These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 741 fasta sequence [GGTTTATTACTCCTGAGTTGTCAATCATCTAGTTGTGTCAGAGATATTCGGCT-TACATTTTATTCTCTTTCACAATCGTTTCTAGTGGTTAATTAACTGGGATTCATTGGTTTAAGTATCCAAAAAGTAATTAATAGAACTTTTTACTTCCCGTAACTAAGTTTGTGTGCTCAGGTGCTTTGTTAATCCCTGACTTAAGTTAATCCATCTTTGTGTATCTAAGATTTAAGACATCTTGTGTTAATCTATAGGCTAGAAATAAATAAATATGACATTCTTGATG-AAGATCCAAGGTCTTGACAATTACATTGTCAGTTTCTTAGTAAAGATAACACTATTTTGTTCCTCCGTCACTATTTTTGGTAATTTGTTGTTATGAACAAAAATATTTCGTTATCACTGTGGTAAACTATGTGTTCGTGATTGTACAGTTTTGAGAATAAATTCTGTGGAAAGAGAATATTTCGTCCGACTAAAATGTCGTGTTCCGTTAGATATGTTACATAATATTAATTAATTTCACCGATACCCTACTCATTTCGATCTATGAAGAAGCGTTTGCAGGTCGATAAATATNGTATTAATCTTGATAC-TTAAAACAATGTTTATATCTTTAAATGTTTTGATCCTGTAGCTTCCGGCTTATTCACCTGCCTCTGTGTCCATACTATTGAACCCGTCTGATCGGGGAAAAGAAATTTTGAGTCTTTTGATTTTCTGTAATATTTTATTTTGCTTATA] [+] EMBL CD202090 [GGTTTATTACTCCTGAGTTGTCAATCATCTAGTTGTGTCATAGCTGTTC CCTGTACATAAAATTCTCTTTCACAATCGTTTCTAGTGGTTAATTAACTGGGATTCATTGGTTTAAGTATCCAAAAAGTAATTAATAGAACTTTTTACTTCCCGTAACTAAGTTTGTGTGCTCAGGTGCTTTGTTAATCCCTGACTTAAGTTAATCCATCTTTGTGTATCTAAGATTTAAGACATCTTGTGTTAATCTATAGGCTAGAAATAAATAAATATGACATTCTTGATG AAGATCCAAGGTCTTGACAATTACATTGTCAGTTTCTTAGTAAAGATAACACTATTTTGTTCCTCCGTCACTATTTTTGGTAATTTGTTGTTATGAACAAAAATATTTCGTTATCACTGTGGTAAACTATGTGTTCGTGATTGTACAGTTTTGAGAATAAATTCTGTGGAAAGAGAATATTTCGTCCGACTAAAATGTCGTGTTCCGTTAGATATGTTACATAATATTAATTAATTTCACCGATACCCTACTCATTTCGATCTATGAAGAAGCGTTTGCAGGTCGATAAATATNGTATTAATCTTGATAC TTAAAACAATGTTTATATCTTTAAATGTTTTGATCCTGT ] [+] EMBL CD097651 [GGTTTATTACTCCTGAGTTGTCAATCATCTAGTTGTGTCAGAGATATTCGGCT TACATTTTATTCTCTTTCACAATCGTTTCTAGTGGTTAATTAACTGGGATTCATTGGTTTAAGTATCCAAAAAGTAATTAATAGATCTTTTTACTTCCCGTAACTAAGTTTGTGTGCTCAGGTGCTTTGTTAATCCCTGACTTAAGTTAAACCATCTTTGTGTATCTAAGATTTGAGACATCTTGTGTTAATCTATAGGCTAGAAATAAATAAATATGACATTCTTGATG AAGATCCAAGGTCTTGACAATTACATTGTCAGTTTCTTAGTAAAGATAACACTATTTTGTTCCTCCGTCACTATTTTTGGTAATTTGTTGTTATGAACAAAAATATTTCGTTATCACTGTGGTAAACTATGTGTTCGTGATTGTACAGTTTTGAGAATAAATTCTGTGGAAAGAGAATATTTCGTCCGACTAAAATGTCGTGTTCCGTTAGATATGTTACATAATATTAATTAAT ] [+] EMBL CD072089 [GGTTTATTACTCCTGAGTTGTCAATCATCTAGTTGTGTCAGAGATATTCGGCT TACATTTTATTCTCTTTCACAATCGTTTCTAGTGGTTAATTAACTGGGATTCATTGGTTTAAGTATCCAAAAAGTAATTAATAGAACTTTTTACTTCCCGTAACTAAGTTTGTGTGCTCAGGTGCTTTGTTAATCCCTGACTTAAGTTAATCCATCTTTGTGTATCTAAGATTTAAGACATCTTGTGTTAATCTATAGGCTAGAAATAAAATAATATGACATTCTTGATGAAAGATCC AGGTCTTGACAATTACATTGTC ] [+] EMBL CD072107 [GGTTTATTACTCCTGAGTTGTCAATCATCTAGTTGTGTCAGAGATATTCGGCT TACATTTTATTCTCTTTCACAATCGTTTCTAGTGGTTAATTAACTGGGATTCATTGGTTTAAGTATCCAAAAAGTAATTAATAGAACTTTTTACTTCCCGTAACTAAGTTTGTGTACTCAGGTGCTTTGTTAATCCCTGACTT ] [+] EMBL CD067497 [ tgTGCATGTCGATAAATATGTTATTAATCTTGATACTTTAAAACAATGTTTATATCTTTAAATGTTTTGATCCTGTAGCTTCCGGCTTATTCACCTGCCTCTGTGTCCATACTATTGAACCCGTCTGATCGGGGAAAAGAAATTTTGAGTCTTTTGATTTTCTGTAATATTTTATTTTGCTTATA] consensusID : consensus_8337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [GTATTAGTGGATCCGGACTATGTCAAACATAGAAAGGTATTTGTACATCTTTTGGGTGCGTTCTGGTATGGCCGGGACGAAGTCGATTTGCTTGGACTGAACTACCATAAAGATCTTTGCCTAATGACTAAACAAGTGTATCCACCATTTGGCTCCAAGGTATTGAAGTCTCATATACCAATTCTTTTATCTGAAAATGGAAACGCCACTGAGCTGTCATCAAATTTACTACACAAGTTCACTGAACCTCCGGGACGCACTCGATTACAGGAACGTCTAATTCGAAAACTTGGTTCAAATGCTTTTCCTTTCTACTTCCAGCTTCCGGCTTATTCACCTGCCTCTGTGTCCATACTATTGAACCCGTCTGATCGTGGAAAACGTTGTCGAGTTGAATATGAATTAAAGGTGTATGTAGCTGATGATCAGGATGATAAACCACAAAAAAGGA] [+] EMBL CD137464 [GTATTAGTGGATCCGGACTATGTCAAACATAGAAAGGTATTTGTACATCTTTTGGGTGCGTTCTGGTATGGCCGGGACGAAGTCGATTTGCTTGGACTGAACTACCATAAAGATCTTTGCCTAATGACTAAACAAGTGTATCCACCATTTGGCTCCAAGGTATTGAAGTCTCATATACCAATTCTTTTATCTGAAAATGGAAACGCCACTGAGCTGTCATCAAATTTACTACACAAGTTCACTGAACCTCCGGGACGCACTCGATTACAGGAACGTCTAATTCGAAAACTTGGTTCAAATGCTTTTCCTTTCTACTTCCAGCTTCCGGCTTATTCACCTGCCTCTGTGTCCATACTATTGAACCCGTCTGATCGTGGAAAACGTTGTCGAGTTGAATATGAATTAAAGGTGTATGTAGCTGATGATCAGGATGATAAACCACAAAAAAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8337#0 GGTTTATTACTCCTGAGTTGTCAATCATCTAGTTGTGTCAGAGATATTCGGCTTACATTT 60 consensus_8337#1 ------------------------------------------------------------ consensus_8337#0 TATTCTCTTTCACAATCGTTTCTAGTGGTTAATTAACTGGGATTCATTGGTTTAAGTATC 120 consensus_8337#1 ------------------------------------------------------------ consensus_8337#0 CAAAAAGTAATTAATAGAACTTTTTACTTCCCGTAACTAAGTTTGTGTGCTCAGGTGCTT 180 consensus_8337#1 ------------------------------------------------------------ consensus_8337#0 TGTTAATCCCTGACTTAAGTTAATCCATCTTTGTGTATCTAAGATTTAAGACATCTTGTG 240 consensus_8337#1 ------------------------------------------------------------ consensus_8337#0 TTAATCTATAGGCTAGAAATAAATAAATATGACATTCTTGATGAAGATCCAAGGTCTTGA 300 consensus_8337#1 ------------------------------------------------------------ consensus_8337#0 CAATTACATTGTCAGTTTCTTAGTAAAGATAACACTATTTTGTTCCTCCGTCACTATTTT 360 consensus_8337#1 -----GTATTAGTGGATCCGGACTATGTCAAACATAGAAAGGTATTTGT---ACATCTTT 52 *** * * * * ** **** ** * ** *** consensus_8337#0 TGGTAATTTGTTGTTATGAACAAAAATATTTCGTTATCACTGTGGTAAACTATGTGTTCG 420 consensus_8337#1 TGGGTGCGTTCTGGTATGGCCGGGACGAAGTCGATTTGCTTGGACTGAACTAC-----CA 107 *** * ** **** * * * *** * * ** * ***** * consensus_8337#0 TGATTGTACAGTTTTGAGAATAAATTCTGTGGAAAGAGAATATTTCGTCCG---ACTAAA 477 consensus_8337#1 TAAAGATCTTTGCCTAATGACTAAACAAGTGTATCCACCATTTGGCTCCAAGGTATTGAA 167 * * * * * * ** *** * * ** * * * * * ** consensus_8337#0 ATGTCGTGTTCCGTTAGATATGTTACATAATATTAAT-TAATTTCACCGATACCCTACTC 536 consensus_8337#1 GTCTCATATACCAATTCTTTTATCTGAAAATGGAAACGCCACTGAGCTGTCATCAAATTT 227 * ** * * ** * * * * * *** ** * * * * * * * * consensus_8337#0 ATTTCGATCTATGAAGAAGCGTTTGCAGGTCGATAAATATNGTATTAATCTTGATACTTA 596 consensus_8337#1 ACTACACAAGTTCACTGAAC--CTCCGGGACGCACTCGATTACAGGAACGTCTAATTCGA 285 * * * * * * * * * ** ** ** * ** * * * consensus_8337#0 AAACAATGTTTATATCTTTAAATGTTTTGATCCTGTAGCTTCCGGCTTATTCACCTGCCT 656 consensus_8337#1 AAACTTGGTTCAAATGCTTT--TCCTTTCTACTTCCAGCTTCCGGCTTATTCACCTGCCT 343 **** *** * ** ** * *** * * ************************ consensus_8337#0 CTGTGTCCATACTATTGAACCCGTCTGATCGGGGAAAAGAAATTTTGAGTCTTTTGATTT 716 consensus_8337#1 CTGTGTCCATACTATTGAACCCGTCTGATCGTGGAAAACGT-TGTCGAG---TTGAATAT 399 ******************************* ****** * * *** ** ** * consensus_8337#0 TCTGTAATATTTTATTTTGCTTATA--------------------------- 741 consensus_8337#1 GAATTAAAGGTGTATGTAGCTGATGATCAGGATGATAAACCACAAAAAAGGA 451 *** * *** * *** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||