These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 909 fasta sequence [CTGAGTACAGTTTGCCTCAGTTCATAATTTATTTGAAAATCTTTTCAGTTAAATTGTAGTATATTTAAAATGTCTTAGATAGTTTTGTTTTTTGCTCCCATTTTGGATATCAATCCTTTGTAACATCTTGGACTTTATTTGATGTATCGCTTACACAAATTGATGATCATAATTATCATTTCATTCGTTCGACATTTCTCTGCGGATAACTCTTCCATGTCATTTGCCAAATATGTGGCCTCGCTATTGTTAATCTTAATACCTCGTTTCTTGTCCGTCTAATATTGTTTTTCTATGGGAAAACGTGGGAAATCTTATCGATGGGCTTTTACAATGTTTCATACTGTTTCGAAGACTTAAGTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTGTGAGTAATTTATGTTCAAAATTCCTAATCTGTTTTTTTTTAATTCTCTAGATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGNACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTNTGTTGGTTTTTCCACCATGTTTGTCAAAGGCATTCTACTGATCTCCCAGACATTCGTTATCATTAGAGCGAGATTCTTAGAACCAGTCCAANTGCCCACGATGAAGTGATTGACTAGATCTCGATCTTCTCAAGTGCATGCTGATCCCAAGCTTCTACGACTATACGCGAAGATAACTCTGAGGTACATATGTAGCA] [+] EMBL CD079700 [CTGAGTACAGTTTGCCTCAGTTCATAATTTATTTGAAAATCTTTTCAGTTAAATTGTAGTATATTTAAAATGTCTTAGATAGTTTTGTTTTTTGCTCCCATTTTGGATATCAATCCTTTGTAACATCTTGGACTTTATTTGATGTATCGCTTACACAAATTGATGATCATAATTATCATTTCATTCGTTCGACATTTCTCTGCGGATAACTCTTCCATGTCATTTGCCAAATATGTGGCCTCGCTATTGTTAATCTTAATACCTCGTTTCTTGTCCGTCTAATATTGTTTTTCTATGGGAAAACGTGGGAAATCTTATCGATGGGCTTTTACAATGTTTCATACTGTTTCGAAGACTTAAGTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTGTGAGTAATTTATGTTCAAAATTCCTAATCTGTTTTTTTTTAATTCTCTAGATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGNACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTNTGTTGGTTTTTCCACCATGTTTGTCAAAGGCATTCTACTGATCTCCCAGACATTCGTTATCATTAGAGCGAGATTCTTAGAACCAGTCCAANTGCCCACGATGAAGTGATTGACTAGATCTCGATCTTCTCAAGTGCATGCTGATCCCAAGCTTCTACGACTATACGCGAAGATAACTCTGAGGTACATATGTAGCA] consensusID : consensus_8312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 648 fasta sequence [TTTTACAATGTTTCATACTGTTTCGAAGACTTAAGTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTGTGAGTAATTTATGTTCAAAATTCCTAATCTGTTTTTTTTTAATTCTCTAGATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCCCAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATCATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCCCGGATTGAAAAGTGATATGAACTAAGATCTCGGAATTTCTTTCTCAAAGTTGCAATGTCTTGATTCCACATATGCTTTTCTTACAGTACTTTATTACCGTCGAAATGTATAATCTTTCTTTGTATGTGTTACATTTATTGTTTTATGCAAATAAA] [-] EMBL CD073959 [TTTTACAATGTTTCATACTGTTTCGAAGACTTAAGTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTGTGAGTAATTTATGTTCAAAATTCCTAATCTGTTTTTTTTTAATTCTCTAGATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCCCAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATCATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCCCGGATTGAAAAGTGATATGAACTAAGATCTCGGAATTTCTTTCTCAAAGTTGCAATGTCTTGATTCCACATATGCTTTTCTTACAGTACTTTATTACCGTCGAAATGTATAATCTTTCTTTGTATGTGTTACATTTATTGTTTTATGCAAATAAA] [-] EMBL CD076234 [ AATTTCTTTCTCAAAGTTGCAATGTTTTGATTCCACATATGCTTTTCTCACAGTACTTTATTACCGTCGAAATGAATAATCTTTCTTTGTATGTGTTACAGTTATTGTTTTATGCAAAAAAA] consensusID : consensus_8312#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 529 fasta sequence [GGCTTCTGTTCAAAATGGTCGTGTTAATAGTGTCCTAGAAGTTAGTCGATCATTTGGTGACTATCAGTTCAAGAAACAAGGTGTTACTTGTATTCCGGATGTAAAAAAGTGTCAGCTAACAGATAATGATCAATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATCATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCACGGATTGAAGAGTGATATGAACTAAGATCTCGGAATTTCTTTCTCAAA] [+] EMBL CD148280 [GGCTTCTGTTCAAAATGGTCGTGTTAATAGTGTCCTAGAAGTTAGTCGATCATTTGGTGACTATCAGTTCAAGAAACAAGGTGTTACTTGTATTCCGGATGTAAAAAAGTGTCAGCTAACAGATAATGATCAATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCGCAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCACTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATG ] [-] EMBL CD066991 [ AGTCGATCATTTGGTGACTATCAGTTCAAGAAACAAGGTGTTACTTGTATTCCGGATGTGAAAAAGTGTCAGCTAACAGATAATGATCAATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCGCTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCGATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATCATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCACGGATTGAAGAGTGATATGAACTAAGATCTCGGAATTTCTTTCTCAAA] [+] EMBL CD111833 [ TGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGATCTGCATTTTGTTGGTTTTTCC ACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8312#0 CTGAGTACAGTTTGCCTCAGTTCATAATTTATTTGAAAATCTTTTCAGTTAAATTGTAGT 60 consensus_8312#1 ------------------------------------------------------------ consensus_8312#2 ------------------------------------------------------------ consensus_8312#0 ATATTTAAAATGTCTTAGATAGTTTTGTTTTTTGCTCCCATTTTGGATATCAATCCTTTG 120 consensus_8312#1 ------------------------------------------------------------ consensus_8312#2 ------------------------------------------------------------ consensus_8312#0 TAACATCTTGGACTTTATTTGATGTATCGCTTACACAAATTGATGATCATAATTATCATT 180 consensus_8312#1 ------------------------------------------------------------ consensus_8312#2 ------------------------------------------------------------ consensus_8312#0 TCATTCGTTCGACATTTCTCTGCGGATAACTCTTCCATGTCATTTGCCAAATATGTGGCC 240 consensus_8312#1 ------------------------------------------------------------ consensus_8312#2 ------------------------------------------------------------ consensus_8312#0 TCGCTATTGTTAATCTTAATACCTCGTTTCTTGTCCGTCTAATATTGTTTTTCTATGGGA 300 consensus_8312#1 ------------------------------------------------------------ consensus_8312#2 ------------------------------------------------------------ consensus_8312#0 AAACGTGGGAAATCTTATCGATGGGCTTTTACAATGTTTCATACTGTTTCGAAGACTTAA 360 consensus_8312#1 --------------------------TTTTACAATGTTTCATACTGTTTCGAAGACTTAA 34 consensus_8312#2 --------------------------------------GGCTTCTGTTCAAAATGGTCGT 22 * ***** ** * consensus_8312#0 GTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTG 420 consensus_8312#1 GTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTG 94 consensus_8312#2 GTTAATAGTGTCCTAGAAGTTAGTCGATCATTT--GGTGACTA-TCAGTTCAAGAAACAA 79 ** *** * ** * ** ** **** * ** * ** * ** consensus_8312#0 TGAGTAATTTATGTTCAAAAT-TCCTAATCTGTTTTTTTTTAATTCTCTA--GATTTTTG 477 consensus_8312#1 TGAGTAATTTATGTTCAAAAT-TCCTAATCTGTTTTTTTTTAATTCTCTA--GATTTTTG 151 consensus_8312#2 GGTGTTACTTGTATTCCGGATGTAAAAAAGTGTCAGCTAACAGATAATGATCAATTTTTG 139 * ** * ** * *** ** * ** *** * * * * ******* consensus_8312#0 TTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACT 537 consensus_8312#1 TTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACT 211 consensus_8312#2 TTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACT 199 ************************************************************ consensus_8312#0 CATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAAT 597 consensus_8312#1 CATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCCCAAAAT 271 consensus_8312#2 CATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAAT 259 ***************************************************** ****** consensus_8312#0 GGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGNACTCAGTATGCACG 657 consensus_8312#1 GGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACG 331 consensus_8312#2 GGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACG 319 ********************************************* ************** consensus_8312#0 CATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTNTGTTG 717 consensus_8312#1 CATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTG 391 consensus_8312#2 CATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTG 379 ****************************************************** ***** consensus_8312#0 GTTTTTCCA-CCATGTTTGTCAAA-GGCATTCTACTGATCTCCCAG-ACATTCGT-TATC 773 consensus_8312#1 GTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATC 451 consensus_8312#2 GTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATC 439 ********* ************** ********************* ******** **** consensus_8312#0 ATT-AGAGCGA-GATTCTT-AGAACCAG---TCCAANTGCCCACGAT---GAAGTGATT- 823 consensus_8312#1 ATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCCCGGATTGAAAAGTGATAT 511 consensus_8312#2 ATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCACGGATTGAAGAGTGATAT 499 *** ******* ******* ******* * ** **** *** ****** consensus_8312#0 -GACTA-GATCTCGA-----TCTTCTCAAG--TGCA---TGCTGATCCCAA----GCTTC 867 consensus_8312#1 GAACTAAGATCTCGGAATTTCTTTCTCAAAGTTGCAATGTCTTGATTCCACATATGCTTT 571 consensus_8312#2 GAACTAAGATCTCGGAATTTCTTTCTCAAA------------------------------ 529 **** ******* ******* consensus_8312#0 TACGACTATACG----------CGAAG---ATAACTCTGAGGTACATATGTAGCA----- 909 consensus_8312#1 TCTTACAGTACTTTATTACCGTCGAAATGTATAATCTTTCTTTGTATGTGTTACATTTAT 631 consensus_8312#2 ------------------------------------------------------------ consensus_8312#0 ----------------- consensus_8312#1 TGTTTTATGCAAATAAA 648 consensus_8312#2 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||