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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 909 fasta sequence
[CTGAGTACAGTTTGCCTCAGTTCATAATTTATTTGAAAATCTTTTCAGTTAAATTGTAGTATATTTAAAATGTCTTAGATAGTTTTGTTTTTTGCTCCCATTTTGGATATCAATCCTTTGTAACATCTTGGACTTTATTTGATGTATCGCTTACACAAATTGATGATCATAATTATCATTTCATTCGTTCGACATTTCTCTGCGGATAACTCTTCCATGTCATTTGCCAAATATGTGGCCTCGCTATTGTTAATCTTAATACCTCGTTTCTTGTCCGTCTAATATTGTTTTTCTATGGGAAAACGTGGGAAATCTTATCGATGGGCTTTTACAATGTTTCATACTGTTTCGAAGACTTAAGTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTGTGAGTAATTTATGTTCAAAATTCCTAATCTGTTTTTTTTTAATTCTCTAGATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGNACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTNTGTTGGTTTTTCCACCATGTTTGTCAAAGGCATTCTACTGATCTCCCAGACATTCGTTATCATTAGAGCGAGATTCTTAGAACCAGTCCAANTGCCCACGATGAAGTGATTGACTAGATCTCGATCTTCTCAAGTGCATGCTGATCCCAAGCTTCTACGACTATACGCGAAGATAACTCTGAGGTACATATGTAGCA]
[+] EMBL CD079700 [CTGAGTACAGTTTGCCTCAGTTCATAATTTATTTGAAAATCTTTTCAGTTAAATTGTAGTATATTTAAAATGTCTTAGATAGTTTTGTTTTTTGCTCCCATTTTGGATATCAATCCTTTGTAACATCTTGGACTTTATTTGATGTATCGCTTACACAAATTGATGATCATAATTATCATTTCATTCGTTCGACATTTCTCTGCGGATAACTCTTCCATGTCATTTGCCAAATATGTGGCCTCGCTATTGTTAATCTTAATACCTCGTTTCTTGTCCGTCTAATATTGTTTTTCTATGGGAAAACGTGGGAAATCTTATCGATGGGCTTTTACAATGTTTCATACTGTTTCGAAGACTTAAGTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTGTGAGTAATTTATGTTCAAAATTCCTAATCTGTTTTTTTTTAATTCTCTAGATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGNACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTNTGTTGGTTTTTCCACCATGTTTGTCAAAGGCATTCTACTGATCTCCCAGACATTCGTTATCATTAGAGCGAGATTCTTAGAACCAGTCCAANTGCCCACGATGAAGTGATTGACTAGATCTCGATCTTCTCAAGTGCATGCTGATCCCAAGCTTCTACGACTATACGCGAAGATAACTCTGAGGTACATATGTAGCA]
consensusID : consensus_8312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 648 fasta sequence
[TTTTACAATGTTTCATACTGTTTCGAAGACTTAAGTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTGTGAGTAATTTATGTTCAAAATTCCTAATCTGTTTTTTTTTAATTCTCTAGATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCCCAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATCATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCCCGGATTGAAAAGTGATATGAACTAAGATCTCGGAATTTCTTTCTCAAAGTTGCAATGTCTTGATTCCACATATGCTTTTCTTACAGTACTTTATTACCGTCGAAATGTATAATCTTTCTTTGTATGTGTTACATTTATTGTTTTATGCAAATAAA]
[-] EMBL CD073959 [TTTTACAATGTTTCATACTGTTTCGAAGACTTAAGTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTGTGAGTAATTTATGTTCAAAATTCCTAATCTGTTTTTTTTTAATTCTCTAGATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCCCAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATCATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCCCGGATTGAAAAGTGATATGAACTAAGATCTCGGAATTTCTTTCTCAAAGTTGCAATGTCTTGATTCCACATATGCTTTTCTTACAGTACTTTATTACCGTCGAAATGTATAATCTTTCTTTGTATGTGTTACATTTATTGTTTTATGCAAATAAA]
[-] EMBL CD076234 [ AATTTCTTTCTCAAAGTTGCAATGTTTTGATTCCACATATGCTTTTCTCACAGTACTTTATTACCGTCGAAATGAATAATCTTTCTTTGTATGTGTTACAGTTATTGTTTTATGCAAAAAAA]
consensusID : consensus_8312#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 529 fasta sequence
[GGCTTCTGTTCAAAATGGTCGTGTTAATAGTGTCCTAGAAGTTAGTCGATCATTTGGTGACTATCAGTTCAAGAAACAAGGTGTTACTTGTATTCCGGATGTAAAAAAGTGTCAGCTAACAGATAATGATCAATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATCATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCACGGATTGAAGAGTGATATGAACTAAGATCTCGGAATTTCTTTCTCAAA]
[+] EMBL CD148280 [GGCTTCTGTTCAAAATGGTCGTGTTAATAGTGTCCTAGAAGTTAGTCGATCATTTGGTGACTATCAGTTCAAGAAACAAGGTGTTACTTGTATTCCGGATGTAAAAAAGTGTCAGCTAACAGATAATGATCAATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCGCAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCACTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATG ]
[-] EMBL CD066991 [ AGTCGATCATTTGGTGACTATCAGTTCAAGAAACAAGGTGTTACTTGTATTCCGGATGTGAAAAAGTGTCAGCTAACAGATAATGATCAATTTTTGTTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCGCTCATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCGATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTGGTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATCATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCACGGATTGAAGAGTGATATGAACTAAGATCTCGGAATTTCTTTCTCAAA]
[+] EMBL CD111833 [ TGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAATGGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACGCATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGATCTGCATTTTGTTGGTTTTTCC ACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8312#0 CTGAGTACAGTTTGCCTCAGTTCATAATTTATTTGAAAATCTTTTCAGTTAAATTGTAGT 60
consensus_8312#1 ------------------------------------------------------------
consensus_8312#2 ------------------------------------------------------------
consensus_8312#0 ATATTTAAAATGTCTTAGATAGTTTTGTTTTTTGCTCCCATTTTGGATATCAATCCTTTG 120
consensus_8312#1 ------------------------------------------------------------
consensus_8312#2 ------------------------------------------------------------
consensus_8312#0 TAACATCTTGGACTTTATTTGATGTATCGCTTACACAAATTGATGATCATAATTATCATT 180
consensus_8312#1 ------------------------------------------------------------
consensus_8312#2 ------------------------------------------------------------
consensus_8312#0 TCATTCGTTCGACATTTCTCTGCGGATAACTCTTCCATGTCATTTGCCAAATATGTGGCC 240
consensus_8312#1 ------------------------------------------------------------
consensus_8312#2 ------------------------------------------------------------
consensus_8312#0 TCGCTATTGTTAATCTTAATACCTCGTTTCTTGTCCGTCTAATATTGTTTTTCTATGGGA 300
consensus_8312#1 ------------------------------------------------------------
consensus_8312#2 ------------------------------------------------------------
consensus_8312#0 AAACGTGGGAAATCTTATCGATGGGCTTTTACAATGTTTCATACTGTTTCGAAGACTTAA 360
consensus_8312#1 --------------------------TTTTACAATGTTTCATACTGTTTCGAAGACTTAA 34
consensus_8312#2 --------------------------------------GGCTTCTGTTCAAAATGGTCGT 22
* ***** ** *
consensus_8312#0 GTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTG 420
consensus_8312#1 GTCGATATGTTATTATTGATCAGGTGAATATTTTTAGAAACAAATCTTATTCTTTAATTG 94
consensus_8312#2 GTTAATAGTGTCCTAGAAGTTAGTCGATCATTT--GGTGACTA-TCAGTTCAAGAAACAA 79
** *** * ** * ** ** **** * ** * ** * **
consensus_8312#0 TGAGTAATTTATGTTCAAAAT-TCCTAATCTGTTTTTTTTTAATTCTCTA--GATTTTTG 477
consensus_8312#1 TGAGTAATTTATGTTCAAAAT-TCCTAATCTGTTTTTTTTTAATTCTCTA--GATTTTTG 151
consensus_8312#2 GGTGTTACTTGTATTCCGGATGTAAAAAAGTGTCAGCTAACAGATAATGATCAATTTTTG 139
* ** * ** * *** ** * ** *** * * * * *******
consensus_8312#0 TTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACT 537
consensus_8312#1 TTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACT 211
consensus_8312#2 TTAATAGCTTGTGATGGTCTATGGAAAAGTTTCCCTCCGAATGAAGCTGTTCATCTCACT 199
************************************************************
consensus_8312#0 CATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAAT 597
consensus_8312#1 CATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCCCAAAAT 271
consensus_8312#2 CATGAGCTTTTGATGCAAGAGATTAAAAACTATAAAAATGAACATAGAGAATCACAAAAT 259
***************************************************** ******
consensus_8312#0 GGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGNACTCAGTATGCACG 657
consensus_8312#1 GGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACG 331
consensus_8312#2 GGTCAATGTACTGATTATTCGAGGATATTGTGTCAACGACACCTGGACTCAGTATGCACG 319
********************************************* **************
consensus_8312#0 CATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTNTGTTG 717
consensus_8312#1 CATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTG 391
consensus_8312#2 CATTTGGTTAGTGAAGCTGTTCTTCGTATGTCAGGTGATAATGTGACCTGCATTTTGTTG 379
****************************************************** *****
consensus_8312#0 GTTTTTCCA-CCATGTTTGTCAAA-GGCATTCTACTGATCTCCCAG-ACATTCGT-TATC 773
consensus_8312#1 GTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATC 451
consensus_8312#2 GTTTTTCCAACCATGTTTGTCAAAAGGCATTCTACTGATCTCCCAGGACATTCGTCTATC 439
********* ************** ********************* ******** ****
consensus_8312#0 ATT-AGAGCGA-GATTCTT-AGAACCAG---TCCAANTGCCCACGAT---GAAGTGATT- 823
consensus_8312#1 ATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCCCGGATTGAAAAGTGATAT 511
consensus_8312#2 ATTCAGAGCGAAGATTCTTTAGAACCAAGTTCCAAATTGCCACGGATTGAAGAGTGATAT 499
*** ******* ******* ******* * ** **** *** ******
consensus_8312#0 -GACTA-GATCTCGA-----TCTTCTCAAG--TGCA---TGCTGATCCCAA----GCTTC 867
consensus_8312#1 GAACTAAGATCTCGGAATTTCTTTCTCAAAGTTGCAATGTCTTGATTCCACATATGCTTT 571
consensus_8312#2 GAACTAAGATCTCGGAATTTCTTTCTCAAA------------------------------ 529
**** ******* *******
consensus_8312#0 TACGACTATACG----------CGAAG---ATAACTCTGAGGTACATATGTAGCA----- 909
consensus_8312#1 TCTTACAGTACTTTATTACCGTCGAAATGTATAATCTTTCTTTGTATGTGTTACATTTAT 631
consensus_8312#2 ------------------------------------------------------------
consensus_8312#0 -----------------
consensus_8312#1 TGTTTTATGCAAATAAA 648
consensus_8312#2 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||