These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 900 fasta sequence [AAAAGGGAAAAGAAGAAACAACAATGAAGCTCAAGCTGACGCAACAATTTTGGTTCTATGTCTTCATTGTATTAAATTGTTTCCTTGGAGTAACCAGCTTCATTTTATTTGTATTAAGTATTAAAGCACAAGATCATTTATTTCAATATAAATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTTACATGTTATTTGTTTGACCATAGAAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTTTTTATTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGATTTTAGAAAAGCTAAATTATTGATACCATATTCGTGTAGAGTTGGTCAGTTTGTTTATGCAAGAGGTTGCTATGATGAATTAAGTGATTTCGTACAATATTACATAACTCTATTAACATCCATTTGTTTTATTACATCATTTATTTATATTGTATTCATTGGTGTATCAATTCTGAATCTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAATTCAACTTAACTACATTCATTTCATTCATAATAAATGACATTCAGTTGTTACTATGGCAACTAAATAACAAAA--TTTTTTTTTAAAGAATAATTTAGTNTTCACAAACTGAAAAATGTTAATTGTAAAATTGAATTTTATTTTTCGTTTTTTATTCTTTGAGGGACACCAGAGAACGTCAAA] [+] EMBL CD168318 [AAAAGGGAAAAGAAGAAACAACAATGAAGCTCAAGCTGACGCAACAATTTTGGTTCTATGTCTTCATTGTATTAAATTGTTTCCTTGGAGTAACCAGCTTCATTTTATTTGTATTAAGTATTAAAGCACAAGATCATTTATTTCAATATAAATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTTACATGTTATTTGTTTGACCATAGAAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTTTTTATTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGATTTTAGAAAAGCTAAATTATTGA ] [+] EMBL CD168335 [AAAAGGGAAAAGAAGAAACAACAATGAAGCTCAAGCTGACGCAACAATTTTGGTACTATGTCTTCATTGAATTAAATTGTTTCCTTGGAGTAACCAGCTTCATTTTATTTGTATTAAGTATTAAAGCACAAGATCATTTATTTCAATATAAATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTTACATGTTATTTGTTTGACCATACAAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTCTTTATTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGAT ] [+] EMBL CD185170 [ CATGTTATTTGTTTGACCATAGAAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTTTTTATTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGATTTTAGAAAAGCTAAATTATTGATACCATATTCGTGTAGAGTTGGTCAGTTTGTTTATGCAAGAGGTTGCTATGATGAATTAAGTGATTTCGTACAATATTACATAACTCTATTAACATCCATTTGTTTTATTACATCATTTATTTATACTGTATTCATTGGTGTATCAATTCTGAATCTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAATTCAACTTAACTACATTCATTTCATTCATAATAAATGACATTCAGTTGTTACTATGGCAACTAAATAACAAAA TTTTTTTTTAAAGAATAATTTAGTNTTCACAA ] [-] EMBL CD168383 [ ACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGATTTTAGAAAAGCTAAATTATTGATACCATATTCGTGTAGAGTTGGTCAGTTTGTTTATGCAAGAGGTTGCTATGATGAATTAAGTGATTTCGTACAATATTACATAACTCTATTAACATCCATTTGTTTTATTACATCATTTATTTATATTGTATTCATTGGTGTATCAATTCTGAATCTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAATTCAACTTAACTACATT ] [+] EMBL CD185337 [ ATTGTATTCATTGGTGTATCAATTCTGAATCTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAATTCAACTTAACTACATTCATTTCATTCATAATAAATGACATTCAGTTGTTACTATGGCAACTAAATAACAAAATTTTTTTTTTTAAAGAATAATTTAGTTTTCACAAACTGAAAAATGTTAATTGTAAAATTGAATTTTATTTTTCGTTTTTTATTCTTTGAGGGACACCAGAGAACGTCAAA] consensusID : consensus_8358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [CGAGATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTNACATGTTATTGGNGGGNCCATAGCAACAATAATTAACCTATGTATAGCTGTTGTNTCGGNTATCATTGATGACCAATTTTTTATTANTGCTAAAGAAGCCTNGAATACTACTATTAAATATNATTATGAGAAGAATGAATATGGAGATGAATTNGATAAATTACATATGACATNCTTCTGTNGGGGGGGTTAATNCATATGCTGANNCTAGAAAAGCTAAATTATTGATAC] [+] EMBL SM7611 [CGAGATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTNACATGTTATTGGNGGGNCCATAGCAACAATAATTAACCTATGTATAGCTGTTGTNTCGGNTATCATTGATGACCAATTTTTTATTANTGCTAAAGAAGCCTNGAATACTACTATTAAATATNATTATGAGAAGAATGAATATGGAGATGAATTNGATAAATTACATATGACATNCTTCTGTNGGGGGGGTTAATNCATATGCTGANNCTAGAAAAGCTAAATTATTGATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8358#0 AAAAGGGAAAAGAAGAAACAACAATGAAGCTCAAGCTGACGCAACAATTTTGGTTCTATG 60 consensus_8358#1 ------------------------------------------------------------ consensus_8358#0 TCTTCATTGTATTAAATTGTTTCCTTGGAGTAACCAGCTTCATTTTATTTGTATTAAGTA 120 consensus_8358#1 ------------------------------------------------------------ consensus_8358#0 TTAAAGCACAAGATCATTTATTTCAATATAAATTAATTATACAATATACAATACCAGCTA 180 consensus_8358#1 ---------------------------CGAGATTAATTATACAATATACAATACCAGCTA 33 * ***************************** consensus_8358#0 TCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTC 240 consensus_8358#1 TCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTC 93 ************************************************************ consensus_8358#0 TTGGAATATGGAGAAAAATCAATATTTTTTATATTTTACATGTTATTTGTTTGACCATAG 300 consensus_8358#1 TTGGAATATGGAGAAAAATCAATATTTTTTATATTTNACATGTTATTGGNGGGNCCATAG 153 ************************************ ********** * * ****** consensus_8358#0 AAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTTTTTA 360 consensus_8358#1 CAACAATAATTAACCTATGTATAGCTGTTGTNTCGGNTATCATTGATGACCAATTTTTTA 213 ************ ***************** **** ************ ********** consensus_8358#0 TTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATG 420 consensus_8358#1 TTANTGCTAAAGAAGCCTNGAATACTACTATTAAATATNATTATGAGAAGAATGAATATG 273 *** ************** ********** ******** ********************* consensus_8358#0 GAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAG-TTAATTCATATGCT 479 consensus_8358#1 GAGATGAATTNGATAAATTACATATGACATNCTTCTGTNGGGGGGGTTAATNCATATGCT 333 ********** ******************* ******* * ** * ***** ******** consensus_8358#0 GATTTTAGAAAAGCTAAATTATTGATACCATATTCGTGTAGAGTTGGTCAGTTTGTTTAT 539 consensus_8358#1 GANNCTAGAAAAGCTAAATTATTGATAC-------------------------------- 361 ** *********************** consensus_8358#0 GCAAGAGGTTGCTATGATGAATTAAGTGATTTCGTACAATATTACATAACTCTATTAACA 599 consensus_8358#1 ------------------------------------------------------------ consensus_8358#0 TCCATTTGTTTTATTACATCATTTATTTATATTGTATTCATTGGTGTATCAATTCTGAAT 659 consensus_8358#1 ------------------------------------------------------------ consensus_8358#0 CTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAA 719 consensus_8358#1 ------------------------------------------------------------ consensus_8358#0 TTCAACTTAACTACATTCATTTCATTCATAATAAATGACATTCAGTTGTTACTATGGCAA 779 consensus_8358#1 ------------------------------------------------------------ consensus_8358#0 CTAAATAACAAAATTTTTTTTTAAAGAATAATTTAGTNTTCACAAACTGAAAAATGTTAA 839 consensus_8358#1 ------------------------------------------------------------ consensus_8358#0 TTGTAAAATTGAATTTTATTTTTCGTTTTTTATTCTTTGAGGGACACCAGAGAACGTCAA 899 consensus_8358#1 ------------------------------------------------------------ consensus_8358#0 A 900 consensus_8358#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||