cluster # 8324

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Schistosoma mansoni
cluster # 8324 cluster # 8324 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8324#0 length = 647 sequences # 2

consensus_8324#1 length = 500 sequences # 3
consensus_8324#2 length = 223 sequences # 1

consensusID : consensus_8324#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 647
fasta sequence

                              [GAATTGGACTCATAACCTATAACTTCTCGTCCCGAAAGTAGAAGTTACTTCATCAAAATCATTGGCATTTATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGGGGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGCGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTATGTTTTTAAATGATCTAATAAGATAACATTCACGAGGTACGATAATTTCATTCTAACGTTTTCTCATTAGCTCAGAGAATTTCCTTCCTGTCAATTGACCTAAACGTTTATTCACTCAATTATCACCTGCATTCGATATTTTAGTAAAATATGAATCCAAAATGCTTAATATATTTGACCGGATTGATCGAGCCTTTTTCGTTTTACAAAGGCCAGGACATT]

[-] EMBL CD163453             [GAATTGGACTCATAACCTATAACTTCTCGTCCCGAAAGTAGAAGTTACTTCATCAAAATCATTGGCATTTATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGGGGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGCGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACT                                                                                                                                                                                                                                                ]
[+] EMBL CD158099             [                                                                                                                                                                                                                                                                      GAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTATGTTTTTAAATGATCTAATAAGATAACATTCACGAGGTACGATAATTTCATTCTAACGTTTTCTCATTAGCTCAGAGAATTTCCTTCCTGTCAATTGACCTAAACGTTTATTCACTCAATTATCACCTGCATTCGATATTTTAGTAAAATATGAATCCAAAATGCTTAATATATTTGACCGGATTGATCGAGCCTTTTTCGTTTTACAAAGGCCAGGACATT]




>consensus_8324#0
GAATTGGACTCATAACCTATAACTTCTCGTCCCGAAAGTAGAAGTTACTTCATCAAAATC
ATTGGCATTTATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGG
GGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATC
TTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAG
CATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTC
ATGCGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTAT
TATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGC
AGGTATGTTTTTAAATGATCTAATAAGATAACATTCACGAGGTACGATAATTTCATTCTA
ACGTTTTCTCATTAGCTCAGAGAATTTCCTTCCTGTCAATTGACCTAAACGTTTATTCAC
TCAATTATCACCTGCATTCGATATTTTAGTAAAATATGAATCCAAAATGCTTAATATATT
TGACCGGATTGATCGAGCCTTTTTCGTTTTACAAAGGCCAGGACATT

consensusID : consensus_8324#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 500
fasta sequence

                              [ACGACTCTAGAGGATCCCCTCATAGGTTCGCAGGGATCATGCGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGGAATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACTAGAATACTCGGTAATATGCCAGCTGGTATAATAAGTCGAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAATACTGCATGCGCTTCTGGCCTACATTGCATTGGCGAAGGCTT]

[+] EMBL CD060743             [ACGACTCTAGAGGATCCCCTCATAGGTTCGCAGGGATCATGCGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGGAATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACTAGAATACTCGGTAATATGCCAGCTGGTATAATAAGTCTAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAATACTGCATGCGCTTCTGGCCTACATTGCATTGGCGAAGGCTT]
[+] EMBL CD060784             [                      cagccgCGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTTTTTTCTGCCTAGTCATGTTTTTGGGAGCATGGGGGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGGAATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACTAGAATACTCGGTAATATGCCAGCTGGTATAATAAGTCGAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAATACTGCATG                                 ]
[-] EMBL CD154820             [                                                                                                                                                                                                                           ATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGGAATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACAAGAATACTCGGTAATATGCCGGCTGGTATAATAAGTCGAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAATACTGCATGCGCTTCTGGCCTACA                  ]




>consensus_8324#1
ACGACTCTAGAGGATCCCCTCATAGGTTCGCAGGGATCATGCGGAATATCAAAGACGCTT
GATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAA
GAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGTGGTTTGGATATTTCTAAT
GACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTC
AAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTGTTTGTTTTGGAGTGGGA
TTGGATGGTCCAAATGAAGTTATGAATACATCATCAGGAATTTTAGCCGAAAGATACTCT
ACTATTGGGCCTCATGCTCTAACTAGAATACTCGGTAATATGCCAGCTGGTATAATAAGT
CGAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAATACTGCATGCGCTTCTGGCCTA
CATTGCATTGGCGAAGGCTT

consensusID : consensus_8324#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [CATGGACTGGCCCATGAGATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGGGGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTC]

[-] EMBL CD160892             [CATGGACTGGCCCATGAGATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGGGGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTC]




>consensus_8324#2
CATGGACTGGCCCATGAGATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACT
GGTTTGGGGGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTG
CAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTT
TTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8324#0      GAATTGGACTCATAACCTATAACTTCTCGTCCCGAAAGTAGAAGTTACTTCATCAAAATC 60
consensus_8324#2      -----------------------------------------------CATGGACTGGCCC 13
consensus_8324#1      ------------------------------------------------------------
                                                                                  

consensus_8324#0      ATTGGCATTTATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGG 120
consensus_8324#2      ATGAG-----ATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGG 68
consensus_8324#1      ------------------------------------------------------------
                                                                                  

consensus_8324#0      GGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATC 180
consensus_8324#2      GGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATC 128
consensus_8324#1      --------------ACGACTCTAGAGGATCCCC-TCATAGG-------TTCGCAGGGATC 38
                                      *  *  ** * ****   * ** **       ** *********

consensus_8324#0      TTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAG 240
consensus_8324#2      TTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAG 188
consensus_8324#1      ATGCGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAG 98
                       ** ********************************************************

consensus_8324#0      CATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTC 300
consensus_8324#2      CATCGATGATCGAAAATTGGAAGAACAAAAGTCTC------------------------- 223
consensus_8324#1      CATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTC 158
                      ***********************************                         

consensus_8324#0      ATGCGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTAT 360
consensus_8324#2      ------------------------------------------------------------
consensus_8324#1      ATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTAT 218
                                                                                  

consensus_8324#0      TATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGC 420
consensus_8324#2      ------------------------------------------------------------
consensus_8324#1      TATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGC 278
                                                                                  

consensus_8324#0      AGGTATGTTTTTAAATGATCTAATAAGATAACATTCACGAGGTACGATAATTTCATTCTA 480
consensus_8324#2      ------------------------------------------------------------
consensus_8324#1      AGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGG 338
                                                                                  

consensus_8324#0      ACGTTTTCTCATTAGCTCAGAGAATTTCCTTCCTGTCAATTGACCTA-AACGTTTATTCA 539
consensus_8324#2      ------------------------------------------------------------
consensus_8324#1      AATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACTAGAATACTCGGTAA 398
                                                                                  

consensus_8324#0      CTCAATTATCACCTGCATTCGATATTTTAGTAAAATATGAATCCAAAATGCTTAATATAT 599
consensus_8324#2      ------------------------------------------------------------
consensus_8324#1      TATGCCAGCTGGTATAATAAGTCGAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAA 458
                                                                                  

consensus_8324#0      TTGACCGGATTGATCGAGCCTTTTTCGTTTTACAAAGGCCAGGACATT 647
consensus_8324#2      ------------------------------------------------
consensus_8324#1      TACTGCATGCGCTTCTGGCCTACATTGCATTGGCGAAGGCTT------ 500