cluster # 8347

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Schistosoma mansoni
cluster # 8347 cluster # 8347 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8347#0 length = 1030 sequences # 5

consensus_8347#1 length = 289 sequences # 1

consensusID : consensus_8347#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1030
fasta sequence

                              [TCGAGCCAANAATTCGGCACGAGGGTTTTGTTTTGGGGGGACCGGGTGCTGGGAAAGGTACAGTATGCCAGCAAATTGTGCAGGAATATGGATTTGTACACTTATCTGCTGGTGAATTACTTCGACAAGCTCGTGATTCATCAGATTCTGAATTCGCTAGTGAAATACAAGAACACATGAAAAATGGGACAATCGTACCGGCTAAAATTACTTGTGGTTTATTATATCAAGCAATGAAAAAACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATGATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAAAGTCGAATCGAGTGGACGACAATGAAGAAACATTAAAGCATCGCATAAAACAATTCAAAGAAGAATGTATGCCGATTATTAAATTCTATGAGGCACAAAATTTGGTGACCAGAATTAATGCAAATAAGTCTATACCTGAGGTATATGAACAGGTTCGACAAATGATGAAAACATTGAATATCGTCAGTTGCAAATGAAGAAACAAAAATCTCCTAATTCANATTTCGTATTTGTATTTTACAAATTAACACTAATTGTATTTTTTTTTTATGACAACTGTGTTGCATAATGATCATTATTTTATAGTTGATTTGATGTAAACAAACCCAACGGATATTATTTTTTTTTTATCATTGGCTTTTAAAGTTGTAAAAGGCAAGATTTTTTTCATTGGGAAGAAAAATTTATTTCAGCAGTAGAACTGTACGAAAATGAAGTAGTAATATGGAATTAACCCTATTCATTTCATATTTTTATTTGAATACAAAAAAAGGGTTCAACTATGATTATACCTTGTCAACTATTATTTGTTTTACAGAAAAAGATGTGATTTCCTTGTCTTTATATTTTTTGATAATCAAGTATAACATGTAATAGTAATAATAATAATAAAATATATTGC]

[+] EMBL CD082709             [TCGAGCCAANAATTCGGCACGAGGGTTTTGTTTTGGGGGGACCGGGTGCTGGGAAAGGTACAGTATGCCAGCAAATTGTGCAGGAATATGGATTTGTACACTTATCTGCTGGTGAATTACTTCGACAAGCTCGTGATTCATCAGATTCTGAATTCGCTAGTGAAATACAAGAACACATGAAAAATGGGACAATCGTACCGGCTAAAATTACTTGTGGTTTATTATATCAAGCAATGAAAAAACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATGATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAAAGTCGAATCGAGTGGACGACAATGAAGAAACATTAAAGCATCGCATAAAACAATTCAAAGAAGAATGTATGCCGATTATTAAATTCTATGAGGCACAAAATTTGGTGACCAGAATTAATGCAAATAAGTCTATACCTGAGGTATATGAACAGGTTCGACAAATGATGAAAACATTGAATATCGTCAGTTGCAAATGAAGAAACAAAAATCTCCTAATTCANATTTCGTATTTGTATTTTACAAATTAACAC                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD118157             [                                             GTGCCGGGAAAGGTACAGTATGCCAGCAAATTGTGCAGGAATATGGATCTGTACACTTATCTGCTGGTGAATTACTTCGACAAGCTCGTGATTCATCAGATTCTGAATTCGCTAGTGAAATACAAGAACACATGAAAAATGGGACAATCGTACCGGCTAAAATTACTTGTGGTTTATTATATCAAGCAATGAAAAAACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATGATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD118033             [                                             tTGCTGGGAAAGGTACACCTTGCCTGCAAATTGTGCAGGAATATGGATTCGTACACTTATCTGCTGGTGAATCACTTCGACAAGCTCGTGAGTCATCAGATTCTGAATTCGCTAGTGAAATACGAGAACACATGAAAAATGGGACAATGGTACCGGCTAAAATTACTTGCGGGTTATTATATCAAGCAATGAAAAAACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGCTTTCCACGTAATGATGATAATCGCTTGAGATGGGAAAAAGATTTATGCCCTCATACAATATTAAAGAACGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCACCGTTGCCTTGGACGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD164352             [                                                                                                                                                                                                                                                                 AATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATGATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAAAGTCGAATCGAGTGGACGACAATGAAGAAACATTAAAGCATCGCATAAAAC ATTCAAAGAAGAATGTATGCCGATTATTAAATTCTATGAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD076299             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATCGTCAGTTGCAAATGAAGAACAAAAAATCTCCTAATTCAAATTTTGTATTTGTATTTTACAAATTAACACTAATTGTATTTTTTTTTTATGACAACTGTGTTGCATAATGATCATTATTTTATAGTTGATTTGATGTAAACAAACCCAACGGATATTATTTTTTTTTTATCATTGGCTTTTAAAGTTGTAAAAGGCAAGATTTTTTTCATTGGGAAGAAAAATTTATTTCAGCAGTAGAACTGTACGAAAATGAAGTAGTAATATGGAATTAACCCTATTCATTTCATATTTTTATTTGAATACAAAAAAAGGGTTCAACTATGATTATACCTTGTCAACTATTATTTGTTTTACAGAAAAAGATGTGATTTCCTTGTCTTTATATTTTTTGATAATCAAGTATAACATGTAATAGTAATAATAATAATAAAATATATTGC]




>consensus_8347#0
TCGAGCCAANAATTCGGCACGAGGGTTTTGTTTTGGGGGGACCGGGTGCTGGGAAAGGTA
CAGTATGCCAGCAAATTGTGCAGGAATATGGATTTGTACACTTATCTGCTGGTGAATTAC
TTCGACAAGCTCGTGATTCATCAGATTCTGAATTCGCTAGTGAAATACAAGAACACATGA
AAAATGGGACAATCGTACCGGCTAAAATTACTTGTGGTTTATTATATCAAGCAATGAAAA
AACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATG
ATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTG
TTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAAAGTCGAATCGAG
TGGACGACAATGAAGAAACATTAAAGCATCGCATAAAACAATTCAAAGAAGAATGTATGC
CGATTATTAAATTCTATGAGGCACAAAATTTGGTGACCAGAATTAATGCAAATAAGTCTA
TACCTGAGGTATATGAACAGGTTCGACAAATGATGAAAACATTGAATATCGTCAGTTGCA
AATGAAGAAACAAAAATCTCCTAATTCANATTTCGTATTTGTATTTTACAAATTAACACT
AATTGTATTTTTTTTTTATGACAACTGTGTTGCATAATGATCATTATTTTATAGTTGATT
TGATGTAAACAAACCCAACGGATATTATTTTTTTTTTATCATTGGCTTTTAAAGTTGTAA
AAGGCAAGATTTTTTTCATTGGGAAGAAAAATTTATTTCAGCAGTAGAACTGTACGAAAA
TGAAGTAGTAATATGGAATTAACCCTATTCATTTCATATTTTTATTTGAATACAAAAAAA
GGGTTCAACTATGATTATACCTTGTCAACTATTATTTGTTTTACAGAAAAAGATGTGATT
TCCTTGTCTTTATATTTTTTGATAATCAAGTATAACATGTAATAGTAATAATAATAATAA
AATATATTGC

consensusID : consensus_8347#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [CTTAGTTGGGAAAGTAACAAAAGAGAAGTAGTATGAATATGTATAAACTTATGCAACATGTTAAATCCAAATATCAATGTCCTTAACGATCAGATAATCTTAAAAAAATCATCTGGTCACTCTGAGTTGCAAGATCACTTTTCATTAAACCAAACACCATTATTTGGCGGGATATGAAGTTCAACACTTGTTTTGATTTGGGGGGACCGGGTGCTGGGAAAGGACCAGTATGCCAGCAAAGTGCGCAAGAATATGGATTTGTACACTAATCTGCTGGTGAATTACTTCG]

[+] EMBL CD138005             [CTTAGTTGGGAAAGTAACAAAAGAGAAGTAGTATGAATATGTATAAACTTATGCAACATGTTAAATCCAAATATCAATGTCCTTAACGATCAGATAATCTTAAAAAAATCATCTGGTCACTCTGAGTTGCAAGATCACTTTTCATTAAACCAAACACCATTATTTGGCGGGATATGAAGTTCAACACTTGTTTTGATTTGGGGGGACCGGGTGCTGGGAAAGGACCAGTATGCCAGCAAAGTGCGCAAGAATATGGATTTGTACACTAATCTGCTGGTGAATTACTTCG]




>consensus_8347#1
CTTAGTTGGGAAAGTAACAAAAGAGAAGTAGTATGAATATGTATAAACTTATGCAACATG
TTAAATCCAAATATCAATGTCCTTAACGATCAGATAATCTTAAAAAAATCATCTGGTCAC
TCTGAGTTGCAAGATCACTTTTCATTAAACCAAACACCATTATTTGGCGGGATATGAAGT
TCAACACTTGTTTTGATTTGGGGGGACCGGGTGCTGGGAAAGGACCAGTATGCCAGCAAA
GTGCGCAAGAATATGGATTTGTACACTAATCTGCTGGTGAATTACTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8347#0      TCGAGCCAANAATTCGGCACGAGGGTTTTGTTTTGGGGGGACCGGGTGCTGGGAAAGGTA 60
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      CAGTATGCCAGCAAATTGTGCAGGAATATGGATTTGTACACTTATCTGCTGGTGAATTAC 120
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      TTCGACAAGCTCGTGATTCATCAGATTCTGAATTCGCTAGTGAAATACAAGAACACATGA 180
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      AAAATGGGACAATCGTACCGGCTAAAATTACTTGTGGTTTATTATATCAAGCAATGAAAA 240
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      AACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATG 300
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      ATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTG 360
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      TTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAAAGTCGAATCGAG 420
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      TGGACGACAATGAAGAAACATTAAAGCATCGCATAAAACAATTCAAAGAAGAATGTATGC 480
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      CGATTATTAAATTCTATGAGGCACAAAATTTGGTGACCAGAATTAATGCAAATAAGTCTA 540
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      TACCTGAGGTATATGAACAGGTTCGACAAATGATGAAAACATTGAATATCGTCAGTTGCA 600
consensus_8347#1      --------------------------------------------------CTTAGTTGGG 10
                                                                         * *****  

consensus_8347#0      AATGAAGAAACAAAAATCTCCTAATTCANATTT-CGTATTTGTATTTTACAAATTAACAC 659
consensus_8347#1      AA---AGTAACAAAAGAGAAGTAGTATGAATATGTATAAACTTATGCAACATGTTAAATC 67
                      **   ** *******      ** *    ** *   **    ***   ***  ****  *

consensus_8347#0      TAATTGTATTTTTTTTTTATGACAACTGTGTTGCATAATGATCATTATTTTATAGTTGAT 719
consensus_8347#1      CAAATATCAATGTCCTTAACGATCAGATAATCTTAAAAAAATCATC------TGGTCACT 121
                       ** * *   * *  ** * **  *     *   * **  *****       * **   *

consensus_8347#0      TTGATGTAAACAAACCCAACGGATATTATTTTTTTTTTATCATTGGCTTTTAAAGTTGTA 779
consensus_8347#1      CTGAGTT--GCAAGATCACTTTTCATTAAACCAAA--CACCATTA-TTTGGCGGGATATG 176
                       ***  *   ***   **      ****          * ****   **     * * * 

consensus_8347#0      AAAGGCAAGATTT-TTTTCATTGGGAAGAAAAATTTATTTCAGCAGTAGAACTGTACGA- 837
consensus_8347#1      AAGTTCAACACTTGTTTTGATTTGGGGGGACCGGGTGCTGGGAAAGGACCAGTATGCCAG 236
                      **   *** * ** **** *** **  * *     *  *     ** *  * * * * * 

consensus_8347#0      -AAATGAAGTAGTAATATGGAATTA-ACCCTATTCATTTCATATTTTTATTTGAATACAA 895
consensus_8347#1      CAAAGTGCGCAAGAATATGGATTTGTACACTAATCTGCTGGTGAATTACTTCG------- 289
                       ***    * *  ******** **  ** *** **   *  *   **  ** *       

consensus_8347#0      AAAAAGGGTTCAACTATGATTATACCTTGTCAACTATTATTTGTTTTACAGAAAAAGATG 955
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      TGATTTCCTTGTCTTTATATTTTTTGATAATCAAGTATAACATGTAATAGTAATAATAAT 1015
consensus_8347#1      ------------------------------------------------------------
                                                                                  

consensus_8347#0      AATAAAATATATTGC 1030
consensus_8347#1      ---------------