These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence [CCTCGAAATTCAACGAATACTACTCCGAGTAGTAATTCA-TTTAAGACTCCGCAGCGTACAAATGGTGCACGCGGTTCAGTTAA-CAGAAAACGTCGTTATGATGAAGCCGTAGCACTATCTTCCCCATCTTCCATCTCATCAAACGTGTGTTCTCGACTTAATCAACCATCGACTCCATATCAACAAACAGGAACACATTTAGTTCAATTTTCTCAATCTTGATTTGTCCGATGGCCATCCTGATACCTTCGATCGTCGGTGGAGTGACAACTATAGGAAGGTCTGTAGGTGCTGCTTCGATGTCTGGTGGATTCAATAGAGCTGGTCCATTCAAGAGTTCCTCAAAGTGTTCCATGGAATCCAGCCTGTTGATCTCGAAATTTGGCGATTAATCACTCCTATTCAAGCGTTCCGCCCATCTGTTCCTCTGCTCTTGAACCTCAGTGATTGGTTCGCCTTGTTTTGTCCCTGAA] [-] EMBL CD149126 [CCTCGAAATTCAACGAATACTACTCCGAGTAGTAATTCA TTTAAGACTCCGCAGCGTACAAATGGTGCACGCGGTTCAGTTAA CAGAAAACGTCGTTATGATGAAGCCGTAGCACTATCTTCCCCA ] [+] EMBL CD060836 [ ATTCACTTGAATACTCCGCAGCGTACAAATGGTGCACGCGGTTCAGTTAACCAGAAAACGTCGTTATGATGAAACCGTAGCACTATCTTCCCCATCTTCCATCTCATCAAACGTGTGTTCTCGACTTAATCAACCATCGACTCCATATCAACAAACAGGAACACATTTAGTTCAATTTTCTCAATCTTGATTTGTCCGATGGCCATCCTGATACCTTCGATCGTCGGTGGAGTGACAACTATAGGAAGGTCTGTAGGTGCTGCTTCGATGTCTGGTGGATTCAATAGAGCTGGTCCATTCAAGAGTTCCTCAAAGTGTTCCATGGAATCCAGCCTGTTGATCTCGAAATTTGGCGATTAATCACTCCTATTCAAGCGTTCCGCCCATCTGTTCCTCTGCTCTTGAACCTCAGTGATTGGTTCGCCTTGTTTTGTCCCTGAA] consensusID : consensus_8339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [CCGCGGGAATTCGATTGAGCTATTGGGTCTCTGCGCGCCAACCAACGCCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAGGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGAAGGTTCTTCCACATTGGACGAACGTATCAATGGTCTTCACATGCTATTTAGTATTTCACGTGAAGACGACAACTGGGATGTATCGGTTCATAAAGCCGTCTTAGCATTTATATGCACATTAGTCTATCGTCCATTTGTAGAGCATGAACATCCAGATCAACCTATTTCAGTAACCGGTTTATTATCGAATTTCACTTCTGCACCGAATTCAAATACGGGAAATCATGCACCCTCATCACCACCGCCTCCTCGAAATTCAACGAATACTACACCGAGTAGTAATTCA] [+] EMBL CD094951 [CCGCGGGAATTCGATTGAGCTATTGGGTCTCTGCGCGCCAACCAACGCCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAGGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGAAGGTTCTTCCACATTGGACGAACGTATCAATGGTCTTCACATGCTATTTAGTATTTCACGTGAAGACGACAACTGGGATGTATCGGTTCATAAAGCCGTCTTAGCATTTATATGCACATTAGTCTATCGTCCATTTGTAGAGCATGAACATCCAGATCAACCTATTTCAGTAACCGGTTTATTATCGAATTTCACTTCTGCACCGAATTCAAATACGGGAAATCATGCACCCTCATCACCACCGCCTCCTCGAAATTCAACGAATACTACACCGAGTAGTAATTCA] consensusID : consensus_8339#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 369 fasta sequence [CCGTCTTCAGAGTTGGGGTCGACTGACGTAACTGTTCACTTACCTTCTCCACGAGGAAATAATCCTACACATCGTAGGGGATTAATTAATCAATTGCTCCAGATAGTTGAACAAGTGGGTAATGAAGGAATCGGCGGAGGCGGACGAGAAAGCAGTCGAGAAGATAGGCGACGACCTGGGTTAAGGAGATCTGGAAATCAAAGTAATGGAGCAACATCGAATCCAGTTTTATCAACAGAAAATCCACAAAGACCAAACGTCACACCAACCACCGTCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAAGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGAAGGTTCTTCCACATTGGACGAA] [+] EMBL CD149478 [CCGTCTTCAGAGTTGGGGTCGACTGACGTAACTGTTCACTTACCTTCTCCACGAGGAAATAATCCTACACATCGTAGGGGATTAATTAATCAATTGCTCCAGATAGTTGAACAAGTGGGTAATGAAGGAATCGGCGGAGGCGGACGATAAAGCAGTCGAGAAGATAGGCGACGACCTGGGTTAAGGAGATCTGGAAATCAAAGTAATGGAGCAACATCGAATCCAGTTTTATCAACAGAAAATCCACAAAGACCAAACGTCACACCAACCACCGTCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAAGAACGAACAAGTGATGGTGAAGAAAATGGAGCAGAAGGTTCTTCCACATTGGACGAA] [+] EMBL CD183087 [ GACGTAACTGTTCACTTACCTTCTCCACGAGGAAATAATCCTACACATCGTAGGGGATTAATTAATCAATTGCTCCAGATAGTTGAACAAGTGGGTAATGAAGGAATCGGCGGAGGCGGACGAGAAAGCAGTCGAGAAGATAGGCGACGACCTGGGTTAAGGAGATCTGGAAATCAAAGTAATGGAGCAACATCGAATCCAGTATTATCAACAGAAAATCCACAAAGACCAAACGTCACACCAACCACCGTCTCGAATTTCGCTAGTGAATCTACATCAAGATCTCAAGAACGAANCAGTGATGGTGAAGAANAT ] [-] EMBL CD153452 [ GGGATTAATTAATCAATTGCTCCAGATAGTTGAGCAAGTGGGTAATGAAGGAATCGGCGGAGGCGGACGAGAAAGCAGTCGAGAAGATAGGCGGCGACCTGGGTTAAGGAGATCTGGAAATCAAAGTAATGGAGCAACATCGAATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8339#1 ---CCGCGGGAATTCGATTGA-GCTATT--GGGTCTCTGCGCGCCAACCAACGCCTCGAA 54 consensus_8339#2 CCGTCTTCAGAGTTGGGGTCG-ACTGAC--G--TAACTGTTCACTTACCTTCTCCACGA- 54 consensus_8339#0 ----CCTCGAAATTCAACGAATACTACTCCGAGTAGTAATTCATTTAA-GACTCCGCAG- 54 * * ** ** * * * * * ** * consensus_8339#1 TTTCGCTAGTGAATCTACATCAAGATCTCAGGAACGAACAAGTGA--TGGTGAAGAAAAT 112 consensus_8339#2 ----GGAAATAATCCTACACATCG---TAGGGGATTAATTAATCAATTGCTCCAGATAGT 107 consensus_8339#0 ----CGTACAAATGGTGCACGCGG--TTCAGTTAACAGAAAACGTCGTTATGATGAAGCC 108 * * * ** * * * * * * * * ** consensus_8339#1 GGAGCAGAAGGTTCTTCCACATTGGACGAACGTATCA-ATGGTCTTCACATGCTATTTAG 171 consensus_8339#2 TGAACAAGTGGGT-------AATGAAGGAATCGGCGG-AGGCGGACGAGAAAGCAGTCGA 159 consensus_8339#0 GTAGCACTATCTTCCCCATCTTCCATCTCATCAAACGTGTGTTCTCGACTTAATCAACCA 168 * ** * * * * consensus_8339#1 TATTTCACGTGAAGACGACAACTGGGATGTATCGGTTCATAAAGCCGTCTTAGCAT--TT 229 consensus_8339#2 GAAGATAGGCGACGACCTGGGTTAAGGAG-ATCTGGAAATCAAAGTAATGGAGCAACATC 218 consensus_8339#0 TCGACTCCATATCAACAAACAGGAACACATTTAGTTCAATTTTCTCAATCTTGATTTGTC 228 ** * ** * * consensus_8339#1 ATATGCACATTAGTCTATCGTCCATTTGTAGAGCATGAACATCCAGATCAACCTATTTCA 289 consensus_8339#2 GAATCCAGTTTTATCAACAGAAAATCCACAAAGACCAAACGTC-ACACCAACCACCGTCT 277 consensus_8339#0 CGATGGCCATCCTGATACCTTCGATCGTCGGTGGAGTGACAACTATAGGAAGGTCTGTAG 288 ** * * ** * ** * * * ** * consensus_8339#1 GTAACCGGTTTAT---TATCGAATTT--CACTTCTGCACCGAATTCAAATACGGGA-AAT 343 consensus_8339#2 CGAAT---TTCGC---TAGTGAATCTA-CATCAAGATCTCAAGAACGAACAAGTGATGGT 330 consensus_8339#0 GTGCTGCTTCGATGTCTGGTGGATTCAATAGAGCTGGTCCATTCAAGAGTTCCTCAAAGT 348 * * * ** * * * * * consensus_8339#1 CATGCACCCTCATCACCACCGCCTCCTCGAAATTCAACGAATACTACACCGAGTAGTAAT 403 consensus_8339#2 GAAGAAAATGGAGCAGAA--GGTTCTTCCACATTGGACGAA------------------- 369 consensus_8339#0 GTTCCATGGAATCCAGCCTGTTGATCTCGAAATTTGGCGATTAATCACTCCTATTCAAGC 408 * ** ** * *** *** consensus_8339#1 TCA--------------------------------------------------------- 406 consensus_8339#2 ------------------------------------------------------------ consensus_8339#0 GTTCCGCCCATCTGTTCCTCTGCTCTTGAACCTCAGTGATTGGTTCGCCTTGTTTTGTCC 468 consensus_8339#1 ----- consensus_8339#2 ----- consensus_8339#0 CTGAA 473 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||