cluster # 8311

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Schistosoma mansoni
cluster # 8311 cluster # 8311 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8311#0 length = 730 sequences # 4

consensus_8311#1 length = 419 sequences # 2

consensusID : consensus_8311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 730
fasta sequence

                              [AGAAGTAATCGAATTGAGTAGTGGTTCTGATGATGATACGCAGCCACGTGATGCTGATGGTGAGGAGCATTACTCTTCTGGTGTGGACAATTACGGCAACGAGGAAACAAATGAACACACAGCACCTACAGATGTGGGAGTACCGGAAAATGTCGGTGATTGTTATGAAAGGGTGGGTGGAAATGATGGACAATTACACTATGAGACGAACAGTACGGAGAAAAGTGACTCCACTTCTCAGATTTCAGAAAAAGCACCGACTTCTCTCAATACGGAGATGGAACCTGTTTCTTCTAGCAAGAGTTTATTAGGTGAATCATCTATTCCTAGTCTTTTCAGCAGCTCTGGTCTACCCAAAACTTCCGGCTCACTATTGGGTTCATCTGGTCTTTTCTCCGGTTTTAAGCCTTCTTCGCTAACTGTTCCATATTCAGTTGCTACTACTGAGTCTGGACTTCCGTCTAGTAGTTGCACGGGACTTTTCAAATCATTTTTGCCAGTGAATACAGTTCCAAGTTCAACCACCACTCCATTACTTTTTAAACCTTCTACATTCTCTGCTTCAATTGCAGCTTCCAAAGAA-TCTCAGAG-CTCTGGTGATTCTAGCACATCTCGGCCAAAGATTCAACCCATTGTCTGGGATTCCTTTGACCCTTCTACTGCTCAGTCAAGTATATCAGATAGTGCATGTACTTGTGGCCCGGTTCGAAGAAAAAAATGGTGTCCTGTT]

[+] EMBL CD178509             [AGAAGTAATCGAATTGAGTAGTGGTTCTGATGATGATACGCAGCCACGTGATGCTGATGGTGAGGAGCATTACTCTTCTGGTGTGGACAATTACGGCAACGAGGAAACAAATGAACACACAGCACCTACAGATGTGGGAGTACCGGAAAATGTCGGTGATTGTTATGAAAGGGTGGGTGGAAATGATGGACAATTACACTATGAGACGAACAGTACGGAGAAAAGTGACTCCACTTCTCAGATTTCAGAAAAAGCACCGACTTCTCTCAATACGGAGATGGAACCTGTTTCTTCTAGCAAGAGTTTATTAGGTGAATCATCTATTCCTAGTCTTTTCAGCAGCTCTGGTCTACCCAAAACTTCCGGCTCACTATTGGGTTCATCTGGTCTTTTCTCCGGTTTTAAGCCTTCTTCGCTAACTGTTCCATATTCAGTTGCTACTACTGAGTCTGGACTTCCGTCTAGTAGTTGCACGGGACTTTTCAAATCATTTTTGCCAGTGAATACAGTTCCAAGTTCAACCACCACTCCATT                                                                                                                                                                                                      ]
[-] EMBL CD188498             [                                                                                                                                                                                                                                GTGACTCCACTTCTCAGATTTCAGAAAAAGCACCGACTTCTCTCAATACGGAGATGGAACCTGTTTCTTCTAGCAAGAGTTTATTAGGTGAATCATCTATTCCTAGTCTTTTCAGCAGCTCTGGTCTACCCAAAACTTCCGGCTCACTATTGGGTTCATCTGGTCTTTTCTCCGGTTTTAAGCCTTCTTCGCTAACTGTTCCATATTCAGTTGCTACTACTGAGTCTGGACTTCCGTCTAGTAGTTGCACGGGACTTTTCAAATCATTTTTGCCAGTGAATACAGTTCCAAGTTCAACCACCACTCCATTACTTTTTAAACCTTCTACATTCTCTGCTTCAATTGCAGCTTCCAAAGAA TCTCAGAG CTCTGGTGATTCTAGCACATCTCGGCCAAAGATTCAACCCATTGTCTGGGATTCCTTTGACCCTTCTACTGCTCAGTCAAGTATATCAGATAGTGCATGTACTTGTGGCCCGGTTCGAAGAAAAAAATGGTGTCCTGTT]
[-] EMBL CD138919             [                                                                                                                                                                                                                                                                                               TTTCTTCTAGCAAGAGTTTATTAGGTGAATCATCTATTCCTAGTCTTTTCAGCAGCTCTGGTCTACCCAAAACTTCCGGCTCACTATTGGGTTCATCTGGTCTTTTCTCCGGTTTTAAGCCTTCTTCGCTAACTGTTCCATATTCAGTTGCTACTACTGAGTCAGGACTTCCGTCTAGTAGTTGCACGGGACTTTTCAAATCATTTTTGCCAGTGAATACAGTTCCAAGTTCAACCACCACTCCATTACTTTTTAAACCTTCTACATTCTCTGCTTCAATTGCAGCTTCCAAAGAA TCTCAGAG CTCTGGTGATTCTAGCA                                                                                                                          ]
[-] EMBL CD134282             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAAAGAAGTCTCAGAGCCCCTGGTGATTCTAGCACATCTCGGCCAAAGATTCAACCCATTGTCTGGGATTCCTTTGACCCTTCTACTGCTCAGTCAAGTATATCAGATA                                               ]




>consensus_8311#0
AGAAGTAATCGAATTGAGTAGTGGTTCTGATGATGATACGCAGCCACGTGATGCTGATGG
TGAGGAGCATTACTCTTCTGGTGTGGACAATTACGGCAACGAGGAAACAAATGAACACAC
AGCACCTACAGATGTGGGAGTACCGGAAAATGTCGGTGATTGTTATGAAAGGGTGGGTGG
AAATGATGGACAATTACACTATGAGACGAACAGTACGGAGAAAAGTGACTCCACTTCTCA
GATTTCAGAAAAAGCACCGACTTCTCTCAATACGGAGATGGAACCTGTTTCTTCTAGCAA
GAGTTTATTAGGTGAATCATCTATTCCTAGTCTTTTCAGCAGCTCTGGTCTACCCAAAAC
TTCCGGCTCACTATTGGGTTCATCTGGTCTTTTCTCCGGTTTTAAGCCTTCTTCGCTAAC
TGTTCCATATTCAGTTGCTACTACTGAGTCTGGACTTCCGTCTAGTAGTTGCACGGGACT
TTTCAAATCATTTTTGCCAGTGAATACAGTTCCAAGTTCAACCACCACTCCATTACTTTT
TAAACCTTCTACATTCTCTGCTTCAATTGCAGCTTCCAAAGAATCTCAGAGCTCTGGTGA
TTCTAGCACATCTCGGCCAAAGATTCAACCCATTGTCTGGGATTCCTTTGACCCTTCTAC
TGCTCAGTCAAGTATATCAGATAGTGCATGTACTTGTGGCCCGGTTCGAAGAAAAAAATG
GTGTCCTGTT

consensusID : consensus_8311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 419
fasta sequence

                              [CTTCACCTGTTTGGATAGATCGGAACACGTTTGTTTAAGTCTACAAGTCTCTCGATGGTAAAATCCAGCACGTCGCTCACTCTCTCGCTTTTGCAACTGAGTTTCTTCTAACTTCTTCGTTGCACATTCATAACAAGACGTAAGTTCTTTCAACTCCGTTTGTAATTTTCGATACTCTTCTTGTTGGTTCCGTAGGAGAGGAGCTTTTTCTTTGAGCTCATCGACCATCTGTTCCACATACTCCGTTAATCGTTGTTTATCAAGCTTCAGCTGGTCTCGATCTTCAACAACTTGCACATAATCTGCATACAACTGTGTTAAACTATGCCCACGCTTTAAAGCGCTCAACGTAGCGGCTACAGATGTGGAGTACCGGAAAATGTCGGTGATTGTTATGAAAGGGTGGGTGGAAATGATGG]

[+] EMBL CD137079             [CTTCACCTGTTTGGATAGATCGGAACACGTTTGTTTAAGTCTACAAGTCTCTCGATGGTAAAATCCAGCACGTCGCTCACTCTCTCGCTTTTGCAACTGAGTTTCTTCTAACTTCTTCGTTGCACATTCATAACAAGACGTAAGTTCTTTCAACTCCGTTTGTAATTTTCGATACTCTTCTTGTTGGTTCCGTAGGAGAGGAGCTTTTTCTTTGAGCTCATCGACCATCTGTTCCACATACTCCGTTAATCGTTGTTTATCAAGCTTCAGCTGGTCTCGATCTTCAACAACTTGCACATAATCTGCATACAACTGTGTTAAACTATGCCCACGCTTTAAAGCGCTCAACGTAGCGGCTACAGATGTGGAGTACCGGAAAATGTCGGTGATTGTTATGAAAGGGTGGGTGGAAATGATGG]
[-] EMBL CD125336             [           TGGATAGATCGGAACACGTTTGTTTAAGTCTACAAGTCTCTCGATGGTAAAATTCAGCACGTCGCTCACTCTCTCGCTTTTGCAACTGAGTTTCTTCTAACTTCTTCGTTGCACATTCATAACAAGACGTAAGTTCTTTCAACTCCGTTTGTAATTTTCGATACTCTTCTTGTTGGTTCCGTAGGAGAGGAGCTTTTTCTTTGAGCTCATCGACCATCTGTTCCACATACTCCGTTAATCGTTGTTTATCAAGCTTCAGCTGGTCTCGtgg                                                                                                                                         ]




>consensus_8311#1
CTTCACCTGTTTGGATAGATCGGAACACGTTTGTTTAAGTCTACAAGTCTCTCGATGGTA
AAATCCAGCACGTCGCTCACTCTCTCGCTTTTGCAACTGAGTTTCTTCTAACTTCTTCGT
TGCACATTCATAACAAGACGTAAGTTCTTTCAACTCCGTTTGTAATTTTCGATACTCTTC
TTGTTGGTTCCGTAGGAGAGGAGCTTTTTCTTTGAGCTCATCGACCATCTGTTCCACATA
CTCCGTTAATCGTTGTTTATCAAGCTTCAGCTGGTCTCGATCTTCAACAACTTGCACATA
ATCTGCATACAACTGTGTTAAACTATGCCCACGCTTTAAAGCGCTCAACGTAGCGGCTAC
AGATGTGGAGTACCGGAAAATGTCGGTGATTGTTATGAAAGGGTGGGTGGAAATGATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8311#0      AGAAGTAATCGAATTGAGTAGTGGTTCTGATGATGATACGCAGCCACGTGATGCTGATGG 60
consensus_8311#1      ------------------------------------------------------------
                                                                                  

consensus_8311#0      TGAGGAGCATTACTCTTCTGGTGTGGACAATTACGGCAACGAGGAAACAAATGAACACAC 120
consensus_8311#1      ------------------------------------------------------------
                                                                                  

consensus_8311#0      AGCACCTACAGATGTGGGAGTACCGGAAAATGTCGGTGATTGTTATGAAAGGGTGGGTGG 180
consensus_8311#1      ------------------------------------------------------------
                                                                                  

consensus_8311#0      AAATGATGGACAATTACACTATGAGACGAACAGTACGGAGAAAAGTGACTCCACTTCTCA 240
consensus_8311#1      ------------------------------------------------------------
                                                                                  

consensus_8311#0      GATTTCAGAAAAAGCACCGACTTCTCTCAATACGGAGATGGAACCTGTTTCTTCTAGCAA 300
consensus_8311#1      --------------------------------------CTTCACCTGTTTGGATAGATCG 22
                                                                ********          

consensus_8311#0      GAGTTTATTAGGTGAATCATCTATTCCTAGTCTTTTCAGCAGCTCTGGTCTA-CCCAAAA 359
consensus_8311#1      GAACACGTTTGTTTAA--GTCTA---CAAGTCTCTCGA-------TGGTAAAATCCAGCA 70
                      **     ** * * **   ****   * ***** *  *       ****  *  ***  *

consensus_8311#0      CTTCCGGCTCACTATTGGGTTCATCTGGTCTTTTCTCCGGTTTTAAGCCTTCTTCGCTAA 419
consensus_8311#1      CGTC--GCTCACTCTCTCGCTTTTGCAACTGAGTTTC---TTCTAA--CTTCTTCGTTGC 123
                      * **  ******* *   * *  *         * **   ** ***  ******** *  

consensus_8311#0      CTGTTCCATATTCAGTTGCTACTACTGAGTCTGGACTTCCGTCTAGTAGTTGCACGGGAC 479
consensus_8311#1      ACATTC-ATAACAAGACGTAAGTTCT-----TTCAACTCCGTTT-GTAATTTT-CGATAC 175
                         *** ***   **  *  * * **     *  *  ***** * *** **   **  **

consensus_8311#0      TTTTCAAATCATTTTTGCCAGTGAATACAGTTCC----AAGTTCAACCACCACTCCATTA 535
consensus_8311#1      TCTTCTTGTTGGTTCCGTAGGAGAGGAGCTTTTTCTTTGAGCTCATCGACCA-TCTGTT- 233
                      * ***   *   **  *   * **  *   **       ** *** * **** **  ** 

consensus_8311#0      CTTTTTAAACCTTCTACATTCTCTGCTTCAATTGCAGCTTCCAAAGAATCTCAGAGCTCT 595
consensus_8311#1      CCACATACTCCGTTAATCGTTGTTTATCAAGCTTCAGCTGGTCTCGATCTTCAACAACTT 293
                      *    **  ** *  *   *   *  *  *  * *****      **   ***      *

consensus_8311#0      G---GTGATTCTAGCACATCTCGGCCAAAGATTCAACCCATTGTCTGGGATTCCTTTGAC 652
consensus_8311#1      GCACATAATCTGCATACAACTGTGTTAAA--CTATGCCCACGCTTTAAAGCGC--TCAAC 349
                      *    * **      *** **  *  ***   *   ****   * *      *  *  **

consensus_8311#0      CCTTCTACTGCTCAGTCAAGTATATCAGATAGTGCATGTACTTGTGGCCC--GGTTCGAA 710
consensus_8311#1      GTAGCGGCTACAGA-TGTGGAGTACCGGAAAATGTCGGTGATTGTTATGAAAGGGTGGGT 408
                          *  ** *  * *   *  ** * ** * **   **  ****       ** * *  

consensus_8311#0      GAAAAAAATGGTGTCCTGTT 730
consensus_8311#1      GGAAATGATGG--------- 419
                      * ***  ****