These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 389 fasta sequence [CAATTCCCAAGGTCACGGTCTTGAAACACGTTTGAGTGTACATCATGACTCTAGGTGTAAACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAATGGCTTTGGGTCGTGCCTGTGGTGTATCCAGATCGGTGGCAGCCGTCGCTGTTACAGATAGTGAGGGCTCACAACTCAAACCTCTCGTC] [+] EMBL CD141425 [CAATTCCCAAGGTCACGGTCTTGAAACACGTTTGAGTGTACATCATGACTCTAGGTGTAAACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAATGGCTTTGGGTCGTGCCTGTGGTGTATCCAGATCGGTGGCAGCCGTCGCTGTTACAGATAGTGAGGGCTC ] [-] EMBL CD202488 [ TGAGTGCACATCATGACTCTAGGTGTAAACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAATGGCTTTGGGTCGTGCCTGTGGTGTATCCAGATCGGTGGCAGCCGTCGCTGTTACAGATAGTGAGGGCTCACAACTCAAACCTCTCGTC] [-] EMBL CD135634 [ GGTGTAAACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGCAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTG ] [-] EMBL CD202619 [ CCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCCCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAAT ] [-] EMBL CD164217 [ AAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAATGGCTTTG ] consensusID : consensus_8328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 160 fasta sequence [GGTATTGTGATGGACGGGGGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGAG] [-] EMBL BG930980 [GGTATTGTGATGGACGGGGGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8328#0 CAATTCCCAAGGTCACGGTCTTGAAACACGTTTGAGTGTACATCATGACTCTAGGTGTAA 60 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 ACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCA 120 consensus_8328#1 ----GGTATTGTGATGGACGGGGGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCA 56 * * ** ************************************* consensus_8328#0 AACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTA 180 consensus_8328#1 AACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTA 116 ************************************************************ consensus_8328#0 ACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTT 240 consensus_8328#1 ACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGAG---------------- 160 ******************************************* consensus_8328#0 TGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAA 300 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 TGGCTTTGGGTCGTGCCTGTGGTGTATCCAGATCGGTGGCAGCCGTCGCTGTTACAGATA 360 consensus_8328#1 ------------------------------------------------------------ consensus_8328#0 GTGAGGGCTCACAACTCAAACCTCTCGTC 389 consensus_8328#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||