cluster # 8351

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8351 cluster # 8351 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8351#0 length = 770 sequences # 4

consensus_8351#1 length = 308 sequences # 2

consensusID : consensus_8351#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 770
fasta sequence

                              [CATGGTTCGCACGATCAACACAGGAAATGGGTGCAGTGACCACATGATGAACGTAAATTCAACATACACAGCCAAACGAATAAATCCAATGAGAATATCTACATATAAGAGATATGTAGCTTTCTTATTCCAGGAATGTTCTCGCATAGAGTCAATCGAATGTAAAATATAACGTACAGTAGTCGATAGAAGACTCAATATTAAGATGAAATACTCTATCCCCAAAGCCAAATGTACGGATATTCCGTGTGTAGCGGGCTTCCAGTAGGCTGTTTTGATGAAATATACATCCACAAGGGTTAGAAGAGTAATAAGCATCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGAGTGCTTTTACAACCAAGAAGAGTATGACGACACACTGAAAAAGGAGTATAGAAAGGGATGGCTGATTATTAGTTAAGTATACGACAGTGGGGTAAAACTGTTTTTTGCGGTAATAAGTATTGGTTACGACGATGGATGAAACAATCAAACTTGCTGACGCTAGGAGAGCGTACCTCATTTGAAGGTCGTTACACGTAGCACGACCCT]

[+] EMBL CD060960             [CATGGTTCGCACGATCAACACAGGAAATGGGTGCAGTGACCACATGATGAACGTAAATTCAACATACACAGCCAAACGAATAAATCCAATGAGAATATCTACATATAAGAGATATGTAGCTTTCTTATTCCAGGAATGTTCTCGCATAGAGTCAATCGAATGTAAAATATAACGTACAGTAGTCGATAGAAGACTCAATATTAAGATGAAATACTCTATCCCCAAAGCCAAATGTACGGATATTCCGTGTGTAGCGGGCTTCCAGTAGGCTGTTTTGATGAAATATACATCCACAAGGGTTAGAAGAGTAATAAGCATCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAGAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTGGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGAGTGCTTTCACAACCAAGAAGAGTGTGACGACACACTGAAAAAGGAGTATA                                                                                                                                                             ]
[+] EMBL BG930957             [                                                                                                                                                                                                                                                                  gtcCCAGTAGGCTGTTTTGATGAAATATACATCCACAATGGTTAGAAGAGTAATAAGCATCATTGTTCGAATGTGAAACAGAACACTAGTGACCGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCTAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTTAAACAAGATTATCCACTTC                                                                                                                                                                                                                                                  ]
[-] EMBL CD178897             [                                                                                                                                                                                                                                                                                                                                                     CACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGAGTGCTTTTACAACCAAGAAGAGTATGACGACACACTGAAAAAGGAGTATAGAAAGGGATGGCTGATTATTAGTTAAGTATACGACAGTGGGGTAAAACTGTTTTTTGCGGTAATAAGTATTGGTTACGACGATGGATGAAACAATCAAACTTGCTGACGCTAGGAGAGCGTACCTCATTTGAAGGTCGTTACACGT           ]
[+] EMBL CD154957             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGAGTGCTTTTACAACCAAGAAGAGTATGACGACACACTGAAAAAGGAGTATAGAAAGGGATGGCTGATTATTAGTTAAGTATACGACAGTGGGGTAAAACTGTTTTTTGCGGTAATAAGTATTGGTTACGACGATGGATGAAACAATCAAACTTGCTGACGCTAGGAGAGCGTACCTCATTTGAAGGTCGTTACACGTAGCACGACCCT]




>consensus_8351#0
CATGGTTCGCACGATCAACACAGGAAATGGGTGCAGTGACCACATGATGAACGTAAATTC
AACATACACAGCCAAACGAATAAATCCAATGAGAATATCTACATATAAGAGATATGTAGC
TTTCTTATTCCAGGAATGTTCTCGCATAGAGTCAATCGAATGTAAAATATAACGTACAGT
AGTCGATAGAAGACTCAATATTAAGATGAAATACTCTATCCCCAAAGCCAAATGTACGGA
TATTCCGTGTGTAGCGGGCTTCCAGTAGGCTGTTTTGATGAAATATACATCCACAAGGGT
TAGAAGAGTAATAAGCATCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCT
TTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTAT
AGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCA
CATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAG
CCGACCGAAGAAAGCATATGTGAGTGCTTTTACAACCAAGAAGAGTATGACGACACACTG
AAAAAGGAGTATAGAAAGGGATGGCTGATTATTAGTTAAGTATACGACAGTGGGGTAAAA
CTGTTTTTTGCGGTAATAAGTATTGGTTACGACGATGGATGAAACAATCAAACTTGCTGA
CGCTAGGAGAGCGTACCTCATTTGAAGGTCGTTACACGTAGCACGACCCT

consensusID : consensus_8351#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 308
fasta sequence

                              [GAAGTGGCATCACGGAAAACTGTGTTCATGTATCGAATAGCACGACGTGACATCAACATATCTCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGA]

[-] EMBL CD115119             [GAAGTGGCATCACGGAAAACTGTGTTCATGTATCGAATAGCACGACGTGACATCAACATATCTCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGA]
[-] EMBL CD115132             [                                                                                          AATGCCAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGA]




>consensus_8351#1
GAAGTGGCATCACGGAAAACTGTGTTCATGTATCGAATAGCACGACGTGACATCAACATA
TCTCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCTTTCCATATAATCGAC
CCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAG
AAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGC
ATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGC
ATATGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8351#0      CATGGTTCGCACGATCAACACAGGAAATGGGTGCAGTGACCACATGATGAACGTAAATTC 60
consensus_8351#1      ------------------------------------------------------------
                                                                                  

consensus_8351#0      AACATACACAGCCAAACGAATAAATCCAATGAGAATATCTACATATAAGAGATATGTAGC 120
consensus_8351#1      ------------------------------------------------------------
                                                                                  

consensus_8351#0      TTTCTTATTCCAGGAATGTTCTCGCATAGAGTCAATCGAATGTAAAATATAACGTACAGT 180
consensus_8351#1      ------------------------------------------------------------
                                                                                  

consensus_8351#0      AGTCGATAGAAGACTCAATATTAAGATGAAATACTCTATCCCCAAAGCCAAATGTACGGA 240
consensus_8351#1      ------------------------------------------------------------
                                                                                  

consensus_8351#0      TATTCCGTGTGTAGCGGGCTTCCAGTAGGCTGTTTTGATGAAATATACATCCACAAGGGT 300
consensus_8351#1      ----------GAAGTGGCATCACGGAAAACTGTGTTCATGTATCGAATAGC-ACGA---- 45
                                * ** **  *  * * *  **** ** *** *    * * * ** *    

consensus_8351#0      TAGAAGAGTAATAAGCATCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCT 360
consensus_8351#1      CGTGACATCAACATATCTCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCT 105
                          * *  ** *    *******************************************

consensus_8351#0      TTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTAT 420
consensus_8351#1      TTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTAT 165
                      ************************************************************

consensus_8351#0      AGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCA 480
consensus_8351#1      AGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCA 225
                      ************************************************************

consensus_8351#0      CATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAG 540
consensus_8351#1      CATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAG 285
                      ************************************************************

consensus_8351#0      CCGACCGAAGAAAGCATATGTGAGTGCTTTTACAACCAAGAAGAGTATGACGACACACTG 600
consensus_8351#1      CCGACCGAAGAAAGCATATGTGA------------------------------------- 308
                      ***********************                                     

consensus_8351#0      AAAAAGGAGTATAGAAAGGGATGGCTGATTATTAGTTAAGTATACGACAGTGGGGTAAAA 660
consensus_8351#1      ------------------------------------------------------------
                                                                                  

consensus_8351#0      CTGTTTTTTGCGGTAATAAGTATTGGTTACGACGATGGATGAAACAATCAAACTTGCTGA 720
consensus_8351#1      ------------------------------------------------------------
                                                                                  

consensus_8351#0      CGCTAGGAGAGCGTACCTCATTTGAAGGTCGTTACACGTAGCACGACCCT 770
consensus_8351#1      --------------------------------------------------