cluster # 8356

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Schistosoma mansoni
cluster # 8356 cluster # 8356 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8356#0 length = 927 sequences # 5

consensus_8356#1 length = 219 sequences # 1

consensusID : consensus_8356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 927
fasta sequence

                              [TTCATTTATATCTTAATGATCGTTTGGTAACTTTATTAGCGGATGAGAAACCGGCTTTGATTACGTTACTAAACGCGGAATTTGCGAAAAACAAAGATAAAAAAGCTCCTGCTCCAATTCGTTTTTCTGCTGCTCAGAACTTGCTCAAAGATTCAGTGTCTACTGAACCCAGTGGAACTGGAACATTGTCTGGAGATATAGAAACTACTGGTCAAATAGAGGAGATGGACTCTGATGCATTACTTCCAAAAGTAGATATCAGTGACCGATTTACACCTGAACTCCTGGGTCTTCTGAAAAGCAAGATCTGGAAAGAACGTCTAGAAGCACTGACTACTATTGAAAAATTTGTGACCCCTTCCAATTTGATTGATGCTTCGAACGGAAAGCTTCAAGAACCTTTGACCATGATAGCTAAGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTGCTTCTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAACAAGCCCAAATAGTTCTTCCTTCATTAATAC-AGTTTTTGGCTGGGAACCTATTTCAAAGTCTGCCATCGTTTGAAGCCAAGTTCCGTGAGCCGTCGGTAC]

[+] EMBL CD201781             [TTCATTTATATCTTAATGATCGTTTGGTAACTTTATTAGCGGATGAGAAACCGGCTTTGATTACGTTACTAAACGCGGAATTTGCGAAAAACAAAGATAAAAAAGCTCCTGCTCCAATTCGTTTTTCTGCTGCTCAGAACTTGCTCAAAGATTCAGTGTCTACTGAACCCAGTGGAACTGGAACATTGTCTGGAGATATAGAAACTACTGGTCAAATAGAGGAGATGGACTCTGATGCATTACTTCCAAAAGTAGATATCAGTGACCGATTTACACCTGAACTCCTGGGTCTTCTGAAAAGCAAGATCTGGAAAGAACGTCTAGAAGCACTGACTACTATTGAAAAATTTGTGACCCCTTCCAATTTGATTGATGCTTCGAACGGAAAGCTTCAAGAACCTTTGACCATGATAGCTAAGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTGCTTCTTC ATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACC                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD167398             [                                                                                                                                                                                                                                                                                                                                                                                                           GAAC  TTGACCATGATAGCT AGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCC TTGCTTCTTCGATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAACAAGCCCAAATAGTTCTTCCTTCATTAATACAAGTTTTTGGCTGGG                                                       ]
[+] EMBL CD128388             [                                                                                                                                                                                                                                                                                                                                                                                                                TTTGA CATGATAGCT AGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTGCTTCTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTAAAGCTCGTAAACAAGCCCAAATAGTTCTTCCTTCATTAA                                                                         ]
[-] EMBL CD128236             [                                                                                                                                                                                                                                                                                                                                                                                                                             GCTAAGGCAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTGCTTCTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAACAAGCCCAAATAGTTCTTCCTTCATTAATAC AGTTTTTGGCTGG                                                        ]
[-] EMBL CD128374             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATACCTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAAC AGCCC AATAGTTCTTCCTTCATTAATAC AGTTTTTGGCTGGGAACCTATTTCAAAGTCTGCCATCGTTTGAAGCCAAGTTCCGTGAGCCGTCGGTAC]




>consensus_8356#0
TTCATTTATATCTTAATGATCGTTTGGTAACTTTATTAGCGGATGAGAAACCGGCTTTGA
TTACGTTACTAAACGCGGAATTTGCGAAAAACAAAGATAAAAAAGCTCCTGCTCCAATTC
GTTTTTCTGCTGCTCAGAACTTGCTCAAAGATTCAGTGTCTACTGAACCCAGTGGAACTG
GAACATTGTCTGGAGATATAGAAACTACTGGTCAAATAGAGGAGATGGACTCTGATGCAT
TACTTCCAAAAGTAGATATCAGTGACCGATTTACACCTGAACTCCTGGGTCTTCTGAAAA
GCAAGATCTGGAAAGAACGTCTAGAAGCACTGACTACTATTGAAAAATTTGTGACCCCTT
CCAATTTGATTGATGCTTCGAACGGAAAGCTTCAAGAACCTTTGACCATGATAGCTAAGG
CAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTG
CTTCTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTT
TACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCT
CTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTT
TAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCT
CACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATAC
CTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAACAAGCCCAAATAG
TTCTTCCTTCATTAATACAGTTTTTGGCTGGGAACCTATTTCAAAGTCTGCCATCGTTTG
AAGCCAAGTTCCGTGAGCCGTCGGTAC

consensusID : consensus_8356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [CCTCATATTTCGCAGGTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGATGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGGCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGC]

[+] EMBL CD061005             [CCTCATATTTCGCAGGTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGATGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGGCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGC]




>consensus_8356#1
CCTCATATTTCGCAGGTGAACCACCTATTTTACTCTGTCTTGGCGATTCAAAAGTTCAAA
TACGTGATGCAGCTGTAACTGCACTTAGCTCTTGGCAAAGGCGAGTTCCTATTTTATCAG
TATTTGAGAATGACATGTTAGCTGATGCTTTAAAAATGGAAAATCCATTTTTACGAGCCG
AATTACTACGTTGGCTTCAAGAAGTTCTCTCACCTATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8356#0      TTCATTTATATCTTAATGATCGTTTGGTAACTTTATTAGCGGATGAGAAACCGGCTTTGA 60
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      TTACGTTACTAAACGCGGAATTTGCGAAAAACAAAGATAAAAAAGCTCCTGCTCCAATTC 120
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      GTTTTTCTGCTGCTCAGAACTTGCTCAAAGATTCAGTGTCTACTGAACCCAGTGGAACTG 180
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      GAACATTGTCTGGAGATATAGAAACTACTGGTCAAATAGAGGAGATGGACTCTGATGCAT 240
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      TACTTCCAAAAGTAGATATCAGTGACCGATTTACACCTGAACTCCTGGGTCTTCTGAAAA 300
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      GCAAGATCTGGAAAGAACGTCTAGAAGCACTGACTACTATTGAAAAATTTGTGACCCCTT 360
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      CCAATTTGATTGATGCTTCGAACGGAAAGCTTCAAGAACCTTTGACCATGATAGCTAAGG 420
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      CAGCTAATGATGTGAATAAAAACCTGGCTAAACAAGCTTTAATAATCCTGTCTTCCTTTG 480
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      CTTCTTCAATGCCGAAATCGGATGCTGTGAATTACATAAAGTATGTTGAACCACCTATTT 540
consensus_8356#1      -----------------------------CCTCATATTTCGCA-GGTGAACCACCTATTT 30
                                                     * * **   * * * **************

consensus_8356#0      TACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGAGGCAGCTGTAACTGCACTTAGCT 600
consensus_8356#1      TACTCTGTCTTGGCGATTCAAAAGTTCAAATACGTGATGCAGCTGTAACTGCACTTAGCT 90
                      ************************************* **********************

consensus_8356#0      CTTGGCAAAGTCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTT 660
consensus_8356#1      CTTGGCAAAGGCGAGTTCCTATTTTATCAGTATTTGAGAATGACATGTTAGCTGATGCTT 150
                      ********** *************************************************

consensus_8356#0      TAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCT 720
consensus_8356#1      TAAAAATGGAAAATCCATTTTTACGAGCCGAATTACTACGTTGGCTTCAAGAAGTTCTCT 210
                      ************************************************************

consensus_8356#0      CACCTATGCCATTAAACGCCCTGCGGAAAAACGCTTCAGAAATAACAGAGAATCTAATAC 780
consensus_8356#1      CACCTATGC--------------------------------------------------- 219
                      *********                                                   

consensus_8356#0      CTCAAGTGTTTGCTTCTCTTGAAGATCGTAATGTTGAAGCTCGTAAACAAGCCCAAATAG 840
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      TTCTTCCTTCATTAATACAGTTTTTGGCTGGGAACCTATTTCAAAGTCTGCCATCGTTTG 900
consensus_8356#1      ------------------------------------------------------------
                                                                                  

consensus_8356#0      AAGCCAAGTTCCGTGAGCCGTCGGTAC 927
consensus_8356#1      ---------------------------