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Schistosoma mansoni
cluster # 8334 cluster # 8334       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8334#0 length = 973 sequences # 4  
consensus_8334#1 length = 588 sequences # 1  
consensus_8334#2 length = 176 sequences # 1  

consensusID : consensus_8334#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 973
fasta sequence
                              [GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGACTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAACTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATATTGTCGAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTTGAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAATCATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATGGATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACATATAAACGTACCATTCTCCTGTTTTATTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTGTTTGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTGATTTCCACCAAGCCAGGGTACCGTT]

[+] EMBL CD084373             [GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGACTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAACTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATATTGTCGAAGATTATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTACAGCACTTGAAACAATAAACGAATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD129697             [                                                                                                                                                                                        CGAGGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGATATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTTGAAACAATAAACGTATTGGCCAAAATGTTTAGTGCGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD129722             [                                                                                                                                                                                         GAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTTGAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD168248             [                                                                                                                                                                                                                                                                                                                                                                                                            ATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAATCATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATGGATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACATATAAACGTACCATTCTCCTGTTTTATTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTGTTTGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTGATTTCCACCAAGCCAGGGTACCGTT]


>consensus_8334#0 GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGA CTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAA CTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATA TTGTCGAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTG TTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTT GAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACT GCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGG AAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATT GAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAAT CATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATG GATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACA TATAAACGTACCATTCTCCTGTTTTATTGGTACTTTAGTTTATGCACGAGGTTGTGTGGA AGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTGTT TGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTAC CATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACA ATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTGATTTCCACCAAG CCAGGGTACCGTT



consensusID : consensus_8334#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence
                              [TTATCCAAAATCACATATAAACGTACCATTCTCCTGTTATGTTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTCCTTATTCTTTGTGTTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCCTGGAACAATCTTCATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGACATCTTACAATCTCTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTTCTACGACTATTATAATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAACTAATGACAAAGAATAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGCAATTATCAAATACATTGACA]

[+] EMBL AW017279             [TTATCCAAAATCACATATAAACGTACCATTCTCCTGTTATGTTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTCCTTATTCTTTGTGTTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCCTGGAACAATCTTCATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGACATCTTACAATCTCTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTTCTACGACTATTATAATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAACTAATGACAAAGAATAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGCAATTATCAAATACATTGACA]


>consensus_8334#1 TTATCCAAAATCACATATAAACGTACCATTCTCCTGTTATGTTGGTACTTTAGTTTATGC ACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTC CTTATTCTTTGTGTTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATT TAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGA AGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATC CTGGAACAATCTTCATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGA CATCTTACAATCTCTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTT CTACGACTATTATAATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAAC TAATGACAAAGAATAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAA AAAACATGCCATGCAGCTGCATTACCGCAATTATCAAATACATTGACA



consensusID : consensus_8334#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence
                              [CCAGGAATTCGGCACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGGTAACTATTAAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCGTTACTTGTGTATAGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT]

[+] EMBL CD077883             [CCAGGAATTCGGCACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGGTAACTATTAAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCGTTACTTGTGTATAGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT]


>consensus_8334#2 CCAGGAATTCGGCACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATA CTGGTAACTATTAAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCG TTACTTGTGTATAGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8334#0      GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGA 60
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      CTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAA 120
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      CTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATA 180
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      TTGTCGAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTG 240
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      TTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTT 300
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      GAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACT 360
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      GCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGG 420
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      AAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATT 480
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      GAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAAT 540
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      CATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATG 600
consensus_8334#1      ------------------------------------------------------------
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      GATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACA 660
consensus_8334#1      ---------------------------------------------TTATCCAAAATCACA 15
consensus_8334#2      ------------------------------------------------CCAGGAATTCGG 12
                                                                       *   ***    

consensus_8334#0      TATAAACGTACCATTCTCCTGTT-TTATTGGTACTTTAGTTTAT-GCACGAGGTTGTGTG 718
consensus_8334#1      TATAAACGTACCATTCTCCTGTT-ATGTTGGTACTTTAGTTTAT-GCACGAGGTTGTGTG 73
consensus_8334#2      CACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGGTAACTATT 72
                       *  *  *   ****    * *       *  **  *   ****   **  *    * * 

consensus_8334#0      GAAGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTG 778
consensus_8334#1      GAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTCCTTATTCTTTGTG 133
consensus_8334#2      AAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCGTTAC---TTGTG 129
                       ** ****      ** * *  * *** **    ***  *** * ** ***    *****

consensus_8334#0      TTTGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTT 838
consensus_8334#1      TTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTT 193
consensus_8334#2      TATAGCAC-ATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT------------ 176
                      * * * *  ***  * *  * *   *     *   **** *  * * *            

consensus_8334#0      ACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTA 898
consensus_8334#1      ACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTA 253
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      CAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTG-----ATTTC 953
consensus_8334#1      CAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCCTGGAACAATCTT 313
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      CACCAAGCCAGGGTACCGTT---------------------------------------- 973
consensus_8334#1      CATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGACATCTTACAATCT 373
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      ------------------------------------------------------------
consensus_8334#1      CTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTTCTACGACTATTAT 433
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      ------------------------------------------------------------
consensus_8334#1      AATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAACTAATGACAAAGAA 493
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      ------------------------------------------------------------
consensus_8334#1      TAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAAAAAACATGCCATG 553
consensus_8334#2      ------------------------------------------------------------
                                                                                  

consensus_8334#0      -----------------------------------
consensus_8334#1      CAGCTGCATTACCGCAATTATCAAATACATTGACA 588
consensus_8334#2      -----------------------------------
                                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)