These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 337 fasta sequence [AGAATAACTGTTCATTATGAAGCTCTACTTCATTTTCTTTCTGTTGGTGATATACTGTGGATTTTACAGC-GAAA-CCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGAATGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGG-ATACCTATGATGAACATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGATAAAACAAG-TAGTTCATGTATAANACGCAGTTGTGTTATCTCAATAACATACATACAAT] [-] EMBL CD179250 [AGAATAACTGTTCATTATGAAGCTCTACTTCATTTTCTTTCTGTTGGTGATATACTGTGGATTTTACAGC GAAG CCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGAATGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGG ATACCTATGATGAACATAAATTGCATGACTAAA ] [+] EMBL AA559525 [ CTGTCCATTATGAAGCTCTACTTCATTTCCTTTCTGTTGGTGATATACTGTGGATTTTACAGC GAAN CCAAACCTGGCCGANTCAANTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGAATGACTGTAAAAACAATGCGTGTAAAANAAATTGCCAANATGGAGTTAGAGATTGTATACNTGAAGTATGCAAAGTAAGCGANCACGTGG ATNCCTATGATGAACATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGATAAAACAAGTTAGTTCATG ] [+] EMBL AA559581 [ ATGAAGCTCTACTTCATTTTCTTTCTGTTGGTGATATACTGTGGATTTTANTGCTCAAC CCNAACCTGGCCGAGTCAAGTGCAACGCACAATGTTGGGAAACAGGAATta ] [+] EMBL AA559409 [ ATTTTCTTTCTGTTGGTGATATACTGTGGATTTTACAGC GAAAGCCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGAATGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGGAATACCTATGATGAACATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGATAAAACAAG TAGTTCATGTATAANACGCAGTTGTGTTATCTCA ] [+] EMBL AA999484 [ TCTTTCTGTTGGTGATATACTGTGGATTTTACAGC G AA CCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGACTGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGG ATACCTATGATGAACATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGAT AAACAAG TAGTTCATGTATAAGACGCAGTTGTGTTATCTCAATAACATACATACAAT] consensusID : consensus_8302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [CTGCGACTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAA] [+] EMBL CD090713 [CTGCGACTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8302#0 AGAATAACTGTTCATTATGAAGCTCTACTTCATTTTCTTTCTGTTGGTGATATACTGTGG 60 consensus_8302#1 ------------------------------------------------------------ consensus_8302#0 ATTTTACAGCGAAACCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGG 120 consensus_8302#1 ------CTGCGACTTAGAGATTGTATACGTGAAGTATGCAAAGTAAG--CGAGCTGCCAA 52 * **** * ** ** **** ** * * * consensus_8302#0 AATAAAGTGTAAGAATGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGT 180 consensus_8302#1 GATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGT 112 ** *** *** ** * ** **** ** * ************** consensus_8302#0 TAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGGATACCTATGATGAA-- 238 consensus_8302#1 TAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGC-------TGCCAA-GATGGAGT 164 ************************************** * ** * **** * consensus_8302#0 CATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGATAAAACAAGTAGTTCATGTA 298 consensus_8302#1 TAGAGATTGTATACGTGAA----------------------------------------- 183 * * **** ** * ** consensus_8302#0 TAANACGCAGTTGTGTTATCTCAATAACATACATACAAT 337 consensus_8302#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||