cluster # 8310

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Schistosoma mansoni
cluster # 8310 cluster # 8310 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8310#0 length = 488 sequences # 5

consensus_8310#1 length = 359 sequences # 1

consensusID : consensus_8310#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 488
fasta sequence

                              [ATTTCGAAGTCCTGATAAGAAGGACTTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAGACATTGATGAAACTAAATGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGTCATATAGAACATGAAATCCTTGTTCCTGTTGAAT-GGATCAAAAGTGGCACGTTAGTGGATTTTGAAGCCGTCGGG-AATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGT-AATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCC-ATACAAACTGAAACAACTGTGAAGATGACTACCATATGGGTTACAGAAAAGACTT]

[+] EMBL CD152150             [ATTTCGAAGTCCTGATAAGAAGGACTTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAGACATTGATGAAACTAAATGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGTCATATAGAACATGAAATCCTTGTTCCTGTTGAAT GGATCAAAAGTGGCACGTTAGTGGATTTTGAAGCCGTCGGG AATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGTAAATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCC ATACAAACTGAAACAACTGTGAAGATGACTACCATATGGGTTACAGAAAAGACTT]
[+] EMBL CD152091             [                              CGCAATCAAGATGTCAATTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAGACATTGATGAAACTAAATGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGTCATATAGAACATGAAATCCTTGTTCCTGTTGAAT GGATCAAAAGTGGCACGTTAGTGGATTTTGAAGCCGTCGGG                                                                                                                                                                                                                   ]
[-] EMBL CD152078             [                                                                                                                                                                 atgGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGTCATATAGAACATGAAATCCTTGTTCCTGTNGAAT GGATCAAAAGTGGCACGTTAGTGGATTTTGAAGCCGTCGGG AATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGT AATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCC ATACAAACTGAAACA                                        ]
[-] EMBL CD152089             [                                                                                                                                                                         TCGAAAATTGCTGCTATATTCAAATGTGAAAAACGTCATATAGAACATGAAATCCTTG TCCTG TGAATGGGATCAAAAGTGGCACGTTAGTGGATTTTGAAG CGTCGGGNAATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGT AATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCC ATACAAACTGAAACAACTGTGAAGATGTCTA                        ]
[-] EMBL CD152146             [                                                                                                                                                                                                                                                                                           ATATTGGTCCAAAAAACGAAACGAAATATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGT AATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCCTATACTACGTGA                                            ]




>consensus_8310#0
ATTTCGAAGTCCTGATAAGAAGGACTTATTCGCAATCAAGATGTCTTTTAAGATAACAGT
TAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATC
ATTTTATTATGAGAACATTCCTACAGACATTGATGAAACTAAATGGAAATCGAAAATTGC
TGCTATATTTCAATGTGAAAAACGTCATATAGAACATGAAATCCTTGTTCCTGTTGAATG
GATCAAAAGTGGCACGTTAGTGGATTTTGAAGCCGTCGGGAATATTTGTCCAAAAAACGA
AACGAAAAATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAG
AATTAACATATGCATAGATAGTAATGATAAGGAAACTCATAACATGAAAGTAAATGATTG
CCGTATTCCGGCCATACAAACTGAAACAACTGTGAAGATGACTACCATATGGGTTACAGA
AAAGACTT

consensusID : consensus_8310#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence

                              [CATTTTCATATTCACTCTAATGGTTTAATAAGTGTATTCAAAGATCGGTACTTTGGATTGATTGCAAATTATTTATCAGACACTCCACCTTTTGTATTCGAAGTTTTGGATACGAAGGACTTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAAAATTTGACGAAACTAAATGGAGATCGAAAATGGCTGCTATATTTCAATGCGAAGAACGGAAGAGGGAACCTGAAGTTCTTGTTCCTGTTGAATGGATTAAAAGTAACACGTTAGTGGA]

[+] EMBL CD118777             [CATTTTCATATTCACTCTAATGGTTTAATAAGTGTATTCAAAGATCGGTACTTTGGATTGATTGCAAATTATTTATCAGACACTCCACCTTTTGTATTCGAAGTTTTGGATACGAAGGACTTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAAAATTTGACGAAACTAAATGGAGATCGAAAATGGCTGCTATATTTCAATGCGAAGAACGGAAGAGGGAACCTGAAGTTCTTGTTCCTGTTGAATGGATTAAAAGTAACACGTTAGTGGA]




>consensus_8310#1
CATTTTCATATTCACTCTAATGGTTTAATAAGTGTATTCAAAGATCGGTACTTTGGATTG
ATTGCAAATTATTTATCAGACACTCCACCTTTTGTATTCGAAGTTTTGGATACGAAGGAC
TTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAG
ACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACA
AAATTTGACGAAACTAAATGGAGATCGAAAATGGCTGCTATATTTCAATGCGAAGAACGG
AAGAGGGAACCTGAAGTTCTTGTTCCTGTTGAATGGATTAAAAGTAACACGTTAGTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8310#0      ------------------------------------------------------------
consensus_8310#1      CATTTTCATATTCACTCTAATGGTTTAATAAGTGTATTCAAAGATCGGTACTTTGGATTG 60
                                                                                  

consensus_8310#0      ----------------------------------ATTTCGAAGTCCTG-ATAAGAAGGAC 25
consensus_8310#1      ATTGCAAATTATTTATCAGACACTCCACCTTTTGTATTCGAAGTTTTGGATACGAAGGAC 120
                                                          ********  ** *** *******

consensus_8310#0      TTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAG 85
consensus_8310#1      TTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAG 180
                      ************************************************************

consensus_8310#0      ACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACA 145
consensus_8310#1      ACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACA 240
                      ************************************************************

consensus_8310#0      GACATTGATGAAACTAAATGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGT 205
consensus_8310#1      AAATTTGACGAAACTAAATGGAGATCGAAAATGGCTGCTATATTTCAATGCGAAGAACGG 300
                       *  **** ************* ********* ***************** *** **** 

consensus_8310#0      CATATAGAACATGAAATCCTTGTTCCTGTTGAATGGATCAAAAGTGGCACGTTAGTGGAT 265
consensus_8310#1      AAGAGGGAACCTGAAGTTCTTGTTCCTGTTGAATGGATTAAAAGTAACACGTTAGTGGA- 359
                       * *  **** **** * ******************** ******  ************ 

consensus_8310#0      TTTGAAGCCGTCGGGAATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCG 325
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      AAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGTAAT 385
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      GATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCCATACAAACTGAA 445
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#0      ACAACTGTGAAGATGACTACCATATGGGTTACAGAAAAGACTT 488
consensus_8310#1      -------------------------------------------