cluster # 8339

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Schistosoma mansoni
cluster # 8339 cluster # 8339 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8339#0 length = 473 sequences # 2

consensus_8339#1 length = 406 sequences # 1
consensus_8339#2 length = 369 sequences # 3

consensusID : consensus_8339#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 473
fasta sequence

                              [CCTCGAAATTCAACGAATACTACTCCGAGTAGTAATTCA-TTTAAGACTCCGCAGCGTACAAATGGTGCACGCGGTTCAGTTAA-CAGAAAACGTCGTTATGATGAAGCCGTAGCACTATCTTCCCCATCTTCCATCTCATCAAACGTGTGTTCTCGACTTAATCAACCATCGACTCCATATCAACAAACAGGAACACATTTAGTTCAATTTTCTCAATCTTGATTTGTCCGATGGCCATCCTGATACCTTCGATCGTCGGTGGAGTGACAACTATAGGAAGGTCTGTAGGTGCTGCTTCGATGTCTGGTGGATTCAATAGAGCTGGTCCATTCAAGAGTTCCTCAAAGTGTTCCATGGAATCCAGCCTGTTGATCTCGAAATTTGGCGATTAATCACTCCTATTCAAGCGTTCCGCCCATCTGTTCCTCTGCTCTTGAACCTCAGTGATTGGTTCGCCTTGTTTTGTCCCTGAA]

[-] EMBL CD149126             [CCTCGAAATTCAACGAATACTACTCCGAGTAGTAATTCA TTTAAGACTCCGCAGCGTACAAATGGTGCACGCGGTTCAGTTAA CAGAAAACGTCGTTATGATGAAGCCGTAGCACTATCTTCCCCA                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD060836             [                                  ATTCACTTGAATACTCCGCAGCGTACAAATGGTGCACGCGGTTCAGTTAACCAGAAAACGTCGTTATGATGAAACCGTAGCACTATCTTCCCCATCTTCCATCTCATCAAACGTGTGTTCTCGACTTAATCAACCATCGACTCCATATCAACAAACAGGAACACATTTAGTTCAATTTTCTCAATCTTGATTTGTCCGATGGCCATCCTGATACCTTCGATCGTCGGTGGAGTGACAACTATAGGAAGGTCTGTAGGTGCTGCTTCGATGTCTGGTGGATTCAATAGAGCTGGTCCATTCAAGAGTTCCTCAAAGTGTTCCATGGAATCCAGCCTGTTGATCTCGAAATTTGGCGATTAATCACTCCTATTCAAGCGTTCCGCCCATCTGTTCCTCTGCTCTTGAACCTCAGTGATTGGTTCGCCTTGTTTTGTCCCTGAA]




>consensus_8339#0
CCTCGAAATTCAACGAATACTACTCCGAGTAGTAATTCATTTAAGACTCCGCAGCGTACA
AATGGTGCACGCGGTTCAGTTAACAGAAAACGTCGTTATGATGAAGCCGTAGCACTATCT
TCCCCATCTTCCATCTCATCAAACGTGTGTTCTCGACTTAATCAACCATCGACTCCATAT
CAACAAACAGGAACACATTTAGTTCAATTTTCTCAATCTTGATTTGTCCGATGGCCATCC
TGATACCTTCGATCGTCGGTGGAGTGACAACTATAGGAAGGTCTGTAGGTGCTGCTTCGA
TGTCTGGTGGATTCAATAGAGCTGGTCCATTCAAGAGTTCCTCAAAGTGTTCCATGGAAT
CCAGCCTGTTGATCTCGAAATTTGGCGATTAATCACTCCTATTCAAGCGTTCCGCCCATC
TGTTCCTCTGCTCTTGAACCTCAGTGATTGGTTCGCCTTGTTTTGTCCCTGAA

consensusID : consensus_8339#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [CCGCGGGAATTCGATTGAGCTATTGGGTCTCTGCGCGCCAACCAACGCCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAGGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGAAGGTTCTTCCACATTGGACGAACGTATCAATGGTCTTCACATGCTATTTAGTATTTCACGTGAAGACGACAACTGGGATGTATCGGTTCATAAAGCCGTCTTAGCATTTATATGCACATTAGTCTATCGTCCATTTGTAGAGCATGAACATCCAGATCAACCTATTTCAGTAACCGGTTTATTATCGAATTTCACTTCTGCACCGAATTCAAATACGGGAAATCATGCACCCTCATCACCACCGCCTCCTCGAAATTCAACGAATACTACACCGAGTAGTAATTCA]

[+] EMBL CD094951             [CCGCGGGAATTCGATTGAGCTATTGGGTCTCTGCGCGCCAACCAACGCCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAGGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGAAGGTTCTTCCACATTGGACGAACGTATCAATGGTCTTCACATGCTATTTAGTATTTCACGTGAAGACGACAACTGGGATGTATCGGTTCATAAAGCCGTCTTAGCATTTATATGCACATTAGTCTATCGTCCATTTGTAGAGCATGAACATCCAGATCAACCTATTTCAGTAACCGGTTTATTATCGAATTTCACTTCTGCACCGAATTCAAATACGGGAAATCATGCACCCTCATCACCACCGCCTCCTCGAAATTCAACGAATACTACACCGAGTAGTAATTCA]




>consensus_8339#1
CCGCGGGAATTCGATTGAGCTATTGGGTCTCTGCGCGCCAACCAACGCCTCGAATTTCGC
TAGTGAATCTACATCAAGATCTCAGGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGA
AGGTTCTTCCACATTGGACGAACGTATCAATGGTCTTCACATGCTATTTAGTATTTCACG
TGAAGACGACAACTGGGATGTATCGGTTCATAAAGCCGTCTTAGCATTTATATGCACATT
AGTCTATCGTCCATTTGTAGAGCATGAACATCCAGATCAACCTATTTCAGTAACCGGTTT
ATTATCGAATTTCACTTCTGCACCGAATTCAAATACGGGAAATCATGCACCCTCATCACC
ACCGCCTCCTCGAAATTCAACGAATACTACACCGAGTAGTAATTCA

consensusID : consensus_8339#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 369
fasta sequence

                              [CCGTCTTCAGAGTTGGGGTCGACTGACGTAACTGTTCACTTACCTTCTCCACGAGGAAATAATCCTACACATCGTAGGGGATTAATTAATCAATTGCTCCAGATAGTTGAACAAGTGGGTAATGAAGGAATCGGCGGAGGCGGACGAGAAAGCAGTCGAGAAGATAGGCGACGACCTGGGTTAAGGAGATCTGGAAATCAAAGTAATGGAGCAACATCGAATCCAGTTTTATCAACAGAAAATCCACAAAGACCAAACGTCACACCAACCACCGTCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAAGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGAAGGTTCTTCCACATTGGACGAA]

[+] EMBL CD149478             [CCGTCTTCAGAGTTGGGGTCGACTGACGTAACTGTTCACTTACCTTCTCCACGAGGAAATAATCCTACACATCGTAGGGGATTAATTAATCAATTGCTCCAGATAGTTGAACAAGTGGGTAATGAAGGAATCGGCGGAGGCGGACGATAAAGCAGTCGAGAAGATAGGCGACGACCTGGGTTAAGGAGATCTGGAAATCAAAGTAATGGAGCAACATCGAATCCAGTTTTATCAACAGAAAATCCACAAAGACCAAACGTCACACCAACCACCGTCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAAGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGAAGGTTCTTCCACATTGGACGAA]
[+] EMBL CD183087             [                        GACGTAACTGTTCACTTACCTTCTCCACGAGGAAATAATCCTACACATCGTAGGGGATTAATTAATCAATTGCTCCAGATAGTTGAACAAGTGGGTAATGAAGGAATCGGCGGAGGCGGACGAGAAAGCAGTCGAGAAGATAGGCGACGACCTGGGTTAAGGAGATCTGGAAATCAAAGTAATGGAGCAACATCGAATCCAGTATTATCAACAGAAAATCCACAAAGACCAAACGTCACACCAACCACCGTCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAAGAACGAANCAGTGATGGTGAAGAANAT                              ]
[-] EMBL CD153452             [                                                                             GGGATTAATTAATCAATTGCTCCAGATAGTTGAGCAAGTGGGTAATGAAGGAATCGGCGGAGGCGGACGAGAAAGCAGTCGAGAAGATAGGCGGCGACCTGGGTTAAGGAGATCTGGAAATCAAAGTAATGGAGCAACATCGAATC                                                                                                                                                  ]




>consensus_8339#2
CCGTCTTCAGAGTTGGGGTCGACTGACGTAACTGTTCACTTACCTTCTCCACGAGGAAAT
AATCCTACACATCGTAGGGGATTAATTAATCAATTGCTCCAGATAGTTGAACAAGTGGGT
AATGAAGGAATCGGCGGAGGCGGACGAGAAAGCAGTCGAGAAGATAGGCGACGACCTGGG
TTAAGGAGATCTGGAAATCAAAGTAATGGAGCAACATCGAATCCAGTTTTATCAACAGAA
AATCCACAAAGACCAAACGTCACACCAACCACCGTCTCGAATTTCGCTAGTGAATCTACA
TCAAGATCTCAAGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGAAGGTTCTTCCACA
TTGGACGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8339#1      ---CCGCGGGAATTCGATTGA-GCTATT--GGGTCTCTGCGCGCCAACCAACGCCTCGAA 54
consensus_8339#2      CCGTCTTCAGAGTTGGGGTCG-ACTGAC--G--TAACTGTTCACTTACCTTCTCCACGA- 54
consensus_8339#0      ----CCTCGAAATTCAACGAATACTACTCCGAGTAGTAATTCATTTAA-GACTCCGCAG- 54
                          *     * **         **     *  *       *    *    * ** *   

consensus_8339#1      TTTCGCTAGTGAATCTACATCAAGATCTCAGGAACGAACAAGTGA--TGGTGAAGAAAAT 112
consensus_8339#2      ----GGAAATAATCCTACACATCG---TAGGGGATTAATTAATCAATTGCTCCAGATAGT 107
consensus_8339#0      ----CGTACAAATGGTGCACGCGG--TTCAGTTAACAGAAAACGTCGTTATGATGAAGCC 108
                             *   *   * **    *   *  *  *  *   *      *  *   **    

consensus_8339#1      GGAGCAGAAGGTTCTTCCACATTGGACGAACGTATCA-ATGGTCTTCACATGCTATTTAG 171
consensus_8339#2      TGAACAAGTGGGT-------AATGAAGGAATCGGCGG-AGGCGGACGAGAAAGCAGTCGA 159
consensus_8339#0      GTAGCACTATCTTCCCCATCTTCCATCTCATCAAACGTGTGTTCTCGACTTAATCAACCA 168
                        * **      *                *          *      *            

consensus_8339#1      TATTTCACGTGAAGACGACAACTGGGATGTATCGGTTCATAAAGCCGTCTTAGCAT--TT 229
consensus_8339#2      GAAGATAGGCGACGACCTGGGTTAAGGAG-ATCTGGAAATCAAAGTAATGGAGCAACATC 218
consensus_8339#0      TCGACTCCATATCAACAAACAGGAACACATTTAGTTCAATTTTCTCAATCTTGATTTGTC 228
                                    **               *      **            *     * 

consensus_8339#1      ATATGCACATTAGTCTATCGTCCATTTGTAGAGCATGAACATCCAGATCAACCTATTTCA 289
consensus_8339#2      GAATCCAGTTTTATCAACAGAAAATCCACAAAGACCAAACGTC-ACACCAACCACCGTCT 277
consensus_8339#0      CGATGGCCATCCTGATACCTTCGATCGTCGGTGGAGTGACAACTATAGGAAGGTCTGTAG 288
                        **     *      *      **       *     **  * * *  **      *  

consensus_8339#1      GTAACCGGTTTAT---TATCGAATTT--CACTTCTGCACCGAATTCAAATACGGGA-AAT 343
consensus_8339#2      CGAAT---TTCGC---TAGTGAATCTA-CATCAAGATCTCAAGAACGAACAAGTGATGGT 330
consensus_8339#0      GTGCTGCTTCGATGTCTGGTGGATTCAATAGAGCTGGTCCATTCAAGAGTTCCTCAAAGT 348
                              *       *   * **     *         *       *       *   *

consensus_8339#1      CATGCACCCTCATCACCACCGCCTCCTCGAAATTCAACGAATACTACACCGAGTAGTAAT 403
consensus_8339#2      GAAGAAAATGGAGCAGAA--GGTTCTTCCACATTGGACGAA------------------- 369
consensus_8339#0      GTTCCATGGAATCCAGCCTGTTGATCTCGAAATTTGGCGATTAATCACTCCTATTCAAGC 408
                           *       **           ** * ***   ***                    

consensus_8339#1      TCA--------------------------------------------------------- 406
consensus_8339#2      ------------------------------------------------------------
consensus_8339#0      GTTCCGCCCATCTGTTCCTCTGCTCTTGAACCTCAGTGATTGGTTCGCCTTGTTTTGTCC 468
                                                                                  

consensus_8339#1      -----
consensus_8339#2      -----
consensus_8339#0      CTGAA 473