These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 770 fasta sequence [CATGGTTCGCACGATCAACACAGGAAATGGGTGCAGTGACCACATGATGAACGTAAATTCAACATACACAGCCAAACGAATAAATCCAATGAGAATATCTACATATAAGAGATATGTAGCTTTCTTATTCCAGGAATGTTCTCGCATAGAGTCAATCGAATGTAAAATATAACGTACAGTAGTCGATAGAAGACTCAATATTAAGATGAAATACTCTATCCCCAAAGCCAAATGTACGGATATTCCGTGTGTAGCGGGCTTCCAGTAGGCTGTTTTGATGAAATATACATCCACAAGGGTTAGAAGAGTAATAAGCATCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGAGTGCTTTTACAACCAAGAAGAGTATGACGACACACTGAAAAAGGAGTATAGAAAGGGATGGCTGATTATTAGTTAAGTATACGACAGTGGGGTAAAACTGTTTTTTGCGGTAATAAGTATTGGTTACGACGATGGATGAAACAATCAAACTTGCTGACGCTAGGAGAGCGTACCTCATTTGAAGGTCGTTACACGTAGCACGACCCT] [+] EMBL CD060960 [CATGGTTCGCACGATCAACACAGGAAATGGGTGCAGTGACCACATGATGAACGTAAATTCAACATACACAGCCAAACGAATAAATCCAATGAGAATATCTACATATAAGAGATATGTAGCTTTCTTATTCCAGGAATGTTCTCGCATAGAGTCAATCGAATGTAAAATATAACGTACAGTAGTCGATAGAAGACTCAATATTAAGATGAAATACTCTATCCCCAAAGCCAAATGTACGGATATTCCGTGTGTAGCGGGCTTCCAGTAGGCTGTTTTGATGAAATATACATCCACAAGGGTTAGAAGAGTAATAAGCATCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAGAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTGGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGAGTGCTTTCACAACCAAGAAGAGTGTGACGACACACTGAAAAAGGAGTATA ] [+] EMBL BG930957 [ gtcCCAGTAGGCTGTTTTGATGAAATATACATCCACAATGGTTAGAAGAGTAATAAGCATCATTGTTCGAATGTGAAACAGAACACTAGTGACCGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCTAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTTAAACAAGATTATCCACTTC ] [-] EMBL CD178897 [ CACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGAGTGCTTTTACAACCAAGAAGAGTATGACGACACACTGAAAAAGGAGTATAGAAAGGGATGGCTGATTATTAGTTAAGTATACGACAGTGGGGTAAAACTGTTTTTTGCGGTAATAAGTATTGGTTACGACGATGGATGAAACAATCAAACTTGCTGACGCTAGGAGAGCGTACCTCATTTGAAGGTCGTTACACGT ] [+] EMBL CD154957 [ AAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGAGTGCTTTTACAACCAAGAAGAGTATGACGACACACTGAAAAAGGAGTATAGAAAGGGATGGCTGATTATTAGTTAAGTATACGACAGTGGGGTAAAACTGTTTTTTGCGGTAATAAGTATTGGTTACGACGATGGATGAAACAATCAAACTTGCTGACGCTAGGAGAGCGTACCTCATTTGAAGGTCGTTACACGTAGCACGACCCT] consensusID : consensus_8351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 308 fasta sequence [GAAGTGGCATCACGGAAAACTGTGTTCATGTATCGAATAGCACGACGTGACATCAACATATCTCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGA] [-] EMBL CD115119 [GAAGTGGCATCACGGAAAACTGTGTTCATGTATCGAATAGCACGACGTGACATCAACATATCTCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGA] [-] EMBL CD115132 [ AATGCCAGGTGATCTTTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTATAGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCACATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAGCCGACCGAAGAAAGCATATGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8351#0 CATGGTTCGCACGATCAACACAGGAAATGGGTGCAGTGACCACATGATGAACGTAAATTC 60 consensus_8351#1 ------------------------------------------------------------ consensus_8351#0 AACATACACAGCCAAACGAATAAATCCAATGAGAATATCTACATATAAGAGATATGTAGC 120 consensus_8351#1 ------------------------------------------------------------ consensus_8351#0 TTTCTTATTCCAGGAATGTTCTCGCATAGAGTCAATCGAATGTAAAATATAACGTACAGT 180 consensus_8351#1 ------------------------------------------------------------ consensus_8351#0 AGTCGATAGAAGACTCAATATTAAGATGAAATACTCTATCCCCAAAGCCAAATGTACGGA 240 consensus_8351#1 ------------------------------------------------------------ consensus_8351#0 TATTCCGTGTGTAGCGGGCTTCCAGTAGGCTGTTTTGATGAAATATACATCCACAAGGGT 300 consensus_8351#1 ----------GAAGTGGCATCACGGAAAACTGTGTTCATGTATCGAATAGC-ACGA---- 45 * ** ** * * * * **** ** *** * * * * ** * consensus_8351#0 TAGAAGAGTAATAAGCATCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCT 360 consensus_8351#1 CGTGACATCAACATATCTCATTGTTCGAAGGTGAAACAGAACACTAATGACAGGTGATCT 105 * * ** * ******************************************* consensus_8351#0 TTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTAT 420 consensus_8351#1 TTCCATATAATCGACCCTTTCTTCAATCAGCCAGTGAAAGGCTCTTACAAATAAAAGTAT 165 ************************************************************ consensus_8351#0 AGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCA 480 consensus_8351#1 AGCGAACAAGAAAAGAAATTCGACTCCCAATTCATTCTGGAAGAATGCAAAAACCAAGCA 225 ************************************************************ consensus_8351#0 CATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAG 540 consensus_8351#1 CATGTCGAAGAAAGCATACCATGACTGTGAAACAAGATTATCCACTTCTGCTCTTTGGAG 285 ************************************************************ consensus_8351#0 CCGACCGAAGAAAGCATATGTGAGTGCTTTTACAACCAAGAAGAGTATGACGACACACTG 600 consensus_8351#1 CCGACCGAAGAAAGCATATGTGA------------------------------------- 308 *********************** consensus_8351#0 AAAAAGGAGTATAGAAAGGGATGGCTGATTATTAGTTAAGTATACGACAGTGGGGTAAAA 660 consensus_8351#1 ------------------------------------------------------------ consensus_8351#0 CTGTTTTTTGCGGTAATAAGTATTGGTTACGACGATGGATGAAACAATCAAACTTGCTGA 720 consensus_8351#1 ------------------------------------------------------------ consensus_8351#0 CGCTAGGAGAGCGTACCTCATTTGAAGGTCGTTACACGTAGCACGACCCT 770 consensus_8351#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||