These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 973 fasta sequence [GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGACTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAACTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATATTGTCGAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTTGAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAATCATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATGGATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACATATAAACGTACCATTCTCCTGTTTTATTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTGTTTGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTGATTTCCACCAAGCCAGGGTACCGTT] [+] EMBL CD084373 [GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGACTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAACTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATATTGTCGAAGATTATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTACAGCACTTGAAACAATAAACGAATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATAC ] [+] EMBL CD129697 [ CGAGGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGATATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTTGAAACAATAAACGTATTGGCCAAAATGTTTAGTGCGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCAT ] [+] EMBL CD129722 [ GAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTTGAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTT ] [-] EMBL CD168248 [ ATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAATCATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATGGATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACATATAAACGTACCATTCTCCTGTTTTATTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTGTTTGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTGATTTCCACCAAGCCAGGGTACCGTT] consensusID : consensus_8334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [TTATCCAAAATCACATATAAACGTACCATTCTCCTGTTATGTTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTCCTTATTCTTTGTGTTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCCTGGAACAATCTTCATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGACATCTTACAATCTCTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTTCTACGACTATTATAATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAACTAATGACAAAGAATAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGCAATTATCAAATACATTGACA] [+] EMBL AW017279 [TTATCCAAAATCACATATAAACGTACCATTCTCCTGTTATGTTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTCCTTATTCTTTGTGTTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCCTGGAACAATCTTCATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGACATCTTACAATCTCTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTTCTACGACTATTATAATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAACTAATGACAAAGAATAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGCAATTATCAAATACATTGACA] consensusID : consensus_8334#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [CCAGGAATTCGGCACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGGTAACTATTAAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCGTTACTTGTGTATAGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT] [+] EMBL CD077883 [CCAGGAATTCGGCACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGGTAACTATTAAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCGTTACTTGTGTATAGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8334#0 GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGA 60 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 CTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAA 120 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 CTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATA 180 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 TTGTCGAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTG 240 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 TTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTT 300 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 GAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACT 360 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 GCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGG 420 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 AAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATT 480 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 GAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAAT 540 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 CATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATG 600 consensus_8334#1 ------------------------------------------------------------ consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 GATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACA 660 consensus_8334#1 ---------------------------------------------TTATCCAAAATCACA 15 consensus_8334#2 ------------------------------------------------CCAGGAATTCGG 12 * *** consensus_8334#0 TATAAACGTACCATTCTCCTGTT-TTATTGGTACTTTAGTTTAT-GCACGAGGTTGTGTG 718 consensus_8334#1 TATAAACGTACCATTCTCCTGTT-ATGTTGGTACTTTAGTTTAT-GCACGAGGTTGTGTG 73 consensus_8334#2 CACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGGTAACTATT 72 * * * **** * * * ** * **** ** * * * consensus_8334#0 GAAGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTG 778 consensus_8334#1 GAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTCCTTATTCTTTGTG 133 consensus_8334#2 AAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCGTTAC---TTGTG 129 ** **** ** * * * *** ** *** *** * ** *** ***** consensus_8334#0 TTTGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTT 838 consensus_8334#1 TTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTT 193 consensus_8334#2 TATAGCAC-ATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT------------ 176 * * * * *** * * * * * * **** * * * * consensus_8334#0 ACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTA 898 consensus_8334#1 ACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTA 253 consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 CAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTG-----ATTTC 953 consensus_8334#1 CAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCCTGGAACAATCTT 313 consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 CACCAAGCCAGGGTACCGTT---------------------------------------- 973 consensus_8334#1 CATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGACATCTTACAATCT 373 consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 ------------------------------------------------------------ consensus_8334#1 CTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTTCTACGACTATTAT 433 consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 ------------------------------------------------------------ consensus_8334#1 AATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAACTAATGACAAAGAA 493 consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 ------------------------------------------------------------ consensus_8334#1 TAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAAAAAACATGCCATG 553 consensus_8334#2 ------------------------------------------------------------ consensus_8334#0 ----------------------------------- consensus_8334#1 CAGCTGCATTACCGCAATTATCAAATACATTGACA 588 consensus_8334#2 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||