cluster # 8318

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Schistosoma mansoni
cluster # 8318 cluster # 8318 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8318#0 length = 1104 sequences # 4

consensus_8318#1 length = 443 sequences # 1
consensus_8318#2 length = 418 sequences # 1

consensusID : consensus_8318#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1104
fasta sequence

                              [AAAAGTTTTCTCTTTTGTCACTTAATGATAACAATCAAATGAAGTGTATAATACAAAGTTACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATGGGTTCTTCAACATCGAAGCATCCTTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCTGATATAGGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCTGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATTCTGCTACGATCGGTTTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCTATTCGCGGTTATTTTAATCTGGTATTGTTGCTCACGAAAAAAAAGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGGATAGTAATAATAATAATAATAGTAATAATCCAAACGATGAAACTGATGTGAACAATGTAACACCATATGCTAGGTTTGTTAATCTAGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAAATATGATTTAAATGATCCGATGTCAACATATACTTACGAAACACAAGGTCAAGTTCATTTAGTTGAAATTGATAATTCAACTGAAACATATTTAAATAGGAATACAATTGATGATAAAGAAACTTCTTATTCAGAATATGGTTTATTAACTGAAAGATCAGTAACAGCACAACCAGTATTACTTAATCAACGGGAAACGATTGCTTAACAAAGAAATATTCATTACTACATAATAATCAGTAGATATATATGTTCAATTTACTATGTCAATTTACAATACTTTTCCTAAGATTACTATACACATTAAAGTTGGCTACATATCGAAACATTNTTTTAATACANGATGC-ACTAATCATTNTATTTCTTATAAAAACTGTCTGAAAAACACTTC]

[+] EMBL CD183657             [AAAAGTTTTCTCTTTTGTCACTTAATGATAACAATCAAATGAAGTGTATAATACAAAGTTACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATGGGTTCTTCAACATCGAAGCATCCTTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCTGATATAGGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCTGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATTCTGCTACGATCGGTTTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCTATTCGCGGTTATTTTAATCTGGTATTGTTGCTCACGAAAAAAAAGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGGATAGTAATAATAATAATAATAGTAATAATCCAAACGATGAAACTGATGTGAACAATGTAACACCATATGCTAGGTTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD166891             [                                                                                                                                   CAAAATTTTTTTCAGAGACGTTCCTCGCTGATATATGTTGCGACAATAAAGGTACTGTTTTGTGCGAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCTGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATTGTGCTACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD082364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGAAAATTACCAATCTGAACGATTGCCATCTTGAACATGCCTATCTACTCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGGATAGTAATAATAATAATAATAGTAATAATCCAAACGATGAAACTGATGTGAACAATGTAACACCATATGCTAGTTTTGTTAATCTAGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAAATATGATTTAAATGATCCGATGTCAACATATACTTACGAAACACAAGGTCAAGTTCATTTAGTTGAAATTGATAATTCAACTGAAACATATTTAAATAGGAATACAATTGATGATAAAGAAACTTCTTATTCAGAATATGGTTTATTAACTGAAAGATCAGTAACAGCACAACCAGTATTACTTAATCAACGGGAAACGATTGCTTAACAAAGAAATATTCATTACTACATAATAATCAGTAGATATATATGTTCAATTTACTATGTCAATTTACAATACTTTTCCTAAGATTACTATACACATTAAAGTTGGCTACATATCGAAACATTNTTTTAATACANGATGC ACTAATCATTNTATTTCTTATAAAAACTGTCTGAAAAACACTTC]
[-] EMBL CD112087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATTTTGTTTGGGCTGAAGAGTTCGATTCATCTAAATATGATTTAAATGATCCGATGTCAACATATACTTACGAAACACAAGGTCAAGTTCATTTAGTTGAAATTGATAATTCAACTGAAACATATTTAAATAGGAATACAATTGATGATAAAGAAACTTCTTATTCAGAATATGGTTTATTAACTGAAAGATCAGTAACAGCACAACCAGTATTACTTAATCAACGGGAAACGATTGCTTAACAAAGAAATATTCATTACTACATAATAATCAGTAGATATATATGTTCAATTTACTATGTCAATTTACAATACTTTTCCTAAGATTACTATACACATTAAAGTTGGCTACATATCGAAACATTTTTTTAATACA GATGCAACTAATCATTTTATTTCTTATAAAAACTGTCTGAAAAACAC   ]




>consensus_8318#0
AAAAGTTTTCTCTTTTGTCACTTAATGATAACAATCAAATGAAGTGTATAATACAAAGTT
ACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATGGGTTCTTCAACATCGAAGCA
TCCTTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCTGATATAGGTTGCGACAATAA
AGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCT
TTATGTATCTGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACAT
TGGTGATTATTGTCAATTCTATGCTGGGTTCTATTCTGCTACGATCGGTTTGGTAGTGGG
ACTATTTGTTACACTTTTAATAATTCTATTCGCGGTTATTTTAATCTGGTATTGTTGCTC
ACGAAAAAAAAGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGC
CTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGGAT
AGTAATAATAATAATAATAGTAATAATCCAAACGATGAAACTGATGTGAACAATGTAACA
CCATATGCTAGGTTTGTTAATCTAGCACCAGGACAGACACAAGGATACTCTACTTCGCAA
TCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAAATATGAT
TTAAATGATCCGATGTCAACATATACTTACGAAACACAAGGTCAAGTTCATTTAGTTGAA
ATTGATAATTCAACTGAAACATATTTAAATAGGAATACAATTGATGATAAAGAAACTTCT
TATTCAGAATATGGTTTATTAACTGAAAGATCAGTAACAGCACAACCAGTATTACTTAAT
CAACGGGAAACGATTGCTTAACAAAGAAATATTCATTACTACATAATAATCAGTAGATAT
ATATGTTCAATTTACTATGTCAATTTACAATACTTTTCCTAAGATTACTATACACATTAA
AGTTGGCTACATATCGAAACATTNTTTTAATACANGATGCACTAATCATTNTATTTCTTA
TAAAAACTGTCTGAAAAACACTTC

consensusID : consensus_8318#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [TTTGGCAAACTTTGAACACCGAAACTAGGTCATCGAAATTTCCCAATAAGTATATGATCTCAAGTCCCCGACGTCAGTGACTATTACTCCGAACGATTTGGGTTAGGTAACTAAAATATATTTGAGTTAATAATAGTCAAAGCTCACGAAAAAAAAGGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGAATAGTAATAATAATAATAATAATAGTAATAATCCAAACGATGAAACTTATGTGAACAATGTAACACCATATGCTAGTNTTGTTAATCTAGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAAA]

[+] EMBL AI977074             [TTTGGCAAACTTTGAACACCGAAACTAGGTCATCGAAATTTCCCAATAAGTATATGATCTCAAGTCCCCGACGTCAGTGACTATTACTCCGAACGATTTGGGTTAGGTAACTAAAATATATTTGAGTTAATAATAGTCAAAGCTCACGAAAAAAAAGGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATGATGAATAGTAATAATAATAATAATAATAGTAATAATCCAAACGATGAAACTTATGTGAACAATGTAACACCATATGCTAGTNTTGTTAATCTAGCACCAGGACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAAA]




>consensus_8318#1
TTTGGCAAACTTTGAACACCGAAACTAGGTCATCGAAATTTCCCAATAAGTATATGATCT
CAAGTCCCCGACGTCAGTGACTATTACTCCGAACGATTTGGGTTAGGTAACTAAAATATA
TTTGAGTTAATAATAGTCAAAGCTCACGAAAAAAAAGGAGAGAAAAAGAAAATTACCAAG
CTGAACGATTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTT
GCGGAAGTAATCGTGCAATGATGAATAGTAATAATAATAATAATAATAGTAATAATCCAA
ACGATGAAACTTATGTGAACAATGTAACACCATATGCTAGTNTTGTTAATCTAGCACCAG
GACAGACACAAGGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGG
GTGAAGAGTTCGATTCATCTAAA

consensusID : consensus_8318#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [GAAGTGTATAATACAAAGTTACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATGGGTTCTTCAACATCGAAGCATCCCTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCTGATATAGGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCCGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATACTGCTACGATCGGATTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCTATTCACGGTTATTCTAATCTGGTATTGTTGCTCACGACATTCAAATCAGATGTGATGGAAGAACCTGCCAT]

[+] EMBL AI977578             [GAAGTGTATAATACAAAGTTACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATGGGTTCTTCAACATCGAAGCATCCCTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCTGATATAGGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGTGGGATTTGCGCTCTTTATGTATCCGACATAGACGACAAGTGCATTAAACGCTGCAAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATACTGCTACGATCGGATTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCTATTCACGGTTATTCTAATCTGGTATTGTTGCTCACGACATTCAAATCAGATGTGATGGAAGAACCTGCCAT]




>consensus_8318#2
GAAGTGTATAATACAAAGTTACATACTGTGAAAAGGGATAAATAATATCATCGTTGTATG
GGTTCTTCAACATCGAAGCATCCCTCCAATGCAAAATTTTTTTCAGAGACGTTCCTCGCT
GATATAGGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTA
AATGGTGGGATTTGCGCTCTTTATGTATCCGACATAGACGACAAGTGCATTAAACGCTGC
AAGTGTACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATACTGCT
ACGATCGGATTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCTATTCACGGTTATT
CTAATCTGGTATTGTTGCTCACGACATTCAAATCAGATGTGATGGAAGAACCTGCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8318#0      AAAAGTTTTCTCTTTTGTCACTTAATGATAACAATCAAATGAAGTGTATAATACAAAGTT 60
consensus_8318#2      ----------------------------------------GAAGTGTATAATACAAAGTT 20
consensus_8318#1      ----------------------------------TTTGGCAAACTTTGAACACCGAAACT 26
                                                               ** * *  *   * **  *

consensus_8318#0      ACATACTGTGAA------AAGGGATAAATAATATCA---TCGTTGTATGGGTT-CTTCAA 110
consensus_8318#2      ACATACTGTGAA------AAGGGATAAATAATATCA---TCGTTGTATGGGTT-CTTCAA 70
consensus_8318#1      AGGTCATCGAAATTTCCCAATAAGTATATGATCTCAAGTCCCCGACGTCAGTGACTATTA 86
                      *  *  *   **      **    ** ** ** ***    *      *  **  **   *

consensus_8318#0      CATCGAAGCATCCTTCCAATGCAA--AATTTTTTTCAGAGACGTTCCTCGCTGATAT--A 166
consensus_8318#2      CATCGAAGCATCCCTCCAATGCAA--AATTTTTTTCAGAGACGTTCCTCGCTGATAT--A 126
consensus_8318#1      CTCCGAACGATTTGGGTTAGGTAACTAAAATATATTTGAGTTAATAATAGTCAAAGCTCA 146
                      *  ****  **       * * **  **  * * *  ***    *  * *   *     *

consensus_8318#0      GGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGT 226
consensus_8318#2      GGTTGCGACAATAAAGGTACTGTTTTGTGCAAGGATGAGGGTTTACCGTGTTTAAATGGT 186
consensus_8318#1      CGAAAAAAAAGGAGAGAAAAAGAAAATTACCAAGCTGAACGATTGCCACCGAGAACATGC 206
                       *     * *  * **  *  *     * * * * ***  * ** **      **   * 

consensus_8318#0      GGGATTTGCGCTCTTTATGTATCTGACATAGACGACAAGTGCA-TTAAACGCTGCAAGTG 285
consensus_8318#2      GGGATTTGCGCTCTTTATGTATCCGACATAGACGACAAGTGCA-TTAAACGCTGCAAGTG 245
consensus_8318#1      CTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGTAATCGTGCAATG-ATGAA 265
                           *       ** **  *    **** *    *    * * *    *  ** * *  

consensus_8318#0      TACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATTCTGCTACGAT 345
consensus_8318#2      TACTGATGATTACATTGGTGATTATTGTCAATTCTATGCTGGGTTCTATACTGCTACGAT 305
consensus_8318#1      TAGTAATAATAATAATAATAATAGTAATAATCCAAACGATGAAACTTATGTGA--ACAAT 323
                      ** * ** ** * * *  * **  *  * *     * * **     ***      ** **

consensus_8318#0      CGGTTTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCT-ATTCGCGGTTATTTTAA 404
consensus_8318#2      CGGATTGGTAGTGGGACTATTTGTTACACTTTTAATAATTCT-ATTCACGGTTATTCTAA 364
consensus_8318#1      GTAACACCATATGCTAGTNTT-GTTAATCTAGCACCAGGACAGACACAAGGATACTCTAC 382
                                 **  * * ** ****  **   *  *   *  *  *  ** ** * ** 

consensus_8318#0      TCTGGTATTGTTGCTCACG-AAAAAAAAGAGAGAAAAAGAAAATTACCAAGC-TGAACGA 462
consensus_8318#2      TCTGGTATTGTTGCTCACG-ACATTCAAATCAGATGTGATGGAAGAACCTGC-CAT---- 418
consensus_8318#1      TTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTCGATTCATCTAA 442
                      *  *  ** ***        *     *     *         *                 

consensus_8318#0      TTGCCACCGAGAACATGCCTATCTAATCGAATTAATAGAAATAACATGGTTTGCGGAAGT 522
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      A----------------------------------------------------------- 443
                                                                                  

consensus_8318#0      AATCGTGCAATGATGGATAGTAATAATAATAATAATAGTAATAATCCAAACGATGAAACT 582
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      ------------------------------------------------------------
                                                                                  

consensus_8318#0      GATGTGAACAATGTAACACCATATGCTAGGTTTGTTAATCTAGCACCAGGACAGACACAA 642
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      ------------------------------------------------------------
                                                                                  

consensus_8318#0      GGATACTCTACTTCGCAATCGTTTAGTGTATACGAAAATGTTGGTTGGGGTGAAGAGTTC 702
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      ------------------------------------------------------------
                                                                                  

consensus_8318#0      GATTCATCTAAATATGATTTAAATGATCCGATGTCAACATATACTTACGAAACACAAGGT 762
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      ------------------------------------------------------------
                                                                                  

consensus_8318#0      CAAGTTCATTTAGTTGAAATTGATAATTCAACTGAAACATATTTAAATAGGAATACAATT 822
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      ------------------------------------------------------------
                                                                                  

consensus_8318#0      GATGATAAAGAAACTTCTTATTCAGAATATGGTTTATTAACTGAAAGATCAGTAACAGCA 882
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      ------------------------------------------------------------
                                                                                  

consensus_8318#0      CAACCAGTATTACTTAATCAACGGGAAACGATTGCTTAACAAAGAAATATTCATTACTAC 942
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      ------------------------------------------------------------
                                                                                  

consensus_8318#0      ATAATAATCAGTAGATATATATGTTCAATTTACTATGTCAATTTACAATACTTTTCCTAA 1002
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      ------------------------------------------------------------
                                                                                  

consensus_8318#0      GATTACTATACACATTAAAGTTGGCTACATATCGAAACATTNTTTTAATACANGATGCAC 1062
consensus_8318#2      ------------------------------------------------------------
consensus_8318#1      ------------------------------------------------------------
                                                                                  

consensus_8318#0      TAATCATTNTATTTCTTATAAAAACTGTCTGAAAAACACTTC 1104
consensus_8318#2      ------------------------------------------
consensus_8318#1      ------------------------------------------