cluster # 8303

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Schistosoma mansoni
cluster # 8303 cluster # 8303 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8303#0 length = 1307 sequences # 5

consensus_8303#1 length = 341 sequences # 1

consensusID : consensus_8303#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1307
fasta sequence

                              [ACGACATCATAGTTGGAGCGACTAATCTTATAAACCTGATATAATATTAAATTGCTATATTGTCTCTCAGTCAGGATCCTCAAAATTGTTTGATTCGTATCCTTTATAATATAGCCAATGAAACTAAACGTTTTTTATCGCTTAACATCACATTCCTTTACAATTATTCAATTAAACGCTGTGTGTTTAATAAACCCCTTAGACGTATTAACAGTTAATAACCCGGCAATAGCAATTCATATTTTTCAAAAAAATAGTGCTTGGTAATACTTGTTAGGTACAATATATTGAGACCTTTTCAAAACATTTCTTTTGAATTGGCACCAGTCTAAATTATTTATAATCAATACAGGTTTAATTTTATTTTTCTTATCGATTATTGCTGGGATTATGAAGCTTGTTTTTAAAAAAAAACAAAATAGGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACACAATTAGCTCAACGGCTGAGTATGGTTTTCGCATTGAAGCAATCAAGACTTCTGGTGAATCCACTCGAAAAGATTTTCAAAACACTCATACATGGAATGAAATAATAAATCACTTTAAATTATTCGTAAAACACCGTAAAATAATTGCTCAAAACTATTTAATCCGATTATTAAAGTTGAGAACTATACTGGAAGTTTCTGATTTCTTTGCTAAACATGAGTTTATCGGCTCTTCATTATTATTTGTTCATGATGAATCAGGCTATGCTAATATCTGGTTAATTGATTTCGCTAAAATAGGCACTCCATCGAACAATCAAATTCGTGTAAATCATCGTTCTGTATGGAAAATTGGCAATTATGAAGATGGTTATTTAATTGGAATTGATAATTTAGTGAAATTATTCGAGCAAA-TATTCATGAATGCCAGTAGTTGAAGATTTCATAGATTATTCCCTTTTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTATATATATTATATATTCAGAAGAACACTACGATCTATATCCGGTTTACTATACAATATCCATATTTTCCATTTTTTACGTCGATTGCGTAGAACTAAATGATCTTTCCATAGAACAACTGACGTGTTGTGCATTGACTCAATAATAGTTAGCTTTCCCACTTTGTGTTCGTTTATTACTGCCTGATCTTATCCACTCCTCCCCCCACCTTTTGATCGCAACAGTACATTACNNAAATAACTANAATAATAGATCACTTGAAAAAACATATTTGTTTTTTTTTACGTTTT]

[+] EMBL AI977593             [ACGACATCATAGTTGGAGCGACTAATCTTATAAACCTGATATAATATTAAATTGCTATATTGTCTCTCAGTCAGGATCCTCAAAATTGTTTGATTCGTATCCTTTATAATATAGCCAATGAAACTAAACGTTTTTTATCGCTTAACATCACATTCCTTTACAATTATTCAATTAAACGCTGTGTGTTTAATAAACCCCTTAGACGTATTAACAGTTAATAACCCGGCAATAGCAATTCATATTTTTCAAAAAAATAGTGCTTGGTAATACTTGTTAGGTACAATATATTGAGACCTTTTCAAAACATTTCTTTTGAATTGGCACCAGTCTAAATTATTTATAATCAATACAGGTTTAATTTTATTTTTCTTATCGATTATTGCTGGGATTATGAAGCTTGTTTTTAAAAAAAAACAAAATAGGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACACAATTAGCTCAACGGCTGAGTATGGTTTTCGCATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD118771             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACACAATTAGCTCAACGGCTGAGTATGGTTTTCGCATTGAAGCAATCAAGACTTCTGGTGAATCCACTCGAAAAGATTTTCAAAACACTCATACATGGAATGAAATAATAAATCACTTTAAATTATTCGTAAAACACCGTAAAATAATTGCTCAAAACTATTTAATCCGATTATTAAAGTTGAGAACTATACTGGAAGTTTCTGATTTCTTTGCTAAACATGAGTTTATCGGCTCTTCATTATTATTTGTTCATGATGAATCAGGCTATGCTAATATCTGGTTAATTGATTTCGCTAAAATAGGCACTCCATCGAACAATCAAATTCGTGTAAATCATCGTTCTGTATGGAAAATTGGCAATTATGAAGATGGTTATTTAATTGGAATTGATAATTTAGTGAAATTATTCGAGCAAA TATTCATGAATGCCAG                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD088536             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGCATTGAAGCAATCAAGACTTCTGGTGAATCCACTCGAAAAGATTTTCAAAACACTCATACATGGAATGAAATAATAAATCACTTTAAATTATTCGTAAAACACCGTAAAATAATTGCTCAAAACTATTTAATCCGATTATTAAAGTTGAGAACTATACTGGAAGTTTCTGATTTCTTTGCTAAACATGAGTTTATCGGCTCTTCATTATTATTTGTTCATGATGAATCAGGCTATGCTAATACCTGGTTAATTGATTTCGCTAAAATAGGCACTCCATCGAACAATCAAATTCGTGTAAATCATCGTTCTGTATGGAAAATTGGCAATTATGAAGATGGTTATTTAATTGGAATTGATAATTTAGTGAAATTATTCGAGCAAATTATTCATGAATGCCAGTAGTTGAAGATTTCATAGATTATTCCCTTTTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTATATAT                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD119552             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GATAATTTAGTGAAATTATTCGAGCAAATTATTCATGAATGCCAGTAGTTGAAGATTTCATAGATTATTCCCTTTTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTATATATATTATATATTCAGAAGAACACTACGATCTATATCCGGTTTACTATACAATATCCATATTTTCCATTTTTTACGTCGATTGCGTAGAACTAAATGATCTTTCCATAGAACAACTGACGTGTTGTGCATTGACTCAATAATAGTTAGCTTTCCCACTTTGTGTTCGTTTATTACTGCCTGATCTTATCCACTCCTCCCCCCACCTTTTGATCGCAACAGTACATTACNNAAATAACTANAATAATAGATCACTTGAAAAAACATATTTGTTTTTTTTTACGTTTT]
[-] EMBL BG932285             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGTTGAAGATTTCATAGATTATTCCCTTGTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTATATATATTATATATTCAGAAGAACACTACGATCTATATCCGGTTTACTATACAATATCCATATTTTCCATTTTTTACGTCGATTGCGTAGAACTAAATGATCTTTCCATAGAACAACTGACGTGTTGTGCATTGACTCAATAATAGTTAGCTTTCCCACTTTGTGTTCGTTTATTACTGCCTGATGTTATCCACTCCTCCCCCCACCTTTTGATCGC                                                                       ]




>consensus_8303#0
ACGACATCATAGTTGGAGCGACTAATCTTATAAACCTGATATAATATTAAATTGCTATAT
TGTCTCTCAGTCAGGATCCTCAAAATTGTTTGATTCGTATCCTTTATAATATAGCCAATG
AAACTAAACGTTTTTTATCGCTTAACATCACATTCCTTTACAATTATTCAATTAAACGCT
GTGTGTTTAATAAACCCCTTAGACGTATTAACAGTTAATAACCCGGCAATAGCAATTCAT
ATTTTTCAAAAAAATAGTGCTTGGTAATACTTGTTAGGTACAATATATTGAGACCTTTTC
AAAACATTTCTTTTGAATTGGCACCAGTCTAAATTATTTATAATCAATACAGGTTTAATT
TTATTTTTCTTATCGATTATTGCTGGGATTATGAAGCTTGTTTTTAAAAAAAAACAAAAT
AGGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATC
ATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACACAATTAGCTCAACGG
CTGAGTATGGTTTTCGCATTGAAGCAATCAAGACTTCTGGTGAATCCACTCGAAAAGATT
TTCAAAACACTCATACATGGAATGAAATAATAAATCACTTTAAATTATTCGTAAAACACC
GTAAAATAATTGCTCAAAACTATTTAATCCGATTATTAAAGTTGAGAACTATACTGGAAG
TTTCTGATTTCTTTGCTAAACATGAGTTTATCGGCTCTTCATTATTATTTGTTCATGATG
AATCAGGCTATGCTAATATCTGGTTAATTGATTTCGCTAAAATAGGCACTCCATCGAACA
ATCAAATTCGTGTAAATCATCGTTCTGTATGGAAAATTGGCAATTATGAAGATGGTTATT
TAATTGGAATTGATAATTTAGTGAAATTATTCGAGCAAATATTCATGAATGCCAGTAGTT
GAAGATTTCATAGATTATTCCCTTTTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTAT
ATATATTATATATTCAGAAGAACACTACGATCTATATCCGGTTTACTATACAATATCCAT
ATTTTCCATTTTTTACGTCGATTGCGTAGAACTAAATGATCTTTCCATAGAACAACTGAC
GTGTTGTGCATTGACTCAATAATAGTTAGCTTTCCCACTTTGTGTTCGTTTATTACTGCC
TGATCTTATCCACTCCTCCCCCCACCTTTTGATCGCAACAGTACATTACNNAAATAACTA
NAATAATAGATCACTTGAAAAAACATATTTGTTTTTTTTTACGTTTT

consensusID : consensus_8303#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [CGTTTTAAAACGTTACTGCCAAAGTGAAGCCCAATGTTTACTACAACTCCAGCTAGATATACTGAGATCATTTGTCCCCAAGTATCAAGGCGAGAAGCTGCTCGATGGTGAACGTTACGTAAAAATGCAAGATTTGCTATACAATTTTAAATCACCATCAATAATGGACTGCAAGATTGGACAGCGTACTTTTTCAGAAAGTGAAGTCATTGGAGACTCTTCAGAAAATATTCGGAAAGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACA]

[-] EMBL CD202549             [CGTTTTAAAACGTTACTGCCAAAGTGAAGCCCAATGTTTACTACAACTCCAGCTAGATATACTGAGATCATTTGTCCCCAAGTATCAAGGCGAGAAGCTGCTCGATGGTGAACGTTACGTAAAAATGCAAGATTTGCTATACAATTTTAAATCACCATCAATAATGGACTGCAAGATTGGACAGCGTACTTTTTCAGAAAGTGAAGTCATTGGAGACTCTTCAGAAAATATTCGGAAAGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACA]




>consensus_8303#1
CGTTTTAAAACGTTACTGCCAAAGTGAAGCCCAATGTTTACTACAACTCCAGCTAGATAT
ACTGAGATCATTTGTCCCCAAGTATCAAGGCGAGAAGCTGCTCGATGGTGAACGTTACGT
AAAAATGCAAGATTTGCTATACAATTTTAAATCACCATCAATAATGGACTGCAAGATTGG
ACAGCGTACTTTTTCAGAAAGTGAAGTCATTGGAGACTCTTCAGAAAATATTCGGAAAGA
TCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATCATGA
AAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8303#0      ACGACATCATAGTTGGAGCGACTAATCTTATAAACCTGATATAATATTAAATTGCTATAT 60
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      TGTCTCTCAGTCAGGATCCTCAAAATTGTTTGATTCGTATCCTTTATAATATAGCCAATG 120
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      AAACTAAACGTTTTTTATCGCTTAACATCACATTCCTTTACAATTATTCAATTAAACGCT 180
consensus_8303#1      -------------------------CGTTTTAAAACGTTACTGCCA--AAGTGAAGCCCA 33
                                               * *   *   * ****    *   * * ** * * 

consensus_8303#0      GTGTGTTTAATAAACCCC-TTAGACGTATTAACAGTTAATAACCCGGCAATAGCAATTCA 239
consensus_8303#1      ATGTTTACTACAACTCCAGCTAGATATACTGAGA-TCATTTGTCCCCAAGTATCAAGGCG 92
                       *** *   * **  **   ****  ** * * * * * *   **   * ** ***  * 

consensus_8303#0      TATTTTTCAAAAAAATAGTGCTTGGTAATACTTGTTAGGTACAATATATTGAGACCTTTT 299
consensus_8303#1      ------------AGAAGCTGCTCGATGGTGAACGTTACGTA----AAAATGCAAGATTTG 136
                                  * *   **** * *  *    **** ***    * * **  *  *** 

consensus_8303#0      CAAAACATTTCTTTTGAATTGGCACCAGTCTAAATTATTTATAATCAATACAGGTTTAAT 359
consensus_8303#1      CTATACAA---TTTTAAATCACCATCAAT---AATGGACTGCAA--------GATTGGAC 182
                      * * ***    **** ***   ** ** *   ***    *  **        * **  * 

consensus_8303#0      TTTATTTTTCTTATCGATTATTGCTGGGATTATGAAGCTTGTTTTTAAAAAAAAACAAAA 419
consensus_8303#1      AGCGTACTTTTT--CAGAAAGTGAAGTCATTGGAGA-----CTCTTCAGAAAATATTCGG 235
                          *  ** **  *    * **  *  ***    *      * ** * **** *     

consensus_8303#0      TAGGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACAT 479
consensus_8303#1      AAAGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACAT 295
                       * *********************************************************

consensus_8303#0      CATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACACAATTAGCTCAACG 539
consensus_8303#1      CATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACA-------------- 341
                      **********************************************              

consensus_8303#0      GCTGAGTATGGTTTTCGCATTGAAGCAATCAAGACTTCTGGTGAATCCACTCGAAAAGAT 599
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      TTTCAAAACACTCATACATGGAATGAAATAATAAATCACTTTAAATTATTCGTAAAACAC 659
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      CGTAAAATAATTGCTCAAAACTATTTAATCCGATTATTAAAGTTGAGAACTATACTGGAA 719
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      GTTTCTGATTTCTTTGCTAAACATGAGTTTATCGGCTCTTCATTATTATTTGTTCATGAT 779
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      GAATCAGGCTATGCTAATATCTGGTTAATTGATTTCGCTAAAATAGGCACTCCATCGAAC 839
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      AATCAAATTCGTGTAAATCATCGTTCTGTATGGAAAATTGGCAATTATGAAGATGGTTAT 899
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      TTAATTGGAATTGATAATTTAGTGAAATTATTCGAGCAAATATTCATGAATGCCAGTAGT 959
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      TGAAGATTTCATAGATTATTCCCTTTTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTA 1019
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      TATATATTATATATTCAGAAGAACACTACGATCTATATCCGGTTTACTATACAATATCCA 1079
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      TATTTTCCATTTTTTACGTCGATTGCGTAGAACTAAATGATCTTTCCATAGAACAACTGA 1139
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      CGTGTTGTGCATTGACTCAATAATAGTTAGCTTTCCCACTTTGTGTTCGTTTATTACTGC 1199
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      CTGATCTTATCCACTCCTCCCCCCACCTTTTGATCGCAACAGTACATTACNNAAATAACT 1259
consensus_8303#1      ------------------------------------------------------------
                                                                                  

consensus_8303#0      ANAATAATAGATCACTTGAAAAAACATATTTGTTTTTTTTTACGTTTT 1307
consensus_8303#1      ------------------------------------------------