cluster # 8358

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Schistosoma mansoni
cluster # 8358 cluster # 8358 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8358#0 length = 900 sequences # 5

consensus_8358#1 length = 361 sequences # 1

consensusID : consensus_8358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 900
fasta sequence

                              [AAAAGGGAAAAGAAGAAACAACAATGAAGCTCAAGCTGACGCAACAATTTTGGTTCTATGTCTTCATTGTATTAAATTGTTTCCTTGGAGTAACCAGCTTCATTTTATTTGTATTAAGTATTAAAGCACAAGATCATTTATTTCAATATAAATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTTACATGTTATTTGTTTGACCATAGAAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTTTTTATTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGATTTTAGAAAAGCTAAATTATTGATACCATATTCGTGTAGAGTTGGTCAGTTTGTTTATGCAAGAGGTTGCTATGATGAATTAAGTGATTTCGTACAATATTACATAACTCTATTAACATCCATTTGTTTTATTACATCATTTATTTATATTGTATTCATTGGTGTATCAATTCTGAATCTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAATTCAACTTAACTACATTCATTTCATTCATAATAAATGACATTCAGTTGTTACTATGGCAACTAAATAACAAAA--TTTTTTTTTAAAGAATAATTTAGTNTTCACAAACTGAAAAATGTTAATTGTAAAATTGAATTTTATTTTTCGTTTTTTATTCTTTGAGGGACACCAGAGAACGTCAAA]

[+] EMBL CD168318             [AAAAGGGAAAAGAAGAAACAACAATGAAGCTCAAGCTGACGCAACAATTTTGGTTCTATGTCTTCATTGTATTAAATTGTTTCCTTGGAGTAACCAGCTTCATTTTATTTGTATTAAGTATTAAAGCACAAGATCATTTATTTCAATATAAATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTTACATGTTATTTGTTTGACCATAGAAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTTTTTATTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGATTTTAGAAAAGCTAAATTATTGA                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD168335             [AAAAGGGAAAAGAAGAAACAACAATGAAGCTCAAGCTGACGCAACAATTTTGGTACTATGTCTTCATTGAATTAAATTGTTTCCTTGGAGTAACCAGCTTCATTTTATTTGTATTAAGTATTAAAGCACAAGATCATTTATTTCAATATAAATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTTACATGTTATTTGTTTGACCATACAAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTCTTTATTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD185170             [                                                                                                                                                                                                                                                                                      CATGTTATTTGTTTGACCATAGAAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTTTTTATTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGATTTTAGAAAAGCTAAATTATTGATACCATATTCGTGTAGAGTTGGTCAGTTTGTTTATGCAAGAGGTTGCTATGATGAATTAAGTGATTTCGTACAATATTACATAACTCTATTAACATCCATTTGTTTTATTACATCATTTATTTATACTGTATTCATTGGTGTATCAATTCTGAATCTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAATTCAACTTAACTACATTCATTTCATTCATAATAAATGACATTCAGTTGTTACTATGGCAACTAAATAACAAAA  TTTTTTTTTAAAGAATAATTTAGTNTTCACAA                                                                            ]
[-] EMBL CD168383             [                                                                                                                                                                                                                                                                                                                                                                                               ACTACTCTTAAATATTATTATGAGAAGAATGAATATGGAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTGATTTTAGAAAAGCTAAATTATTGATACCATATTCGTGTAGAGTTGGTCAGTTTGTTTATGCAAGAGGTTGCTATGATGAATTAAGTGATTTCGTACAATATTACATAACTCTATTAACATCCATTTGTTTTATTACATCATTTATTTATATTGTATTCATTGGTGTATCAATTCTGAATCTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAATTCAACTTAACTACATT                                                                                                                                                                      ]
[+] EMBL CD185337             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATTGTATTCATTGGTGTATCAATTCTGAATCTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAATTCAACTTAACTACATTCATTTCATTCATAATAAATGACATTCAGTTGTTACTATGGCAACTAAATAACAAAATTTTTTTTTTTAAAGAATAATTTAGTTTTCACAAACTGAAAAATGTTAATTGTAAAATTGAATTTTATTTTTCGTTTTTTATTCTTTGAGGGACACCAGAGAACGTCAAA]




>consensus_8358#0
AAAAGGGAAAAGAAGAAACAACAATGAAGCTCAAGCTGACGCAACAATTTTGGTTCTATG
TCTTCATTGTATTAAATTGTTTCCTTGGAGTAACCAGCTTCATTTTATTTGTATTAAGTA
TTAAAGCACAAGATCATTTATTTCAATATAAATTAATTATACAATATACAATACCAGCTA
TCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTC
TTGGAATATGGAGAAAAATCAATATTTTTTATATTTTACATGTTATTTGTTTGACCATAG
AAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTTTTTA
TTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATG
GAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAGTTAATTCATATGCTG
ATTTTAGAAAAGCTAAATTATTGATACCATATTCGTGTAGAGTTGGTCAGTTTGTTTATG
CAAGAGGTTGCTATGATGAATTAAGTGATTTCGTACAATATTACATAACTCTATTAACAT
CCATTTGTTTTATTACATCATTTATTTATATTGTATTCATTGGTGTATCAATTCTGAATC
TTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAAT
TCAACTTAACTACATTCATTTCATTCATAATAAATGACATTCAGTTGTTACTATGGCAAC
TAAATAACAAAATTTTTTTTTAAAGAATAATTTAGTNTTCACAAACTGAAAAATGTTAAT
TGTAAAATTGAATTTTATTTTTCGTTTTTTATTCTTTGAGGGACACCAGAGAACGTCAAA

consensusID : consensus_8358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [CGAGATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTNACATGTTATTGGNGGGNCCATAGCAACAATAATTAACCTATGTATAGCTGTTGTNTCGGNTATCATTGATGACCAATTTTTTATTANTGCTAAAGAAGCCTNGAATACTACTATTAAATATNATTATGAGAAGAATGAATATGGAGATGAATTNGATAAATTACATATGACATNCTTCTGTNGGGGGGGTTAATNCATATGCTGANNCTAGAAAAGCTAAATTATTGATAC]

[+] EMBL SM7611               [CGAGATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTTTTTATATTTNACATGTTATTGGNGGGNCCATAGCAACAATAATTAACCTATGTATAGCTGTTGTNTCGGNTATCATTGATGACCAATTTTTTATTANTGCTAAAGAAGCCTNGAATACTACTATTAAATATNATTATGAGAAGAATGAATATGGAGATGAATTNGATAAATTACATATGACATNCTTCTGTNGGGGGGGTTAATNCATATGCTGANNCTAGAAAAGCTAAATTATTGATAC]




>consensus_8358#1
CGAGATTAATTATACAATATACAATACCAGCTATCTATCCAACTGGAATATTCACCGGAT
GTCTTGGTTTAGTTACTACATGTTTAGGATTTCTTGGAATATGGAGAAAAATCAATATTT
TTTATATTTNACATGTTATTGGNGGGNCCATAGCAACAATAATTAACCTATGTATAGCTG
TTGTNTCGGNTATCATTGATGACCAATTTTTTATTANTGCTAAAGAAGCCTNGAATACTA
CTATTAAATATNATTATGAGAAGAATGAATATGGAGATGAATTNGATAAATTACATATGA
CATNCTTCTGTNGGGGGGGTTAATNCATATGCTGANNCTAGAAAAGCTAAATTATTGATA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8358#0      AAAAGGGAAAAGAAGAAACAACAATGAAGCTCAAGCTGACGCAACAATTTTGGTTCTATG 60
consensus_8358#1      ------------------------------------------------------------
                                                                                  

consensus_8358#0      TCTTCATTGTATTAAATTGTTTCCTTGGAGTAACCAGCTTCATTTTATTTGTATTAAGTA 120
consensus_8358#1      ------------------------------------------------------------
                                                                                  

consensus_8358#0      TTAAAGCACAAGATCATTTATTTCAATATAAATTAATTATACAATATACAATACCAGCTA 180
consensus_8358#1      ---------------------------CGAGATTAATTATACAATATACAATACCAGCTA 33
                                                   * *****************************

consensus_8358#0      TCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTC 240
consensus_8358#1      TCTATCCAACTGGAATATTCACCGGATGTCTTGGTTTAGTTACTACATGTTTAGGATTTC 93
                      ************************************************************

consensus_8358#0      TTGGAATATGGAGAAAAATCAATATTTTTTATATTTTACATGTTATTTGTTTGACCATAG 300
consensus_8358#1      TTGGAATATGGAGAAAAATCAATATTTTTTATATTTNACATGTTATTGGNGGGNCCATAG 153
                      ************************************ ********** *   * ******

consensus_8358#0      AAACAATAATTAATCTATGTATAGCTGTTGTATCGGTTATCATTGATGATCAATTTTTTA 360
consensus_8358#1      CAACAATAATTAACCTATGTATAGCTGTTGTNTCGGNTATCATTGATGACCAATTTTTTA 213
                       ************ ***************** **** ************ **********

consensus_8358#0      TTAATGCTAAAGAAGCCTTGAATACTACTCTTAAATATTATTATGAGAAGAATGAATATG 420
consensus_8358#1      TTANTGCTAAAGAAGCCTNGAATACTACTATTAAATATNATTATGAGAAGAATGAATATG 273
                      *** ************** ********** ******** *********************

consensus_8358#0      GAGATGAATTTGATAAATTACATATGACATTCTTCTGTTGTGGAG-TTAATTCATATGCT 479
consensus_8358#1      GAGATGAATTNGATAAATTACATATGACATNCTTCTGTNGGGGGGGTTAATNCATATGCT 333
                      ********** ******************* ******* * ** * ***** ********

consensus_8358#0      GATTTTAGAAAAGCTAAATTATTGATACCATATTCGTGTAGAGTTGGTCAGTTTGTTTAT 539
consensus_8358#1      GANNCTAGAAAAGCTAAATTATTGATAC-------------------------------- 361
                      **   ***********************                                

consensus_8358#0      GCAAGAGGTTGCTATGATGAATTAAGTGATTTCGTACAATATTACATAACTCTATTAACA 599
consensus_8358#1      ------------------------------------------------------------
                                                                                  

consensus_8358#0      TCCATTTGTTTTATTACATCATTTATTTATATTGTATTCATTGGTGTATCAATTCTGAAT 659
consensus_8358#1      ------------------------------------------------------------
                                                                                  

consensus_8358#0      CTTCATAAATCAATAAAGGGAAAGAATCCATCTTCTTCATGATAAAATTCAAAATGAGAA 719
consensus_8358#1      ------------------------------------------------------------
                                                                                  

consensus_8358#0      TTCAACTTAACTACATTCATTTCATTCATAATAAATGACATTCAGTTGTTACTATGGCAA 779
consensus_8358#1      ------------------------------------------------------------
                                                                                  

consensus_8358#0      CTAAATAACAAAATTTTTTTTTAAAGAATAATTTAGTNTTCACAAACTGAAAAATGTTAA 839
consensus_8358#1      ------------------------------------------------------------
                                                                                  

consensus_8358#0      TTGTAAAATTGAATTTTATTTTTCGTTTTTTATTCTTTGAGGGACACCAGAGAACGTCAA 899
consensus_8358#1      ------------------------------------------------------------
                                                                                  

consensus_8358#0      A 900
consensus_8358#1      -