These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 800 fasta sequence [TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGACAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGATAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACGTCATATACTAT-GCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGGTAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCTAAATGCNAATGCAGACGTTN] [-] EMBL CD140303 [TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGACAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGATAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACGTCATATACTAT GCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGGTAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTC ] [+] EMBL CD082544 [ ggccagAATTTGGCACGAG GGTGAAGGTACGTCATATACTATNGCGAAAAACAAAGTAAATGCTTANAAGCTTTAGAACAACTTAAAAATGGTAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCTAAATGCNAATGCAGACGTTN] [-] EMBL CD146391 [ TTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTC ] consensusID : consensus_8305#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence [GCCAGAATTTGGCACGAGGTCGTTAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAACAAT] [+] EMBL CD081091 [GCCAGAATTTGGCACGAGGTCGTTAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTCTATATTGGCTTCTTTTATCTTTGCGTC AATGTTA TTTATACCTAA TTGTTACATCCG ATATATTCCCCCAc ] [-] EMBL CD074914 [ CATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTCCAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTTTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAACAAT] [-] EMBL CD076142 [ TAAAACACAATATGGATATCATA TATCATGG TGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8305#0 TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGA 60 consensus_8305#1 ------------------------------------------------------------ consensus_8305#0 CAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGA 120 consensus_8305#1 ------------------------------------------------------------ consensus_8305#0 TAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACG 180 consensus_8305#1 ------------------------------------------------------------ consensus_8305#0 TCATATACTATGCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGG 240 consensus_8305#1 ------------------------------------------------------------ consensus_8305#0 TAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGA 300 consensus_8305#1 --------------------------GCCAGAATTTGGCACGAGGTCGTT-AGGGGGTGA 33 * * * * ** ***** ********* consensus_8305#0 TCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTT 360 consensus_8305#1 TCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTT 93 ************************************************************ consensus_8305#0 GCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGG 420 consensus_8305#1 GCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGG 153 ************************************************************ consensus_8305#0 ATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATT 480 consensus_8305#1 ATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATT 213 ************************************************************ consensus_8305#0 TGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTA 540 consensus_8305#1 TGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTA 273 ************************************************************ consensus_8305#0 CTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACAT 600 consensus_8305#1 CTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACAT 333 ************************************************************ consensus_8305#0 AATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTC 660 consensus_8305#1 AATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTC 393 ************************************************************ consensus_8305#0 TATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATC 720 consensus_8305#1 TATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATC 453 ************************************************************ consensus_8305#0 ACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCT 780 consensus_8305#1 ACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCT 513 ************************************** ******************** consensus_8305#0 AAATGCNAATGCAGACGTTN---------------------------------------- 800 consensus_8305#1 AAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAG 573 ****** ************ consensus_8305#0 ------------------------------------------------------------ consensus_8305#1 ATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATT 633 consensus_8305#0 ------------------------------------------------------------ consensus_8305#1 GTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGT 693 consensus_8305#0 ---------------------------------------------- consensus_8305#1 TATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAACAAT 739 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||