cluster # 8344

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Schistosoma mansoni
cluster # 8344 cluster # 8344 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8344#0 length = 766 sequences # 4

consensus_8344#1 length = 443 sequences # 1
consensus_8344#2 length = 404 sequences # 1

consensusID : consensus_8344#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 766
fasta sequence

                              [GATTATATTGGTATATTTAAAACCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCCTAGTCTATCATTGGAAAATGCCGTAAGTTGGACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTACTCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACAAACGATACATTACAACTTGTATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTACAGTAACATCAAGTACTTTTGGAGATGATAATTTAAGTTGGGATACTTCTGTTACTTTGTTATTTGGTGATTTGTTAAAATCAAACCGTCTTCGAAGTTTGACATTCAAAGATGTTCCACTTTCTGCTCTACAAATGCATAAAAAACGATTGGAAAATGAGCGTACAATCATTGATTTATCAAAGTCTATTAAACAAGGTCGAATACCAAATATATTTTCACGTAATCACATTAACACATTATT-CACAGATGAAAATTATCGTAATTT]

[+] EMBL CD067640             [GATTATATTGGTATATTTAAAACCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCCTAGTCTATCATTGGAAAATGCCGTAAGTTGGACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTACTCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACAAACGATACATTACAACTTGTATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTACAGTAACATCAAGTA                                                                                                                                                                                                                                                              ]
[+] EMBL CD067644             [GATTATATAGGTATATATAAAACCTATTCCGACGACTCTGACTAAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAACGAGATGGAAGATCGTATTATAATTCAAGCAAATAAACCATTGCCAGATTGTCTAACTGAATTTTATACTCCACCAACAAAGTTAGTTTATAGCAGTAAATCTAGTACACGTGCTAATCTATCATTGGAAAATGCCGTAAGTTGGACAGTACATTGTCGAATTTCTGGAATCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACCAACACTGGAATACAGGCTTTACGAGTGC                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD118563             [                                                                                                                                                                                                             GTCTATCATTGGAAAATGCC        GACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTACTCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACACACGATACATTACAACTTGTATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTACAGTAACATCAAGTACTTTTGGAGATGATAATTTAAGTTGGGATACTTCTGTTACTTTGTTATTTGGTGATTTGTTAAAATCAAACCGTCTTCGAAGTTTGACATTCAAAGATGTTCCACTTTCTGCTCTACAAATGCATAAAAAACGATTGGAAAATGAGCGTACAATCATTGATTTATCAAAGTCTATTAAACAAGGTCGAATACCAAATATATTTTCACGTAATCACATTAACACATTATT CACAGATGAAAATTATCGTAATTT]
[+] EMBL CD118574             [                                                                                                                                                                                                             GTCTATCATTGGAAAATGCC        GACAATACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTACTCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACAAACGATACATTACAACTTGTATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTACAGTAACATCAAGTACTTTTGGAGATGATAATTTAAGTTGGGATACTTCTGTTACTTTGTTATTTGGCGATTTGTTAAAATCAAACCGTCTTCGAAGTTTGACATTCAAAGATGTTCCACTTTCTGCTCTACAAATGCATAAAAAACGATTGGAAAATGAGCGTACAATCATTGATTTATCACAGTCTATTAAACAAGGTCGAATACCAAATATATTTTCACGTCATCAAATTAACACATTATTACA AGATGAAAATTATCGCAATTT]




>consensus_8344#0
GATTATATTGGTATATTTAAAACCTATTCCGACGACTCTGACTCAAACCATTCTTATGAA
ACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCA
AATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTAT
AGCAATAAATCTAGTACACGTCCTAGTCTATCATTGGAAAATGCCGTAAGTTGGACAGTA
CATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTA
AAAGGAATATTAATGAACCACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGC
CCAATTCAGAAAGTGGTACTCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACAA
ACGATACATTACAACTTGTATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATG
ATTCGAAGAAAAGTTCTACAGTAACATCAAGTACTTTTGGAGATGATAATTTAAGTTGGG
ATACTTCTGTTACTTTGTTATTTGGTGATTTGTTAAAATCAAACCGTCTTCGAAGTTTGA
CATTCAAAGATGTTCCACTTTCTGCTCTACAAATGCATAAAAAACGATTGGAAAATGAGC
GTACAATCATTGATTTATCAAAGTCTATTAAACAAGGTCGAATACCAAATATATTTTCAC
GTAATCACATTAACACATTATTCACAGATGAAAATTATCGTAATTT

consensusID : consensus_8344#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [TCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCNTAGTCTATCATTGGAAAATGCCGACAGTACATTGTCGAATTTCTGGAGGTAAGTTTAGCGTATATTATCCCATACCATGAAACGAGTTTTGGATATCATGGTTGTTGTCTTTCGTGAATATTTTTCCCGCAGATACAGTTTTTTTTATGTTGTTGCATCGATGGTGATGTCTCGGGTAATATGCAAACGGTTCACCCTTAAAATATACTTCAAGTAAGAACACAAATAAGATCAATTTCGTTCAGTCATTAAAAAGTTTCCACAGAATATTCAAGAATACAA]

[-] EMBL CD086643             [TCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCNTAGTCTATCATTGGAAAATGCCGACAGTACATTGTCGAATTTCTGGAGGTAAGTTTAGCGTATATTATCCCATACCATGAAACGAGTTTTGGATATCATGGTTGTTGTCTTTCGTGAATATTTTTCCCGCAGATACAGTTTTTTTTATGTTGTTGCATCGATGGTGATGTCTCGGGTAATATGCAAACGGTTCACCCTTAAAATATACTTCAAGTAAGAACACAAATAAGATCAATTTCGTTCAGTCATTAAAAAGTTTCCACAGAATATTCAAGAATACAA]




>consensus_8344#1
TCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGAT
TGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCA
CCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCNTAGTCTATCATTGGAAAAT
GCCGACAGTACATTGTCGAATTTCTGGAGGTAAGTTTAGCGTATATTATCCCATACCATG
AAACGAGTTTTGGATATCATGGTTGTTGTCTTTCGTGAATATTTTTCCCGCAGATACAGT
TTTTTTTATGTTGTTGCATCGATGGTGATGTCTCGGGTAATATGCAAACGGTTCACCCTT
AAAATATACTTCAAGTAAGAACACAAATAAGATCAATTTCGTTCAGTCATTAAAAAGTTT
CCACAGAATATTCAAGAATACAA

consensusID : consensus_8344#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [GTTGATCCTGACGATGTTCTGGTGATATAAATACAGAGATTGATACGGATAGTATAAATAATGATACGATTAGTTTATCGAATGATGCTCAAACTGATGATTATATTGGTATGTTTAAAACCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCCTAGTCTATCATTGGAAAATGCCGACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACTGGGAGGGCTAGGATCAA]

[+] EMBL CD096988             [GTTGATCCTGACGATGTTCTGGTGATATAAATACAGAGATTGATACGGATAGTATAAATAATGATACGATTAGTTTATCGAATGATGCTCAAACTGATGATTATATTGGTATGTTTAAAACCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCCTAGTCTATCATTGGAAAATGCCGACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACTGGGAGGGCTAGGATCAA]




>consensus_8344#2
GTTGATCCTGACGATGTTCTGGTGATATAAATACAGAGATTGATACGGATAGTATAAATA
ATGATACGATTAGTTTATCGAATGATGCTCAAACTGATGATTATATTGGTATGTTTAAAA
CCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAA
TATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTC
TAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTC
CTAGTCTATCATTGGAAAATGCCGACAGTACATTGTCGAATTTCTGGAGTCAATCAACTG
TGATAACGTCTGATTCCAGCGGAAACTGGGAGGGCTAGGATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8344#0      ------------------------------------------------------------
consensus_8344#2      GTTGATCCTGACGATGTTCTGGTGATATAAATACAGAGATTGATACGGATAGTATAAATA 60
consensus_8344#1      ------------------------------------------------------------
                                                                                  

consensus_8344#0      --------------------------------------GATTATATTGGTATATTTAAAA 22
consensus_8344#2      ATGATACGATTAGTTTATCGAATGATGCTCAAACTGATGATTATATTGGTATGTTTAAAA 120
consensus_8344#1      ------------------------------------------------------------
                                                                                  

consensus_8344#0      CCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAA 82
consensus_8344#2      CCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAA 180
consensus_8344#1      --------------------TCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAA 40
                                          ****************************************

consensus_8344#0      TATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTC 142
consensus_8344#2      TATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTC 240
consensus_8344#1      TATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTC 100
                      ************************************************************

consensus_8344#0      TAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTC 202
consensus_8344#2      TAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTC 300
consensus_8344#1      TAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTC 160
                      ************************************************************

consensus_8344#0      CTAGTCTATCATTGGAAAATGCCGTAAGTTGGACAGTACATTGTCGAATTTCTGGAGTCA 262
consensus_8344#2      CTAGTCTATCATTGGAAAATGCCG--------ACAGTACATTGTCGAATTTCTGGAGTCA 352
consensus_8344#1      NTAGTCTATCATTGGAAAATGCCG--------ACAGTACATTGTCGAATTTCTGGAGGTA 212
                       ***********************        *************************  *

consensus_8344#0      A-TCAACTGTGATAACGTCTGATTCCAGCGGA--AACATTAAAAGGAATATTAATGAACC 319
consensus_8344#2      A-TCAACTGTGATAACGTCTGATTCCAGCGGA--AAC--TGGGAGGGCTAGGATCAA--- 404
consensus_8344#1      AGTTTAGCGT-ATATTATCCCATACCATGAAACGAGTTTTGGATATCATGGTTGTTGTCT 271
                      * *  *  ** ***   **  ** ***    *  *    *        *           

consensus_8344#0      ACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTAC 379
consensus_8344#2      ------------------------------------------------------------
consensus_8344#1      TTCGTGAATATTTTTCCCGCAGATACAGTTTTTTTTATGTTGTTGCATCGATGGTGATGT 331
                                                                                  

consensus_8344#0      TCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACAAACGATACATTACAACTTGT 439
consensus_8344#2      ------------------------------------------------------------
consensus_8344#1      CTCGGGTAATATGCAAACGGTTCACCCTTAAAATATACTTCAAGTAAGAACACAAATAAG 391
                                                                                  

consensus_8344#0      ATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTAC 499
consensus_8344#2      ------------------------------------------------------------
consensus_8344#1      ATCAATTTCGTTCAGTCATTAAAAAGTTTCCACAGAATATTCAAGAATACAA-------- 443
                                                                                  

consensus_8344#0      AGTAACATCAAGTACTTTTGGAGATGATAATTTAAGTTGGGATACTTCTGTTACTTTGTT 559
consensus_8344#2      ------------------------------------------------------------
consensus_8344#1      ------------------------------------------------------------
                                                                                  

consensus_8344#0      ATTTGGTGATTTGTTAAAATCAAACCGTCTTCGAAGTTTGACATTCAAAGATGTTCCACT 619
consensus_8344#2      ------------------------------------------------------------
consensus_8344#1      ------------------------------------------------------------
                                                                                  

consensus_8344#0      TTCTGCTCTACAAATGCATAAAAAACGATTGGAAAATGAGCGTACAATCATTGATTTATC 679
consensus_8344#2      ------------------------------------------------------------
consensus_8344#1      ------------------------------------------------------------
                                                                                  

consensus_8344#0      AAAGTCTATTAAACAAGGTCGAATACCAAATATATTTTCACGTAATCACATTAACACATT 739
consensus_8344#2      ------------------------------------------------------------
consensus_8344#1      ------------------------------------------------------------
                                                                                  

consensus_8344#0      ATTCACAGATGAAAATTATCGTAATTT 766
consensus_8344#2      ---------------------------
consensus_8344#1      ---------------------------