These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1307 fasta sequence [ACGACATCATAGTTGGAGCGACTAATCTTATAAACCTGATATAATATTAAATTGCTATATTGTCTCTCAGTCAGGATCCTCAAAATTGTTTGATTCGTATCCTTTATAATATAGCCAATGAAACTAAACGTTTTTTATCGCTTAACATCACATTCCTTTACAATTATTCAATTAAACGCTGTGTGTTTAATAAACCCCTTAGACGTATTAACAGTTAATAACCCGGCAATAGCAATTCATATTTTTCAAAAAAATAGTGCTTGGTAATACTTGTTAGGTACAATATATTGAGACCTTTTCAAAACATTTCTTTTGAATTGGCACCAGTCTAAATTATTTATAATCAATACAGGTTTAATTTTATTTTTCTTATCGATTATTGCTGGGATTATGAAGCTTGTTTTTAAAAAAAAACAAAATAGGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACACAATTAGCTCAACGGCTGAGTATGGTTTTCGCATTGAAGCAATCAAGACTTCTGGTGAATCCACTCGAAAAGATTTTCAAAACACTCATACATGGAATGAAATAATAAATCACTTTAAATTATTCGTAAAACACCGTAAAATAATTGCTCAAAACTATTTAATCCGATTATTAAAGTTGAGAACTATACTGGAAGTTTCTGATTTCTTTGCTAAACATGAGTTTATCGGCTCTTCATTATTATTTGTTCATGATGAATCAGGCTATGCTAATATCTGGTTAATTGATTTCGCTAAAATAGGCACTCCATCGAACAATCAAATTCGTGTAAATCATCGTTCTGTATGGAAAATTGGCAATTATGAAGATGGTTATTTAATTGGAATTGATAATTTAGTGAAATTATTCGAGCAAA-TATTCATGAATGCCAGTAGTTGAAGATTTCATAGATTATTCCCTTTTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTATATATATTATATATTCAGAAGAACACTACGATCTATATCCGGTTTACTATACAATATCCATATTTTCCATTTTTTACGTCGATTGCGTAGAACTAAATGATCTTTCCATAGAACAACTGACGTGTTGTGCATTGACTCAATAATAGTTAGCTTTCCCACTTTGTGTTCGTTTATTACTGCCTGATCTTATCCACTCCTCCCCCCACCTTTTGATCGCAACAGTACATTACNNAAATAACTANAATAATAGATCACTTGAAAAAACATATTTGTTTTTTTTTACGTTTT] [+] EMBL AI977593 [ACGACATCATAGTTGGAGCGACTAATCTTATAAACCTGATATAATATTAAATTGCTATATTGTCTCTCAGTCAGGATCCTCAAAATTGTTTGATTCGTATCCTTTATAATATAGCCAATGAAACTAAACGTTTTTTATCGCTTAACATCACATTCCTTTACAATTATTCAATTAAACGCTGTGTGTTTAATAAACCCCTTAGACGTATTAACAGTTAATAACCCGGCAATAGCAATTCATATTTTTCAAAAAAATAGTGCTTGGTAATACTTGTTAGGTACAATATATTGAGACCTTTTCAAAACATTTCTTTTGAATTGGCACCAGTCTAAATTATTTATAATCAATACAGGTTTAATTTTATTTTTCTTATCGATTATTGCTGGGATTATGAAGCTTGTTTTTAAAAAAAAACAAAATAGGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACACAATTAGCTCAACGGCTGAGTATGGTTTTCGCATTG ] [+] EMBL CD118771 [ ACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACACAATTAGCTCAACGGCTGAGTATGGTTTTCGCATTGAAGCAATCAAGACTTCTGGTGAATCCACTCGAAAAGATTTTCAAAACACTCATACATGGAATGAAATAATAAATCACTTTAAATTATTCGTAAAACACCGTAAAATAATTGCTCAAAACTATTTAATCCGATTATTAAAGTTGAGAACTATACTGGAAGTTTCTGATTTCTTTGCTAAACATGAGTTTATCGGCTCTTCATTATTATTTGTTCATGATGAATCAGGCTATGCTAATATCTGGTTAATTGATTTCGCTAAAATAGGCACTCCATCGAACAATCAAATTCGTGTAAATCATCGTTCTGTATGGAAAATTGGCAATTATGAAGATGGTTATTTAATTGGAATTGATAATTTAGTGAAATTATTCGAGCAAA TATTCATGAATGCCAG ] [-] EMBL CD088536 [ CGCATTGAAGCAATCAAGACTTCTGGTGAATCCACTCGAAAAGATTTTCAAAACACTCATACATGGAATGAAATAATAAATCACTTTAAATTATTCGTAAAACACCGTAAAATAATTGCTCAAAACTATTTAATCCGATTATTAAAGTTGAGAACTATACTGGAAGTTTCTGATTTCTTTGCTAAACATGAGTTTATCGGCTCTTCATTATTATTTGTTCATGATGAATCAGGCTATGCTAATACCTGGTTAATTGATTTCGCTAAAATAGGCACTCCATCGAACAATCAAATTCGTGTAAATCATCGTTCTGTATGGAAAATTGGCAATTATGAAGATGGTTATTTAATTGGAATTGATAATTTAGTGAAATTATTCGAGCAAATTATTCATGAATGCCAGTAGTTGAAGATTTCATAGATTATTCCCTTTTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTATATAT ] [+] EMBL CD119552 [ GATAATTTAGTGAAATTATTCGAGCAAATTATTCATGAATGCCAGTAGTTGAAGATTTCATAGATTATTCCCTTTTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTATATATATTATATATTCAGAAGAACACTACGATCTATATCCGGTTTACTATACAATATCCATATTTTCCATTTTTTACGTCGATTGCGTAGAACTAAATGATCTTTCCATAGAACAACTGACGTGTTGTGCATTGACTCAATAATAGTTAGCTTTCCCACTTTGTGTTCGTTTATTACTGCCTGATCTTATCCACTCCTCCCCCCACCTTTTGATCGCAACAGTACATTACNNAAATAACTANAATAATAGATCACTTGAAAAAACATATTTGTTTTTTTTTACGTTTT] [-] EMBL BG932285 [ AGTTGAAGATTTCATAGATTATTCCCTTGTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTATATATATTATATATTCAGAAGAACACTACGATCTATATCCGGTTTACTATACAATATCCATATTTTCCATTTTTTACGTCGATTGCGTAGAACTAAATGATCTTTCCATAGAACAACTGACGTGTTGTGCATTGACTCAATAATAGTTAGCTTTCCCACTTTGTGTTCGTTTATTACTGCCTGATGTTATCCACTCCTCCCCCCACCTTTTGATCGC ] consensusID : consensus_8303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CGTTTTAAAACGTTACTGCCAAAGTGAAGCCCAATGTTTACTACAACTCCAGCTAGATATACTGAGATCATTTGTCCCCAAGTATCAAGGCGAGAAGCTGCTCGATGGTGAACGTTACGTAAAAATGCAAGATTTGCTATACAATTTTAAATCACCATCAATAATGGACTGCAAGATTGGACAGCGTACTTTTTCAGAAAGTGAAGTCATTGGAGACTCTTCAGAAAATATTCGGAAAGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACA] [-] EMBL CD202549 [CGTTTTAAAACGTTACTGCCAAAGTGAAGCCCAATGTTTACTACAACTCCAGCTAGATATACTGAGATCATTTGTCCCCAAGTATCAAGGCGAGAAGCTGCTCGATGGTGAACGTTACGTAAAAATGCAAGATTTGCTATACAATTTTAAATCACCATCAATAATGGACTGCAAGATTGGACAGCGTACTTTTTCAGAAAGTGAAGTCATTGGAGACTCTTCAGAAAATATTCGGAAAGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACATCATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8303#0 ACGACATCATAGTTGGAGCGACTAATCTTATAAACCTGATATAATATTAAATTGCTATAT 60 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TGTCTCTCAGTCAGGATCCTCAAAATTGTTTGATTCGTATCCTTTATAATATAGCCAATG 120 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 AAACTAAACGTTTTTTATCGCTTAACATCACATTCCTTTACAATTATTCAATTAAACGCT 180 consensus_8303#1 -------------------------CGTTTTAAAACGTTACTGCCA--AAGTGAAGCCCA 33 * * * * **** * * * ** * * consensus_8303#0 GTGTGTTTAATAAACCCC-TTAGACGTATTAACAGTTAATAACCCGGCAATAGCAATTCA 239 consensus_8303#1 ATGTTTACTACAACTCCAGCTAGATATACTGAGA-TCATTTGTCCCCAAGTATCAAGGCG 92 *** * * ** ** **** ** * * * * * * ** * ** *** * consensus_8303#0 TATTTTTCAAAAAAATAGTGCTTGGTAATACTTGTTAGGTACAATATATTGAGACCTTTT 299 consensus_8303#1 ------------AGAAGCTGCTCGATGGTGAACGTTACGTA----AAAATGCAAGATTTG 136 * * **** * * * **** *** * * ** * *** consensus_8303#0 CAAAACATTTCTTTTGAATTGGCACCAGTCTAAATTATTTATAATCAATACAGGTTTAAT 359 consensus_8303#1 CTATACAA---TTTTAAATCACCATCAAT---AATGGACTGCAA--------GATTGGAC 182 * * *** **** *** ** ** * *** * ** * ** * consensus_8303#0 TTTATTTTTCTTATCGATTATTGCTGGGATTATGAAGCTTGTTTTTAAAAAAAAACAAAA 419 consensus_8303#1 AGCGTACTTTTT--CAGAAAGTGAAGTCATTGGAGA-----CTCTTCAGAAAATATTCGG 235 * ** ** * * ** * *** * * ** * **** * consensus_8303#0 TAGGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACAT 479 consensus_8303#1 AAAGATCTCTACTTGAAAATGATGTCTACTTCACCTAACGCACCGACTGAAAGAGAACAT 295 * ********************************************************* consensus_8303#0 CATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACACAATTAGCTCAACG 539 consensus_8303#1 CATGAAAAAGGTGTTTCAAAACTACGCTATTTGCAGTGGCGTGACA-------------- 341 ********************************************** consensus_8303#0 GCTGAGTATGGTTTTCGCATTGAAGCAATCAAGACTTCTGGTGAATCCACTCGAAAAGAT 599 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TTTCAAAACACTCATACATGGAATGAAATAATAAATCACTTTAAATTATTCGTAAAACAC 659 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 CGTAAAATAATTGCTCAAAACTATTTAATCCGATTATTAAAGTTGAGAACTATACTGGAA 719 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GTTTCTGATTTCTTTGCTAAACATGAGTTTATCGGCTCTTCATTATTATTTGTTCATGAT 779 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 GAATCAGGCTATGCTAATATCTGGTTAATTGATTTCGCTAAAATAGGCACTCCATCGAAC 839 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 AATCAAATTCGTGTAAATCATCGTTCTGTATGGAAAATTGGCAATTATGAAGATGGTTAT 899 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TTAATTGGAATTGATAATTTAGTGAAATTATTCGAGCAAATATTCATGAATGCCAGTAGT 959 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TGAAGATTTCATAGATTATTCCCTTTTGCTTTTCCGTTTTCACGTCTTTGTGAGTGTTTA 1019 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TATATATTATATATTCAGAAGAACACTACGATCTATATCCGGTTTACTATACAATATCCA 1079 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 TATTTTCCATTTTTTACGTCGATTGCGTAGAACTAAATGATCTTTCCATAGAACAACTGA 1139 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 CGTGTTGTGCATTGACTCAATAATAGTTAGCTTTCCCACTTTGTGTTCGTTTATTACTGC 1199 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 CTGATCTTATCCACTCCTCCCCCCACCTTTTGATCGCAACAGTACATTACNNAAATAACT 1259 consensus_8303#1 ------------------------------------------------------------ consensus_8303#0 ANAATAATAGATCACTTGAAAAAACATATTTGTTTTTTTTTACGTTTT 1307 consensus_8303#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||