCACTTTCTCTTTAAGTGAAC] [+] EMBL CD194767 [CTGTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGGACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTGATAGCTTTTAAAATTCTATAATCGAATATAGGATCTGGAACAATTATGCTTTCTAAATCTCTTGAATTATCTGTATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTACTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATTGATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTAGATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTANGAAAAATGATAAGTGAGATACGAATGGTTGAATAAAAATATTcg ] [+] EMBL CD169190 [ AATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTAGATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTAGGAAAAATGATAAGTGAGATACGAATGGTTGAAT AAAATATTTCGCTTAACTTTCTAAGAAGACAAGAATACACTATTGGTTGAAAACGCGGCTTAATTATTCGAACGATATAGATATTTACGAATTGATCGTGCATGTATTTTCGACTCGGTTAGTCAATAATAAAGTTTCCTGCTCACTTTTAGTTTTCTCGTCCATGTGTCTAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGGTCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTG ] [+] EMBL CD169032 [ ACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTAGATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTAGGAAAAATGATAAGTGAGATACGAATGGTTGAAT AAAATATTTCGCTTAACTTTCTAAGAAGACAAGAATACACTATTGGTTGAAAACGCGGCTTAATTATTCGAACGATATAGATATTTACGAATTGATCGTGCATGTATTTTCGACTCGGTTAGTCAATAATAAAGTTTCCTGCTCACTTTTAGTTTTCTCGTCCATGTGTCTAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCANATGTCATCATTGAA ] [-] EMBL CD169101 [ TAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCAAATGTCATCATTGAATTGAACATAAGACTACGAAGTAATTCTGGTTTATCTTCTCGGACTAGTTCAACGCATAGAGAAATGTAGTTCTCCATAAAATCTTTAACATACTCCGGTCCTAAGAGTATCGCACTTAGTTCCTCATTTACATTTGATGATCTACACTTGTGAACGCCACTCAGTAAACAATCTAATGTTTGAATAGCGTTGGCAACTCGGATGCGATGTCCATCATACTGAGCTGTTTGAAGGCATTGTATAAACAATCTGTTGAGCTGAGGCTTGAGTGATATCTTGTCCTTGAAACAGCTTATCATATACTTGAAGCACTTTCTCTTTAAGTGAAC] [-] EMBL CD168987 [ ATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCAAATGTCATCATTGAATTGAACATAAGACTACGAAGTAATTCTGGTTTATCTTCTCGGACTAGTTCAACGCATAGAGAAATGTAGTTCTCCATAAAATCTTTAACATACTCCGGTCCTAAAAGTATCGCACTTAGTTCCTCATTTACATTTGATGATCTACACTTGTGAACGCCACTCAGTAAACAATCTAATGTTTGAATAGCGTTGGCAACTCGGATGCGATGTCCATCATACTGAGCCGTTTGAAGGCATTGTATAAACAATCTGTTGAGCTGAGGCTTGAGTGATATCTTGTCCTTGAAACAGCTTATCATATACTTGAAGCACTTTCTCTTTAAGTGAAC] consensusID : consensus_8298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [GTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGGACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTGATAGCTTTTAAAATTCTATAATCGGATATAGGATCTGGAACAATTATGCTTTCTAAATCTCTTGAATTATTTATATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTACTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATTGATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTATTTAACAACAGTTCATCTTCTGTCCCAGCCCCG] [+] EMBL CD200566 [GTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGGACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTGATAGCTTTTAAAATTCTATAATCGGATATAGGATCTGGAACAATTATGCTTTCTAAATCTCTTGAATTATTTATATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTACTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATTGATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTATTTAACAACAGTTCATCTTCTGTCCCAGCCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8298#0 CTGTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGG 60 consensus_8298#1 --GTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGG 58 ********************************************************** consensus_8298#0 ACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTG 120 consensus_8298#1 ACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTG 118 ************************************************************ consensus_8298#0 ATAGCTTTTAAAATTCTATAATCGAATATAGGATCTGGAACAATTATGCTTTCTAAATCT 180 consensus_8298#1 ATAGCTTTTAAAATTCTATAATCGGATATAGGATCTGGAACAATTATGCTTTCTAAATCT 178 ************************ *********************************** consensus_8298#0 CTTGAATTATCTGTATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTA 240 consensus_8298#1 CTTGAATTATTTATATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTA 238 ********** * *********************************************** consensus_8298#0 CTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATT 300 consensus_8298#1 CTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATT 298 ************************************************************ consensus_8298#0 GATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCA 360 consensus_8298#1 GATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCA 358 ************************************************************ consensus_8298#0 CCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACA 420 consensus_8298#1 CCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACA 418 ************************************************************ consensus_8298#0 GTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTA 480 consensus_8298#1 GTAGACAGTATACTATTTA---ACAACAGTTCA-----TCTTCTGTCCCAGCCCCG---- 466 ************** * * * * *** * * * * * * * consensus_8298#0 GATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTAGGAAAAATGATAAGTGAGATACG 540 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 AATGGTTGAATAAAATATTTCGCTTAACTTTCTAAGAAGACAAGAATACACTATTGGTTG 600 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 AAAACGCGGCTTAATTATTCGAACGATATAGATATTTACGAATTGATCGTGCATGTATTT 660 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 TCGACTCGGTTAGTCAATAATAAAGTTTCCTGCTCACTTTTAGTTTTCTCGTCCATGTGT 720 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 CTAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACA 780 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 GTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTAT 840 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 ATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAG 900 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 GATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAA 960 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 ATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCAAATGTCATCATTGAATTGAACATAA 1020 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 GACTACGAAGTAATTCTGGTTTATCTTCTCGGACTAGTTCAACGCATAGAGAAATGTAGT 1080 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 TCTCCATAAAATCTTTAACATACTCCGGTCCTAAGAGTATCGCACTTAGTTCCTCATTTA 1140 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 CATTTGATGATCTACACTTGTGAACGCCACTCAGTAAACAATCTAATGTTTGAATAGCGT 1200 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 TGGCAACTCGGATGCGATGTCCATCATACTGAGCTGTTTGAAGGCATTGTATAAACAATC 1260 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 TGTTGAGCTGAGGCTTGAGTGATATCTTGTCCTTGAAACAGCTTATCATATACTTGAAGC 1320 consensus_8298#1 ------------------------------------------------------------ consensus_8298#0 ACTTTCTCTTTAAGTGAAC 1339 consensus_8298#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||